Wall clock time and date at job start Fri Apr 10 2020 22:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99755 * 2 1 4 4 H 1.48504 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47086 * 299.99964 * 3 2 1 6 6 H 1.48500 * 109.47486 * 59.99557 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99787 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65061 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27216 * 178.89767 * 10 9 7 12 12 C 1.55161 * 102.94540 * 337.80750 * 11 10 9 13 13 H 1.08993 * 111.00550 * 153.61447 * 12 11 10 14 14 N 1.46505 * 111.00281 * 277.43337 * 12 11 10 15 15 C 1.34778 * 119.99781 * 204.99586 * 14 12 11 16 16 O 1.21505 * 119.99689 * 359.97438 * 15 14 12 17 17 C 1.48274 * 119.99944 * 179.97438 * 15 14 12 18 18 C 1.40275 * 119.23975 * 180.02562 * 17 15 14 19 19 C 1.36506 * 119.81620 * 180.02562 * 18 17 15 20 20 C 1.40755 * 118.24425 * 359.95404 * 19 18 17 21 21 C 1.40415 * 121.27836 * 179.97438 * 20 19 18 22 22 C 1.36132 * 119.65172 * 179.97438 * 21 20 19 23 23 C 1.39440 * 120.90992 * 0.03660 * 22 21 20 24 24 C 1.35993 * 121.08553 * 359.97438 * 23 22 21 25 25 C 1.40822 * 119.73738 * 359.97438 * 24 23 22 26 26 N 1.31875 * 119.24181 * 0.02562 * 17 15 14 27 27 C 1.47425 * 125.64886 * 179.97438 * 9 7 2 28 28 H 0.97006 * 119.99961 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.88183 * 59.47889 * 10 9 7 30 30 H 1.08999 * 110.00852 * 298.38578 * 10 9 7 31 31 H 1.09006 * 110.72152 * 219.44532 * 11 10 9 32 32 H 1.08999 * 110.72599 * 96.17209 * 11 10 9 33 33 H 0.96994 * 120.00141 * 24.99044 * 14 12 11 34 34 H 1.08000 * 120.09543 * 359.97438 * 18 17 15 35 35 H 1.08004 * 120.87885 * 180.23348 * 19 18 17 36 36 H 1.08001 * 120.17680 * 0.02578 * 21 20 19 37 37 H 1.07998 * 119.54933 * 180.02562 * 22 21 20 38 38 H 1.08007 * 119.45554 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.13117 * 180.02562 * 24 23 22 40 40 H 1.09002 * 110.36976 * 85.32934 * 27 9 7 41 41 H 1.09003 * 110.36412 * 323.01145 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0284 12 6 0.8524 -4.6558 -0.6126 13 1 0.9836 -5.6854 -0.2800 14 7 0.8601 -4.5744 -2.0754 15 6 1.5925 -5.4474 -2.7950 16 8 2.2467 -6.3017 -2.2305 17 6 1.5999 -5.3654 -4.2755 18 6 2.3674 -6.2825 -5.0087 19 6 2.3832 -6.2174 -6.3721 20 6 1.6164 -5.2180 -7.0002 21 6 1.5866 -5.0928 -8.3984 22 6 0.8330 -4.1144 -8.9710 23 6 0.0893 -3.2323 -8.1880 24 6 0.0939 -3.3230 -6.8311 25 6 0.8599 -4.3223 -6.2004 26 7 0.8848 -4.4320 -4.8725 27 6 1.9335 -3.7311 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5570 -2.0516 -0.8841 30 1 -0.5573 -2.0845 0.9000 31 1 -1.2980 -4.2511 -0.6792 32 1 -0.6323 -4.4187 0.9785 33 1 0.3381 -3.8922 -2.5259 34 1 2.9449 -7.0375 -4.4960 35 1 2.9651 -6.9171 -6.9537 36 1 2.1578 -5.7697 -9.0164 37 1 0.8110 -4.0198 -10.0467 38 1 -0.5007 -2.4649 -8.6671 39 1 -0.4882 -2.6319 -6.2396 40 1 2.1657 -4.0425 1.0190 41 1 2.8335 -3.7401 -0.6143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016073860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:34 Heat of formation + Delta-G solvation = 50.576914 kcal Electronic energy + Delta-G solvation = -24871.581804 eV Core-core repulsion = 21331.082450 eV Total energy + Delta-G solvation = -3540.499354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10181 -39.43581 -37.47044 -36.74492 -34.01372 -33.47769 -31.82800 -30.79093 -30.19287 -29.11468 -27.31061 -25.31690 -24.35075 -23.77205 -22.29466 -21.28706 -20.06047 -19.74816 -18.36457 -17.91952 -17.34441 -16.76616 -15.85267 -15.37627 -15.11481 -14.84316 -14.59924 -14.55675 -14.09853 -13.96946 -13.68806 -13.60751 -13.29292 -13.02986 -12.45677 -11.91527 -11.87833 -11.82344 -11.76207 -11.70907 -10.93938 -10.88251 -10.78619 -10.69824 -10.39740 -10.10164 -10.07812 -9.91593 -9.65018 -9.50017 -8.99766 -8.71311 -8.52363 -8.45211 -6.78585 -5.68777 -3.01098 0.05310 0.51171 1.76649 2.37446 3.25661 3.34896 3.41695 3.47614 3.49761 3.99548 4.02320 4.34229 4.52914 4.56320 4.59926 4.75265 4.92672 4.97280 5.14996 5.26026 5.33728 5.48260 5.51296 5.56505 5.72615 5.79059 5.81058 5.86115 5.87459 6.11442 6.18141 6.22897 6.28594 6.40135 6.52196 6.53844 6.59601 6.70664 7.03392 7.53931 7.58236 7.60277 7.83502 7.94298 8.27978 8.46382 9.25238 9.85179 10.50884 11.43239 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.003934 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.089202 B = 7115.389668 C = 8411.707736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.124 3.876 13 H 0.093 0.907 14 N -0.678 5.678 15 C 0.565 3.435 16 O -0.542 6.542 17 C 0.124 3.876 18 C -0.124 4.124 19 C -0.066 4.066 20 C -0.090 4.090 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.108 4.108 24 C -0.080 4.080 25 C 0.125 3.875 26 N -0.437 5.437 27 C 0.126 3.874 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.030 0.970 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -12.076 -16.974 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.019 3.981 13 H 0.111 0.889 14 N -0.328 5.328 15 C 0.349 3.651 16 O -0.419 6.419 17 C -0.031 4.031 18 C -0.144 4.144 19 C -0.092 4.092 20 C -0.092 4.092 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.099 4.099 25 C 0.001 3.999 26 N -0.148 5.148 27 C -0.002 4.002 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.047 0.953 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.610 -11.797 -16.073 19.947 hybrid contribution 0.710 0.790 -0.739 1.293 sum 0.100 -11.008 -16.812 20.095 Atomic orbital electron populations 1.69965 1.04792 1.24786 1.57505 1.24762 0.95710 0.97529 1.02429 0.86064 0.78757 0.83905 0.77179 1.20590 1.21839 1.21785 1.19097 0.90444 0.82396 1.43232 0.90533 1.44477 1.01502 0.99866 1.87185 1.21175 0.84528 0.87920 1.01318 1.23231 0.95646 1.00086 1.00255 1.22255 0.97738 0.99651 0.78484 0.88949 1.45737 1.46854 1.32912 1.07252 1.17860 0.80169 0.81940 0.85124 1.90749 1.43236 1.36882 1.71065 1.21470 0.94442 0.92282 0.94861 1.21761 0.98847 0.99559 0.94264 1.21436 0.96742 0.96599 0.94446 1.18984 0.98357 0.96892 0.94957 1.20970 0.99538 0.98954 0.92775 1.20992 0.96395 0.94967 1.00339 1.20939 0.99109 0.99226 0.93517 1.20980 0.97617 0.96624 0.94642 1.18878 0.96804 0.95704 0.88511 1.67888 1.17453 1.18999 1.10495 1.21943 0.94710 0.86392 0.97106 0.93899 0.93515 0.93706 0.91503 0.90811 0.74922 0.83154 0.83776 0.85150 0.85457 0.85071 0.84104 0.95252 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.31 55.49 0.57 -26.42 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 10 C 0.18 4.18 5.36 -3.07 -0.02 4.16 16 11 C -0.15 -2.80 6.55 -24.90 -0.16 -2.97 16 12 C 0.12 2.31 3.43 -65.78 -0.23 2.08 16 13 H 0.09 1.62 7.54 -51.93 -0.39 1.23 16 14 N -0.68 -12.35 5.17 -52.53 -0.27 -12.62 16 15 C 0.57 10.06 7.81 -12.13 -0.09 9.97 16 16 O -0.54 -10.51 15.92 5.36 0.09 -10.42 16 17 C 0.12 1.94 6.75 -82.96 -0.56 1.38 16 18 C -0.12 -1.58 9.54 -39.44 -0.38 -1.96 16 19 C -0.07 -0.69 9.88 -39.26 -0.39 -1.08 16 20 C -0.09 -1.03 5.75 -106.72 -0.61 -1.64 16 21 C -0.10 -0.90 9.77 -39.52 -0.39 -1.28 16 22 C -0.11 -0.87 9.96 -39.89 -0.40 -1.26 16 23 C -0.11 -0.97 9.94 -39.94 -0.40 -1.37 16 24 C -0.08 -0.94 9.99 -39.41 -0.39 -1.33 16 25 C 0.12 1.71 6.61 -84.86 -0.56 1.15 16 26 N -0.44 -6.91 9.47 -7.54 -0.07 -6.98 16 27 C 0.13 2.74 6.93 -2.53 -0.02 2.72 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 30 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.41 7.68 7.97 -40.82 -0.33 7.36 16 34 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16 35 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -32.90 346.16 -10.15 -43.05 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.24 Total: 5.08 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -4.84 Total: 1.76 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.35 Total: -62.09 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.90 -10.15 -43.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016073860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.627 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds