Wall clock time and date at job start Fri Apr 10 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99755 * 2 1 4 4 H 1.48504 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47086 * 299.99964 * 3 2 1 6 6 H 1.48500 * 109.47486 * 59.99557 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99787 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65061 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27216 * 178.89767 * 10 9 7 12 12 C 1.55161 * 102.94540 * 337.80750 * 11 10 9 13 13 H 1.08993 * 111.00550 * 153.61447 * 12 11 10 14 14 N 1.46505 * 111.00281 * 277.43337 * 12 11 10 15 15 C 1.34778 * 119.99781 * 204.99586 * 14 12 11 16 16 O 1.21505 * 119.99689 * 359.97438 * 15 14 12 17 17 C 1.48274 * 119.99944 * 179.97438 * 15 14 12 18 18 C 1.40275 * 119.23975 * 180.02562 * 17 15 14 19 19 C 1.36506 * 119.81620 * 180.02562 * 18 17 15 20 20 C 1.40755 * 118.24425 * 359.95404 * 19 18 17 21 21 C 1.40415 * 121.27836 * 179.97438 * 20 19 18 22 22 C 1.36132 * 119.65172 * 179.97438 * 21 20 19 23 23 C 1.39440 * 120.90992 * 0.03660 * 22 21 20 24 24 C 1.35993 * 121.08553 * 359.97438 * 23 22 21 25 25 C 1.40822 * 119.73738 * 359.97438 * 24 23 22 26 26 N 1.31875 * 119.24181 * 0.02562 * 17 15 14 27 27 C 1.47425 * 125.64886 * 179.97438 * 9 7 2 28 28 H 0.97006 * 119.99961 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.88183 * 59.47889 * 10 9 7 30 30 H 1.08999 * 110.00852 * 298.38578 * 10 9 7 31 31 H 1.09006 * 110.72152 * 219.44532 * 11 10 9 32 32 H 1.08999 * 110.72599 * 96.17209 * 11 10 9 33 33 H 0.96994 * 120.00141 * 24.99044 * 14 12 11 34 34 H 1.08000 * 120.09543 * 359.97438 * 18 17 15 35 35 H 1.08004 * 120.87885 * 180.23348 * 19 18 17 36 36 H 1.08001 * 120.17680 * 0.02578 * 21 20 19 37 37 H 1.07998 * 119.54933 * 180.02562 * 22 21 20 38 38 H 1.08007 * 119.45554 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.13117 * 180.02562 * 24 23 22 40 40 H 1.09002 * 110.36976 * 85.32934 * 27 9 7 41 41 H 1.09003 * 110.36412 * 323.01145 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0284 12 6 0.8524 -4.6558 -0.6126 13 1 0.9836 -5.6854 -0.2800 14 7 0.8601 -4.5744 -2.0754 15 6 1.5925 -5.4474 -2.7950 16 8 2.2467 -6.3017 -2.2305 17 6 1.5999 -5.3654 -4.2755 18 6 2.3674 -6.2825 -5.0087 19 6 2.3832 -6.2174 -6.3721 20 6 1.6164 -5.2180 -7.0002 21 6 1.5866 -5.0928 -8.3984 22 6 0.8330 -4.1144 -8.9710 23 6 0.0893 -3.2323 -8.1880 24 6 0.0939 -3.3230 -6.8311 25 6 0.8599 -4.3223 -6.2004 26 7 0.8848 -4.4320 -4.8725 27 6 1.9335 -3.7311 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5570 -2.0516 -0.8841 30 1 -0.5573 -2.0845 0.9000 31 1 -1.2980 -4.2511 -0.6792 32 1 -0.6323 -4.4187 0.9785 33 1 0.3381 -3.8922 -2.5259 34 1 2.9449 -7.0375 -4.4960 35 1 2.9651 -6.9171 -6.9537 36 1 2.1578 -5.7697 -9.0164 37 1 0.8110 -4.0198 -10.0467 38 1 -0.5007 -2.4649 -8.6671 39 1 -0.4882 -2.6319 -6.2396 40 1 2.1657 -4.0425 1.0190 41 1 2.8335 -3.7401 -0.6143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016073860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:33 Heat of formation + Delta-G solvation = 29.305408 kcal Electronic energy + Delta-G solvation = -24872.504205 eV Core-core repulsion = 21331.082450 eV Total energy + Delta-G solvation = -3541.421756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05932 -40.77729 -38.98899 -37.80065 -35.53051 -34.61747 -33.61203 -31.80275 -31.13495 -30.82634 -29.03323 -26.74093 -25.98338 -24.68226 -23.08993 -22.61452 -21.94541 -21.29708 -19.48963 -18.97573 -18.75551 -18.15584 -17.34469 -16.67522 -16.40939 -16.36408 -15.75919 -15.68981 -15.43956 -15.19841 -15.10262 -14.90671 -14.23800 -14.05339 -14.04320 -13.85714 -13.59072 -12.92575 -12.84658 -12.70954 -12.62718 -12.45765 -12.33624 -12.14119 -12.01392 -11.84988 -11.64804 -11.62906 -11.39555 -10.74563 -10.59774 -10.18050 -9.82009 -9.28519 -8.87925 -7.86411 -5.20847 -0.84808 -0.34752 0.91871 1.37245 1.43431 1.44014 1.54401 2.02195 2.22116 2.47539 2.95296 3.08274 3.32507 3.55902 3.64898 3.65220 3.78215 3.83425 3.90932 4.04551 4.15451 4.24075 4.28600 4.37641 4.50424 4.64843 4.71313 4.77503 4.85082 4.89055 4.96147 5.00003 5.03651 5.08283 5.36917 5.42262 5.43911 5.48828 5.49384 5.64674 5.74744 5.86323 6.18232 6.36541 6.68926 7.06021 7.10025 7.75392 8.39769 9.23882 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.003934 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.089202 B = 7115.389668 C = 8411.707736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.185 3.815 11 C -0.134 4.134 12 C 0.136 3.864 13 H 0.112 0.888 14 N -0.684 5.684 15 C 0.565 3.435 16 O -0.563 6.563 17 C 0.096 3.904 18 C -0.140 4.140 19 C -0.046 4.046 20 C -0.102 4.102 21 C -0.098 4.098 22 C -0.104 4.104 23 C -0.092 4.092 24 C -0.116 4.116 25 C 0.096 3.904 26 N -0.468 5.468 27 C 0.123 3.877 28 H 0.247 0.753 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.157 0.843 35 H 0.190 0.810 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.128 0.872 40 H 0.040 0.960 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 -13.266 -20.051 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.060 3.940 11 C -0.172 4.172 12 C 0.030 3.970 13 H 0.130 0.870 14 N -0.332 5.332 15 C 0.350 3.650 16 O -0.441 6.441 17 C -0.057 4.057 18 C -0.161 4.161 19 C -0.071 4.071 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.028 4.028 26 N -0.180 5.180 27 C -0.003 4.003 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.246 0.754 34 H 0.174 0.826 35 H 0.207 0.793 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.058 0.942 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.084 -13.017 -19.147 23.153 hybrid contribution 0.492 1.190 0.031 1.288 sum 0.576 -11.827 -19.116 22.486 Atomic orbital electron populations 1.70168 1.05999 1.25150 1.58166 1.25551 0.96634 1.00613 1.02510 0.85063 0.77987 0.79724 0.76869 1.19594 1.21812 1.21535 1.19396 0.90705 0.83889 1.43165 0.90879 1.44710 1.02449 1.00604 1.87045 1.20935 0.83454 0.91414 0.98219 1.23092 0.96226 0.95644 1.02248 1.22141 0.96332 0.99674 0.78836 0.87029 1.45775 1.47234 1.33147 1.07067 1.18264 0.79193 0.81145 0.86352 1.90710 1.43946 1.37579 1.71915 1.21273 0.96658 0.94135 0.93624 1.21850 0.99283 0.99535 0.95446 1.21913 0.95438 0.96176 0.93569 1.19330 0.98035 0.96589 0.96426 1.21426 0.99269 0.99412 0.91501 1.21484 0.94805 0.93670 1.02200 1.21343 0.98155 0.99354 0.92354 1.21068 0.99059 0.97234 0.96085 1.19286 0.98182 0.97191 0.88114 1.67759 1.18389 1.19690 1.12172 1.22074 0.95075 0.85554 0.97616 0.94340 0.96695 0.96890 0.89313 0.88397 0.75382 0.82579 0.79302 0.81323 0.81565 0.82477 0.85394 0.94189 0.95565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 10.31 21.65 0.22 -57.09 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.97 47.11 29.55 68.60 2.03 49.13 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 7 C -0.24 -14.17 10.28 84.03 0.86 -13.31 16 8 H 0.07 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.62 -33.02 3.39 -691.99 -2.35 -35.37 16 10 C 0.18 9.13 5.36 86.73 0.47 9.60 16 11 C -0.13 -4.85 6.55 31.78 0.21 -4.64 16 12 C 0.14 5.06 3.43 46.38 0.16 5.22 16 13 H 0.11 3.81 7.54 -2.39 -0.02 3.79 16 14 N -0.68 -25.76 5.17 -438.40 -2.27 -28.03 16 15 C 0.56 20.82 7.81 86.91 0.68 21.50 16 16 O -0.56 -22.23 15.92 -3.73 -0.06 -22.29 16 17 C 0.10 3.12 6.75 42.30 0.29 3.40 16 18 C -0.14 -3.53 9.54 22.36 0.21 -3.32 16 19 C -0.05 -0.83 9.88 22.48 0.22 -0.61 16 20 C -0.10 -2.12 5.75 -21.22 -0.12 -2.24 16 21 C -0.10 -1.27 9.77 22.31 0.22 -1.05 16 22 C -0.10 -1.20 9.96 22.07 0.22 -0.98 16 23 C -0.09 -1.44 9.94 22.04 0.22 -1.22 16 24 C -0.12 -2.74 9.99 22.38 0.22 -2.51 16 25 C 0.10 2.66 6.61 40.47 0.27 2.93 16 26 N -0.47 -15.55 9.47 -177.78 -1.68 -17.23 16 27 C 0.12 5.49 6.93 86.85 0.60 6.09 16 28 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 29 H 0.01 0.82 7.38 -2.39 -0.02 0.80 16 30 H 0.01 0.71 7.51 -2.39 -0.02 0.69 16 31 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 32 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.41 16.11 7.97 -92.71 -0.74 15.37 16 34 H 0.16 3.59 7.60 -2.91 -0.02 3.57 16 35 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 38 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.78 346.16 1.40 -74.38 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.32 Total: 20.65 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.19 Total: 15.84 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -6.08 Total: -137.71 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -75.78 1.40 -74.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016073860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.686 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds