Wall clock time and date at job start Fri Apr 10 2020 22:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47133 * 299.99943 * 3 2 1 6 6 H 1.48494 * 109.47530 * 60.00155 * 3 2 1 7 7 C 1.38817 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64804 * 359.97438 * 9 7 2 11 11 C 1.54319 * 107.26947 * 178.96334 * 10 9 7 12 12 C 1.55161 * 102.94308 * 337.80091 * 11 10 9 13 13 H 1.08995 * 111.00756 * 277.39549 * 12 11 10 14 14 N 1.46498 * 111.00437 * 153.57739 * 12 11 10 15 15 C 1.34777 * 119.99828 * 154.72466 * 14 12 11 16 16 O 1.21503 * 119.99892 * 0.28098 * 15 14 12 17 17 C 1.48276 * 120.00096 * 180.27574 * 15 14 12 18 18 C 1.40272 * 119.23913 * 179.72965 * 17 15 14 19 19 C 1.36507 * 119.81669 * 179.73978 * 18 17 15 20 20 C 1.40755 * 118.23975 * 0.50226 * 19 18 17 21 21 C 1.40414 * 121.27437 * 179.78514 * 20 19 18 22 22 C 1.36136 * 119.65649 * 179.97438 * 21 20 19 23 23 C 1.39433 * 120.90678 * 0.02684 * 22 21 20 24 24 C 1.36002 * 121.09204 * 359.97438 * 23 22 21 25 25 C 1.40823 * 119.73316 * 359.97438 * 24 23 22 26 26 N 1.31882 * 119.23502 * 0.02562 * 17 15 14 27 27 C 1.47419 * 125.64825 * 180.02562 * 9 7 2 28 28 H 0.97008 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88555 * 59.53819 * 10 9 7 30 30 H 1.09003 * 109.88039 * 298.37394 * 10 9 7 31 31 H 1.09005 * 110.71664 * 219.44151 * 11 10 9 32 32 H 1.08999 * 110.88029 * 96.23721 * 11 10 9 33 33 H 0.97001 * 120.00384 * 335.00912 * 14 12 11 34 34 H 1.08005 * 120.09307 * 359.97438 * 18 17 15 35 35 H 1.08000 * 120.88627 * 180.26534 * 19 18 17 36 36 H 1.08001 * 120.17075 * 359.95881 * 21 20 19 37 37 H 1.07994 * 119.54643 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.45873 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.13270 * 180.02562 * 24 23 22 40 40 H 1.09002 * 110.36625 * 85.27534 * 27 9 7 41 41 H 1.08996 * 110.36984 * 322.94892 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4485 -4.0440 -0.0266 12 6 0.8513 -4.6558 -0.6126 13 1 0.8552 -4.5961 -1.7009 14 7 1.0289 -6.0393 -0.1648 15 6 1.7539 -6.9000 -0.9065 16 8 2.2644 -6.5270 -1.9441 17 6 1.9285 -8.3019 -0.4564 18 6 2.6814 -9.1856 -1.2437 19 6 2.8542 -10.4774 -0.8378 20 6 2.2523 -10.8827 0.3683 21 6 2.3850 -12.1974 0.8434 22 6 1.7893 -12.5537 2.0145 23 6 1.0473 -11.6307 2.7505 24 6 0.8970 -10.3488 2.3218 25 6 1.4985 -9.9405 1.1157 26 7 1.3674 -8.6907 0.6720 27 6 1.9334 -3.7311 -0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5584 -2.0517 -0.8824 30 1 -0.5537 -2.0848 0.9030 31 1 -1.2991 -4.2511 -0.6760 32 1 -0.6326 -4.4209 0.9795 33 1 0.6213 -6.3371 0.6635 34 1 3.1264 -8.8438 -2.1665 35 1 3.4341 -11.1712 -1.4283 36 1 2.9564 -12.9221 0.2825 37 1 1.8928 -13.5652 2.3784 38 1 0.5843 -11.9387 3.6762 39 1 0.3192 -9.6465 2.9044 40 1 2.1665 -4.0420 1.0179 41 1 2.8328 -3.7405 -0.6162 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016073865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:37 Heat of formation + Delta-G solvation = 28.911284 kcal Electronic energy + Delta-G solvation = -24274.097266 eV Core-core repulsion = 20732.658420 eV Total energy + Delta-G solvation = -3541.438846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06506 -40.77101 -39.02002 -37.80851 -35.75871 -34.62048 -33.74361 -31.82463 -31.13283 -30.84215 -28.93926 -26.80761 -25.85778 -24.64854 -23.07489 -22.56108 -22.04219 -21.60684 -19.50013 -18.96755 -18.80465 -18.14406 -17.37782 -16.70731 -16.41427 -16.33949 -15.94008 -15.68978 -15.43385 -15.14866 -15.06528 -14.72287 -14.26546 -14.15235 -14.02881 -13.97117 -13.73977 -12.98036 -12.82132 -12.70466 -12.61852 -12.46648 -12.44055 -12.17828 -12.00511 -11.84764 -11.64008 -11.63417 -11.43009 -10.74567 -10.64203 -10.23222 -9.81724 -9.26549 -8.94822 -7.88010 -5.24642 -0.85782 -0.34359 0.92439 1.36263 1.45065 1.46600 1.57113 1.90612 2.20017 2.48452 2.91018 3.08437 3.30629 3.55726 3.62317 3.64450 3.80343 3.83293 3.92784 4.00589 4.14398 4.17552 4.26069 4.39044 4.51739 4.54815 4.67298 4.78186 4.82470 4.89733 4.93844 5.01625 5.04654 5.10383 5.38385 5.39954 5.43689 5.45070 5.50624 5.60868 5.70916 5.87103 6.15933 6.32245 6.66792 7.04303 7.07557 7.71677 8.35722 9.22511 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.002545 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.270614 B =11001.010005 C =11379.707964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.186 3.814 11 C -0.129 4.129 12 C 0.142 3.858 13 H 0.084 0.916 14 N -0.684 5.684 15 C 0.565 3.435 16 O -0.565 6.565 17 C 0.100 3.900 18 C -0.143 4.143 19 C -0.046 4.046 20 C -0.101 4.101 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.093 4.093 24 C -0.109 4.109 25 C 0.097 3.903 26 N -0.458 5.458 27 C 0.129 3.871 28 H 0.249 0.751 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.418 0.582 34 H 0.150 0.850 35 H 0.185 0.815 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.028 0.972 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -31.306 4.355 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.061 3.939 11 C -0.167 4.167 12 C 0.036 3.964 13 H 0.102 0.898 14 N -0.335 5.335 15 C 0.350 3.650 16 O -0.443 6.443 17 C -0.053 4.053 18 C -0.164 4.164 19 C -0.072 4.072 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.027 4.027 26 N -0.170 5.170 27 C 0.003 3.997 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.256 0.744 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.158 0.842 40 H 0.046 0.954 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.869 -30.245 4.179 30.590 hybrid contribution 0.536 1.004 -0.235 1.162 sum 2.405 -29.242 3.945 29.604 Atomic orbital electron populations 1.70166 1.06194 1.25443 1.57982 1.25677 0.96753 1.01008 1.02252 0.84961 0.78012 0.79122 0.76913 1.19282 1.21661 1.21462 1.19466 0.90932 0.83626 1.43495 0.90376 1.44684 1.02678 1.00659 1.87183 1.20935 0.83450 0.90993 0.98552 1.23011 0.96240 0.95504 1.01992 1.21956 0.95961 0.79432 0.99019 0.89827 1.45679 1.51710 1.09753 1.26310 1.18361 0.78317 0.84981 0.83320 1.90768 1.49719 1.78547 1.25250 1.21096 0.97639 0.93841 0.92709 1.21829 0.98874 0.94269 1.01431 1.21879 0.95756 0.95346 0.94215 1.19322 0.98542 0.96371 0.96081 1.21395 0.99734 0.93615 0.97251 1.21486 0.95196 1.01341 0.94084 1.21365 0.97128 0.92015 1.00762 1.21091 0.99762 0.97953 0.93931 1.19302 0.98146 0.88497 0.96756 1.67720 1.18644 1.18113 1.12556 1.21907 0.95182 0.85308 0.97348 0.94145 0.96444 0.96349 0.89113 0.89423 0.74370 0.83179 0.79802 0.81864 0.81884 0.82248 0.84226 0.95403 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.31 21.65 0.22 -57.94 16 2 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.25 -14.55 10.28 84.03 0.86 -13.69 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -34.12 3.39 -691.94 -2.35 -36.47 16 10 C 0.19 9.42 5.37 86.73 0.47 9.89 16 11 C -0.13 -4.79 6.60 31.78 0.21 -4.58 16 12 C 0.14 5.49 3.43 46.40 0.16 5.65 16 13 H 0.08 3.53 7.53 -2.39 -0.02 3.51 16 14 N -0.68 -22.23 5.18 -438.37 -2.27 -24.50 16 15 C 0.56 19.08 7.81 86.91 0.68 19.75 16 16 O -0.56 -22.57 15.92 -3.73 -0.06 -22.63 16 17 C 0.10 2.79 6.75 42.30 0.29 3.08 16 18 C -0.14 -3.23 9.54 22.36 0.21 -3.02 16 19 C -0.05 -0.73 9.88 22.48 0.22 -0.51 16 20 C -0.10 -1.70 5.75 -21.22 -0.12 -1.83 16 21 C -0.10 -0.98 9.77 22.31 0.22 -0.77 16 22 C -0.10 -0.78 9.96 22.07 0.22 -0.56 16 23 C -0.09 -0.92 9.94 22.04 0.22 -0.70 16 24 C -0.11 -1.78 9.99 22.38 0.22 -1.56 16 25 C 0.10 2.09 6.61 40.47 0.27 2.36 16 26 N -0.46 -12.01 9.47 -177.76 -1.68 -13.69 16 27 C 0.13 5.92 6.93 86.87 0.60 6.52 16 28 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 29 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 30 H 0.02 1.02 7.51 -2.39 -0.02 1.00 16 31 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 32 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 33 H 0.42 11.88 7.87 -92.71 -0.73 11.15 16 34 H 0.15 3.30 7.60 -2.91 -0.02 3.27 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.92 345.97 1.41 -75.51 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.33 Total: 13.73 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 5.19 Total: 16.76 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -6.08 Total: -132.60 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -76.92 1.41 -75.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016073865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.422 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds