Wall clock time and date at job start Fri Apr 10 2020 22:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47133 * 299.99943 * 3 2 1 6 6 H 1.48494 * 109.47530 * 60.00155 * 3 2 1 7 7 C 1.38817 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64804 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.26947 * 178.96334 * 10 9 7 12 12 C 1.55161 * 102.94308 * 337.80091 * 11 10 9 13 13 H 1.08995 * 111.00756 * 277.39549 * 12 11 10 14 14 N 1.46498 * 111.00437 * 153.57739 * 12 11 10 15 15 C 1.34777 * 119.99828 * 154.72466 * 14 12 11 16 16 O 1.21503 * 119.99892 * 0.28098 * 15 14 12 17 17 C 1.48276 * 120.00096 * 180.27574 * 15 14 12 18 18 C 1.40272 * 119.23913 * 179.72965 * 17 15 14 19 19 C 1.36507 * 119.81669 * 179.73978 * 18 17 15 20 20 C 1.40755 * 118.23975 * 0.50226 * 19 18 17 21 21 C 1.40414 * 121.27437 * 179.78514 * 20 19 18 22 22 C 1.36136 * 119.65649 * 179.97438 * 21 20 19 23 23 C 1.39433 * 120.90678 * 0.02684 * 22 21 20 24 24 C 1.36002 * 121.09204 * 359.97438 * 23 22 21 25 25 C 1.40823 * 119.73316 * 359.97438 * 24 23 22 26 26 N 1.31882 * 119.23502 * 0.02562 * 17 15 14 27 27 C 1.47419 * 125.64825 * 180.02562 * 9 7 2 28 28 H 0.97008 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88555 * 59.53819 * 10 9 7 30 30 H 1.09003 * 109.88039 * 298.37394 * 10 9 7 31 31 H 1.09005 * 110.71664 * 219.44151 * 11 10 9 32 32 H 1.08999 * 110.88029 * 96.23721 * 11 10 9 33 33 H 0.97001 * 120.00384 * 335.00912 * 14 12 11 34 34 H 1.08005 * 120.09307 * 359.97438 * 18 17 15 35 35 H 1.08000 * 120.88627 * 180.26534 * 19 18 17 36 36 H 1.08001 * 120.17075 * 359.95881 * 21 20 19 37 37 H 1.07994 * 119.54643 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.45873 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.13270 * 180.02562 * 24 23 22 40 40 H 1.09002 * 110.36625 * 85.27534 * 27 9 7 41 41 H 1.08996 * 110.36984 * 322.94892 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4485 -4.0440 -0.0266 12 6 0.8513 -4.6558 -0.6126 13 1 0.8552 -4.5961 -1.7009 14 7 1.0289 -6.0393 -0.1648 15 6 1.7539 -6.9000 -0.9065 16 8 2.2644 -6.5270 -1.9441 17 6 1.9285 -8.3019 -0.4564 18 6 2.6814 -9.1856 -1.2437 19 6 2.8542 -10.4774 -0.8378 20 6 2.2523 -10.8827 0.3683 21 6 2.3850 -12.1974 0.8434 22 6 1.7893 -12.5537 2.0145 23 6 1.0473 -11.6307 2.7505 24 6 0.8970 -10.3488 2.3218 25 6 1.4985 -9.9405 1.1157 26 7 1.3674 -8.6907 0.6720 27 6 1.9334 -3.7311 -0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5584 -2.0517 -0.8824 30 1 -0.5537 -2.0848 0.9030 31 1 -1.2991 -4.2511 -0.6760 32 1 -0.6326 -4.4209 0.9795 33 1 0.6213 -6.3371 0.6635 34 1 3.1264 -8.8438 -2.1665 35 1 3.4341 -11.1712 -1.4283 36 1 2.9564 -12.9221 0.2825 37 1 1.8928 -13.5652 2.3784 38 1 0.5843 -11.9387 3.6762 39 1 0.3192 -9.6465 2.9044 40 1 2.1665 -4.0420 1.0179 41 1 2.8328 -3.7405 -0.6162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016073865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:38 Heat of formation + Delta-G solvation = 50.826260 kcal Electronic energy + Delta-G solvation = -24273.146961 eV Core-core repulsion = 20732.658420 eV Total energy + Delta-G solvation = -3540.488541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25303 -39.52104 -37.50774 -36.85959 -34.25892 -33.68985 -31.91429 -30.95037 -30.35257 -29.10827 -27.23591 -25.41154 -24.36422 -23.83691 -22.45045 -21.22440 -20.31624 -19.93520 -18.46819 -18.03652 -17.49144 -16.82380 -15.93025 -15.49186 -15.24497 -14.97110 -14.72707 -14.56729 -14.26940 -14.05212 -13.95513 -13.55416 -13.43797 -12.80108 -12.38703 -12.25992 -12.04007 -11.96572 -11.85516 -11.77188 -10.99474 -10.93472 -10.89188 -10.74592 -10.45920 -10.19594 -10.04024 -9.86968 -9.71475 -9.61466 -9.13992 -8.73916 -8.63015 -8.56554 -6.81044 -5.68685 -3.02054 -0.10676 0.36440 1.60910 2.23161 3.12763 3.16420 3.43116 3.48711 3.51270 3.82671 3.86046 4.19498 4.41078 4.45586 4.53279 4.62652 4.78229 4.81346 4.99379 5.12690 5.31425 5.40299 5.46929 5.57710 5.61215 5.68186 5.71911 5.78392 5.82748 5.96747 6.03380 6.12501 6.21768 6.36174 6.44114 6.46370 6.60258 6.71335 6.98080 7.36596 7.57304 7.61208 7.74944 7.85168 8.26396 8.32810 9.24640 9.84463 10.49572 11.43335 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.002545 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.270614 B =11001.010005 C =11379.707964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.124 3.876 13 H 0.099 0.901 14 N -0.692 5.692 15 C 0.564 3.436 16 O -0.530 6.530 17 C 0.125 3.875 18 C -0.124 4.124 19 C -0.064 4.064 20 C -0.090 4.090 21 C -0.101 4.101 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.084 4.084 25 C 0.124 3.876 26 N -0.443 5.443 27 C 0.130 3.870 28 H 0.252 0.748 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.021 0.979 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -27.676 3.241 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.019 3.981 13 H 0.117 0.883 14 N -0.342 5.342 15 C 0.347 3.653 16 O -0.405 6.405 17 C -0.029 4.029 18 C -0.144 4.144 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.102 4.102 25 C 0.000 4.000 26 N -0.155 5.155 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.039 0.961 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.274 -26.575 3.047 26.779 hybrid contribution 0.708 0.098 -0.010 0.714 sum 1.981 -26.477 3.037 26.724 Atomic orbital electron populations 1.69959 1.04872 1.24930 1.57368 1.24808 0.95761 0.97683 1.02317 0.86017 0.78743 0.83664 0.77195 1.20491 1.21740 1.21782 1.19124 0.90533 0.82237 1.43418 0.90313 1.44403 1.01662 0.99775 1.87237 1.21151 0.84491 0.87404 1.01511 1.23192 0.95766 0.99943 0.99903 1.22428 0.97202 0.78302 1.00181 0.88276 1.45886 1.51373 1.11097 1.25812 1.17899 0.79509 0.83817 0.84045 1.90801 1.48422 1.77544 1.23764 1.21498 0.95038 0.95165 0.91196 1.21795 0.98063 0.93268 1.01307 1.21470 0.96964 0.96040 0.94495 1.18993 0.98904 0.95308 0.96001 1.21001 0.99774 0.94464 0.96738 1.21001 0.96940 0.99973 0.94868 1.20943 0.98451 0.93068 1.00124 1.20921 0.98653 0.96547 0.94100 1.18870 0.96910 0.88687 0.95515 1.67851 1.18284 1.16631 1.12730 1.21826 0.94748 0.86125 0.97094 0.93796 0.93167 0.93527 0.91536 0.91897 0.75606 0.83003 0.83656 0.85055 0.85383 0.85067 0.84272 0.96137 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.45 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.92 3.39 -170.06 -0.58 -16.50 16 10 C 0.18 4.39 5.37 -3.06 -0.02 4.37 16 11 C -0.15 -2.78 6.60 -24.90 -0.16 -2.94 16 12 C 0.12 2.34 3.43 -65.77 -0.23 2.12 16 13 H 0.10 2.02 7.53 -51.93 -0.39 1.63 16 14 N -0.69 -11.09 5.18 -52.52 -0.27 -11.36 16 15 C 0.56 9.22 7.81 -12.13 -0.09 9.12 16 16 O -0.53 -10.14 15.92 5.36 0.09 -10.05 16 17 C 0.12 1.71 6.75 -82.95 -0.56 1.16 16 18 C -0.12 -1.40 9.54 -39.44 -0.38 -1.78 16 19 C -0.06 -0.57 9.88 -39.26 -0.39 -0.96 16 20 C -0.09 -0.87 5.75 -106.71 -0.61 -1.48 16 21 C -0.10 -0.71 9.77 -39.52 -0.39 -1.09 16 22 C -0.11 -0.67 9.96 -39.89 -0.40 -1.07 16 23 C -0.11 -0.71 9.94 -39.94 -0.40 -1.11 16 24 C -0.08 -0.75 9.99 -39.41 -0.39 -1.15 16 25 C 0.12 1.40 6.61 -84.85 -0.56 0.84 16 26 N -0.44 -5.79 9.47 -7.54 -0.07 -5.86 16 27 C 0.13 2.87 6.93 -2.52 -0.02 2.86 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 30 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 33 H 0.41 5.81 7.87 -40.82 -0.32 5.49 16 34 H 0.15 1.62 7.60 -52.48 -0.40 1.22 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -33.57 345.97 -10.14 -43.71 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.23 Total: 2.28 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -4.84 Total: 1.90 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.35 Total: -60.57 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.57 -10.14 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016073865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.537 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds