Wall clock time and date at job start Fri Apr 10 2020 22:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48508 * 109.47067 * 270.00043 * 3 2 1 5 5 H 1.48496 * 109.47071 * 29.99620 * 3 2 1 6 6 H 1.48494 * 109.47223 * 150.00005 * 3 2 1 7 7 C 1.38812 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64709 * 359.97438 * 9 7 2 11 11 C 1.54322 * 107.26947 * 178.98620 * 10 9 7 12 12 C 1.55154 * 102.94372 * 337.80938 * 11 10 9 13 13 H 1.09001 * 111.00514 * 153.61650 * 12 11 10 14 14 N 1.46504 * 111.00486 * 277.42663 * 12 11 10 15 15 C 1.34774 * 120.00123 * 204.99910 * 14 12 11 16 16 O 1.21552 * 120.00028 * 0.02562 * 15 14 12 17 17 C 1.47895 * 120.00003 * 180.02562 * 15 14 12 18 18 C 1.40598 * 119.72624 * 359.97438 * 17 15 14 19 19 C 1.35858 * 120.94997 * 180.02562 * 18 17 15 20 20 C 1.40493 * 119.87833 * 0.02562 * 19 18 17 21 21 C 1.40485 * 121.84579 * 180.02562 * 20 19 18 22 22 N 1.31215 * 119.93842 * 179.97438 * 21 20 19 23 23 C 1.32553 * 122.81059 * 0.02562 * 22 21 20 24 24 C 1.36221 * 121.84285 * 359.97438 * 23 22 21 25 25 C 1.40762 * 118.67421 * 0.02562 * 24 23 22 26 26 C 1.38530 * 119.73154 * 180.02562 * 17 15 14 27 27 C 1.47426 * 125.64978 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00237 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.87993 * 59.57040 * 10 9 7 30 30 H 1.08998 * 109.88063 * 298.40676 * 10 9 7 31 31 H 1.08998 * 110.71687 * 219.44540 * 11 10 9 32 32 H 1.09000 * 110.72288 * 96.17406 * 11 10 9 33 33 H 0.96998 * 119.99588 * 24.99916 * 14 12 11 34 34 H 1.07993 * 119.52822 * 0.02695 * 18 17 15 35 35 H 1.07996 * 120.06058 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.03683 * 359.70717 * 21 20 19 37 37 H 1.08000 * 119.08319 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.66576 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.36364 * 0.02562 * 26 17 15 40 40 H 1.09004 * 110.36802 * 85.24279 * 27 9 7 41 41 H 1.08994 * 110.36756 * 322.92288 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5328 0.0005 11 6 -0.4485 -4.0441 -0.0260 12 6 0.8514 -4.6561 -0.6115 13 1 0.9832 -5.6856 -0.2784 14 7 0.8571 -4.5758 -2.0743 15 6 1.5885 -5.4494 -2.7944 16 8 2.2431 -6.3041 -2.2301 17 6 1.5947 -5.3679 -4.2710 18 6 0.8350 -4.3773 -4.9178 19 6 0.8222 -4.2802 -6.2729 20 6 1.5757 -5.1791 -7.0461 21 6 1.5929 -5.1160 -8.4495 22 7 2.3106 -5.9745 -9.1348 23 6 3.0382 -6.9222 -8.5609 24 6 3.0896 -7.0684 -7.2075 25 6 2.3455 -6.1841 -6.4039 26 6 2.3480 -6.2690 -5.0057 27 6 1.9334 -3.7312 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5582 -2.0522 -0.8828 30 1 -0.5537 -2.0844 0.9027 31 1 -1.2990 -4.2515 -0.6754 32 1 -0.6311 -4.4181 0.9815 33 1 0.3345 -3.8939 -2.5246 34 1 0.2534 -3.6835 -4.3290 35 1 0.2338 -3.5134 -6.7547 36 1 1.0126 -4.3644 -8.9640 37 1 3.6062 -7.5974 -9.1837 38 1 3.6892 -7.8472 -6.7600 39 1 2.9295 -7.0295 -4.5059 40 1 2.1670 -4.0419 1.0178 41 1 2.8325 -3.7406 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015955941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:29 Heat of formation + Delta-G solvation = 27.537234 kcal Electronic energy + Delta-G solvation = -24676.544920 eV Core-core repulsion = 21135.046491 eV Total energy + Delta-G solvation = -3541.498429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.95573 -40.91400 -39.03510 -37.90683 -35.51298 -34.07229 -33.74680 -32.31461 -30.94535 -30.63727 -29.03288 -26.67902 -25.75741 -24.79909 -23.37535 -22.44523 -21.90012 -21.39589 -19.56079 -18.85121 -18.61131 -17.77736 -17.29778 -17.03864 -16.62802 -16.14475 -15.92274 -15.68656 -15.53120 -15.17867 -14.97084 -14.64187 -14.60177 -14.08696 -13.87010 -13.85182 -13.57468 -13.40950 -13.05281 -12.89639 -12.79937 -12.31944 -12.12667 -12.10691 -12.02340 -11.81589 -11.60223 -11.26695 -11.13820 -10.72071 -10.52600 -10.30298 -10.03951 -9.12395 -8.86278 -7.85088 -5.19139 -0.83928 -0.35389 0.80572 1.45541 1.46485 1.47142 1.55801 2.07864 2.32162 2.49239 3.05110 3.33757 3.47109 3.51026 3.52856 3.66802 3.74240 3.78925 3.84142 3.99094 4.06316 4.07654 4.27575 4.32155 4.58650 4.65612 4.67647 4.72860 4.74155 4.88220 4.91844 4.96421 5.02542 5.03810 5.20614 5.25211 5.44564 5.50536 5.60785 5.67679 5.70667 5.77143 6.20093 6.48564 6.95499 7.10375 7.12253 7.77103 8.41155 9.24666 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003310 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.027327 B = 8457.099962 C = 9384.122051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.620 5.620 10 C 0.183 3.817 11 C -0.134 4.134 12 C 0.139 3.861 13 H 0.106 0.894 14 N -0.693 5.693 15 C 0.554 3.446 16 O -0.576 6.576 17 C -0.121 4.121 18 C -0.104 4.104 19 C -0.077 4.077 20 C -0.109 4.109 21 C 0.145 3.855 22 N -0.506 5.506 23 C 0.066 3.934 24 C -0.149 4.149 25 C -0.050 4.050 26 C -0.052 4.052 27 C 0.122 3.878 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.010 0.990 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.408 0.592 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.033 0.967 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -12.849 -15.451 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.033 3.967 13 H 0.123 0.877 14 N -0.343 5.343 15 C 0.342 3.658 16 O -0.457 6.457 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.096 4.096 20 C -0.111 4.111 21 C -0.026 4.026 22 N -0.214 5.214 23 C -0.076 4.076 24 C -0.168 4.168 25 C -0.055 4.055 26 C -0.071 4.071 27 C -0.005 4.005 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.245 0.755 34 H 0.159 0.841 35 H 0.191 0.809 36 H 0.212 0.788 37 H 0.196 0.804 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.051 0.949 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.038 -13.305 -15.927 20.753 hybrid contribution 0.335 1.411 1.276 1.932 sum 0.298 -11.894 -14.651 18.874 Atomic orbital electron populations 1.70132 1.05849 1.25252 1.58061 1.25491 0.96604 1.00405 1.02526 0.85170 0.77559 0.79637 0.77493 1.21171 1.21908 1.20148 1.19328 0.90652 0.83862 1.43284 0.91036 1.44702 1.02496 1.00441 1.87082 1.20979 0.83329 0.91377 0.98481 1.23098 0.96325 0.95610 1.02206 1.22023 0.96172 0.99292 0.79168 0.87661 1.45750 1.48029 1.33508 1.06982 1.18592 0.78750 0.80792 0.87629 1.90721 1.44058 1.37853 1.73099 1.20010 1.01361 0.99134 0.92012 1.21167 0.98153 0.96945 0.95955 1.21239 0.97476 0.98113 0.92818 1.19423 0.98675 0.96778 0.96253 1.23751 0.93994 0.95830 0.89020 1.67460 1.07220 1.04468 1.42255 1.22630 0.96305 0.95655 0.93002 1.22236 0.99693 0.99863 0.95052 1.18354 0.97478 0.96319 0.93329 1.21451 0.96058 0.97342 0.92278 1.22063 0.95271 0.85711 0.97425 0.94284 0.95885 0.97191 0.88666 0.88989 0.75467 0.84145 0.80939 0.78753 0.80417 0.82173 0.83914 0.94898 0.95474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.20 10.31 21.65 0.22 -53.97 16 2 C -0.06 -3.14 5.49 84.86 0.47 -2.67 16 3 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.42 10.28 84.03 0.86 -12.56 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.62 -30.85 3.39 -691.99 -2.35 -33.20 16 10 C 0.18 8.33 5.36 86.73 0.47 8.80 16 11 C -0.13 -4.36 6.55 31.78 0.21 -4.15 16 12 C 0.14 4.70 3.43 46.38 0.16 4.86 16 13 H 0.11 3.37 7.54 -2.39 -0.02 3.35 16 14 N -0.69 -21.80 5.14 -438.78 -2.25 -24.06 16 15 C 0.55 17.82 7.77 86.80 0.67 18.50 16 16 O -0.58 -21.77 15.94 -3.88 -0.06 -21.83 16 17 C -0.12 -3.22 5.87 -20.07 -0.12 -3.33 16 18 C -0.10 -2.27 9.44 22.29 0.21 -2.05 16 19 C -0.08 -1.35 9.77 22.27 0.22 -1.13 16 20 C -0.11 -2.12 5.75 -21.26 -0.12 -2.24 16 21 C 0.15 2.43 11.04 85.33 0.94 3.37 16 22 N -0.51 -9.80 10.29 -195.51 -2.01 -11.81 16 23 C 0.07 1.11 11.07 84.11 0.93 2.04 16 24 C -0.15 -2.59 9.88 22.42 0.22 -2.37 16 25 C -0.05 -1.07 5.74 -21.29 -0.12 -1.19 16 26 C -0.05 -1.28 9.38 22.79 0.21 -1.07 16 27 C 0.12 5.10 6.93 86.85 0.60 5.70 16 28 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.02 1.14 7.38 -2.38 -0.02 1.12 16 30 H 0.01 0.51 7.51 -2.39 -0.02 0.50 16 31 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.41 11.97 6.65 -92.71 -0.62 11.36 16 34 H 0.14 2.82 6.34 -2.91 -0.02 2.80 16 35 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.14 3.46 7.62 -2.91 -0.02 3.44 16 40 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.08 343.66 1.83 -69.25 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.44 Total: 18.06 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.81 Total: 10.50 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.39 Total: -123.04 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.08 1.83 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015955941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.783 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds