Wall clock time and date at job start Fri Apr 10 2020 22:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00179 * 2 1 4 4 H 1.48497 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46830 * 300.00187 * 3 2 1 6 6 H 1.48494 * 109.47139 * 59.99944 * 3 2 1 7 7 C 1.38812 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00175 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65055 * 359.97019 * 9 7 2 11 11 C 1.54321 * 107.27176 * 178.99202 * 10 9 7 12 12 C 1.55155 * 102.94274 * 337.80821 * 11 10 9 13 13 H 1.09002 * 111.00479 * 153.61789 * 12 11 10 14 14 N 1.46505 * 111.00373 * 277.42828 * 12 11 10 15 15 C 1.34777 * 119.99718 * 204.99723 * 14 12 11 16 16 O 1.21599 * 120.00196 * 0.02562 * 15 14 12 17 17 C 1.47456 * 119.99433 * 179.97438 * 15 14 12 18 18 C 1.38858 * 120.46401 * 354.15148 * 17 15 14 19 19 C 1.38899 * 120.67524 * 180.02562 * 18 17 15 20 20 C 1.36370 * 121.27229 * 359.97438 * 19 18 17 21 21 C 1.40396 * 119.98840 * 0.02562 * 20 19 18 22 22 C 1.40466 * 121.95403 * 180.02562 * 21 20 19 23 23 N 1.31274 * 119.88508 * 179.97438 * 22 21 20 24 24 C 1.32553 * 122.73153 * 359.72240 * 23 22 21 25 25 C 1.36330 * 121.82086 * 0.55241 * 24 23 22 26 26 C 1.40298 * 118.70271 * 359.46873 * 25 24 23 27 27 C 1.47428 * 125.64786 * 180.02562 * 9 7 2 28 28 H 0.97004 * 120.00048 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.87532 * 59.57393 * 10 9 7 30 30 H 1.09001 * 109.88215 * 298.40798 * 10 9 7 31 31 H 1.09005 * 110.71725 * 219.44315 * 11 10 9 32 32 H 1.08998 * 110.72104 * 96.17079 * 11 10 9 33 33 H 0.97002 * 120.00034 * 25.00570 * 14 12 11 34 34 H 1.07999 * 119.66200 * 0.04141 * 18 17 15 35 35 H 1.08006 * 119.36156 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.00572 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.05499 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.09131 * 180.27164 * 24 23 22 39 39 H 1.08002 * 120.65319 * 179.75052 * 25 24 23 40 40 H 1.08995 * 110.36818 * 85.24083 * 27 9 7 41 41 H 1.09000 * 110.36474 * 322.91309 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1376 -2.5328 -0.0016 11 6 -0.4485 -4.0441 -0.0290 12 6 0.8519 -4.6559 -0.6138 13 1 0.9833 -5.6855 -0.2810 14 7 0.8586 -4.5750 -2.0766 15 6 1.5905 -5.4482 -2.7964 16 8 2.2450 -6.3035 -2.2318 17 6 1.5968 -5.3671 -4.2687 18 6 0.7608 -4.4758 -4.9282 19 6 0.7628 -4.3961 -6.3150 20 6 1.5809 -5.1853 -7.0683 21 6 2.4427 -6.1008 -6.4435 22 6 3.3028 -6.9330 -7.1789 23 7 4.0923 -7.7743 -6.5527 24 6 4.1251 -7.8786 -5.2317 25 6 3.3253 -7.1190 -4.4305 26 6 2.4541 -6.1962 -5.0287 27 6 1.9334 -3.7312 -0.0017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5575 -2.0518 -0.8851 30 1 -0.5544 -2.0848 0.9004 31 1 -1.2986 -4.2512 -0.6791 32 1 -0.6317 -4.4184 0.9782 33 1 0.3363 -3.8928 -2.5270 34 1 0.1026 -3.8379 -4.3571 35 1 0.1041 -3.6949 -6.8060 36 1 1.5654 -5.1066 -8.1453 37 1 3.3144 -6.8808 -8.2576 38 1 4.8011 -8.5881 -4.7776 39 1 3.3647 -7.2223 -3.3562 40 1 2.1663 -4.0423 1.0166 41 1 2.8329 -3.7403 -0.6172 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016263573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:43 Heat of formation + Delta-G solvation = 54.165256 kcal Electronic energy + Delta-G solvation = -25093.627612 eV Core-core repulsion = 21553.283860 eV Total energy + Delta-G solvation = -3540.343752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13415 -39.47240 -37.50877 -37.08830 -33.94687 -32.97784 -32.08414 -31.14371 -29.93719 -29.12988 -27.30012 -24.89683 -24.45219 -23.59227 -23.32345 -20.85486 -20.14989 -19.97546 -18.20661 -17.91191 -16.93963 -16.58120 -16.27332 -15.85419 -15.18575 -14.95008 -14.71024 -14.53985 -14.14794 -14.01791 -13.77341 -13.56346 -13.11346 -12.71235 -12.56170 -12.19319 -12.12875 -11.97640 -11.84011 -11.74844 -11.01681 -10.94886 -10.80053 -10.40668 -10.26089 -10.15925 -10.01288 -9.89786 -9.73711 -9.28040 -9.26481 -8.87285 -8.61592 -8.19503 -6.88077 -5.77634 -3.10282 -0.00618 0.74215 1.57915 2.62458 3.23288 3.34686 3.36258 3.42543 3.44296 4.01346 4.31500 4.43105 4.45729 4.49735 4.59742 4.75210 4.82589 4.95055 5.20108 5.26324 5.36642 5.42467 5.47364 5.56005 5.70122 5.73085 5.76231 5.82363 5.84339 6.06451 6.12925 6.24201 6.30073 6.40110 6.42631 6.53591 6.62702 6.65729 6.95870 7.46916 7.49649 7.71718 7.75044 7.86180 8.18742 8.36789 9.16612 9.76335 10.41582 11.34321 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.003575 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.260169 B = 7830.219705 C = 8325.398380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.093 0.907 14 N -0.694 5.694 15 C 0.560 3.440 16 O -0.542 6.542 17 C -0.123 4.123 18 C -0.054 4.054 19 C -0.127 4.127 20 C -0.064 4.064 21 C -0.121 4.121 22 C 0.137 3.863 23 N -0.489 5.489 24 C 0.068 3.932 25 C -0.150 4.150 26 C 0.011 3.989 27 C 0.125 3.875 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.030 0.970 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -11.976 -13.010 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.111 0.889 14 N -0.343 5.343 15 C 0.348 3.652 16 O -0.423 6.423 17 C -0.126 4.126 18 C -0.075 4.075 19 C -0.145 4.145 20 C -0.084 4.084 21 C -0.123 4.123 22 C -0.034 4.034 23 N -0.197 5.197 24 C -0.075 4.075 25 C -0.169 4.169 26 C 0.005 3.995 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.320 -12.943 -12.901 18.277 hybrid contribution -0.435 2.000 0.290 2.067 sum -0.115 -10.943 -12.611 16.697 Atomic orbital electron populations 1.69955 1.04814 1.24894 1.57463 1.24766 0.95724 0.97582 1.02331 0.86058 0.78797 0.83782 0.77241 1.20543 1.21792 1.21730 1.19108 0.90484 0.82357 1.43360 0.90483 1.44495 1.01461 0.99898 1.87258 1.21185 0.84589 0.87898 1.01311 1.23240 0.95593 1.00065 1.00386 1.22213 0.97637 0.99709 0.78297 0.88883 1.45787 1.47773 1.33164 1.07583 1.17960 0.79573 0.81506 0.86185 1.90558 1.42945 1.36654 1.72094 1.19934 0.99780 0.99464 0.93390 1.21597 0.95873 0.94929 0.95076 1.20869 1.00054 1.00107 0.93481 1.21159 0.93541 0.93432 1.00288 1.19022 1.00030 0.99839 0.93395 1.23138 0.90283 0.90143 0.99868 1.67381 1.20927 1.19665 1.11715 1.22331 0.97985 0.98545 0.88627 1.22986 0.94575 0.94570 1.04726 1.17938 0.94790 0.94776 0.91983 1.21946 0.94736 0.86349 0.97179 0.93841 0.93626 0.93656 0.91559 0.90763 0.76150 0.84713 0.84724 0.84582 0.82055 0.82935 0.80626 0.95275 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.05 10.31 55.49 0.57 -25.47 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.79 3.39 -170.08 -0.58 -15.36 16 10 C 0.17 3.93 5.36 -3.06 -0.02 3.91 16 11 C -0.15 -2.61 6.55 -24.90 -0.16 -2.77 16 12 C 0.13 2.18 3.43 -65.78 -0.23 1.95 16 13 H 0.09 1.54 7.54 -51.93 -0.39 1.14 16 14 N -0.69 -11.04 5.14 -52.79 -0.27 -11.31 16 15 C 0.56 9.06 7.73 -12.51 -0.10 8.96 16 16 O -0.54 -9.83 13.14 5.28 0.07 -9.76 16 17 C -0.12 -1.73 5.90 -104.70 -0.62 -2.34 16 18 C -0.05 -0.62 9.51 -39.11 -0.37 -1.00 16 19 C -0.13 -1.18 9.92 -40.01 -0.40 -1.58 16 20 C -0.06 -0.58 9.78 -39.44 -0.39 -0.96 16 21 C -0.12 -1.40 5.74 -106.88 -0.61 -2.02 16 22 C 0.14 1.48 11.05 -16.95 -0.19 1.30 16 23 N -0.49 -6.24 10.30 -13.11 -0.14 -6.38 16 24 C 0.07 0.86 11.07 -17.93 -0.20 0.66 16 25 C -0.15 -2.12 9.28 -39.49 -0.37 -2.49 16 26 C 0.01 0.15 5.77 -106.55 -0.61 -0.46 16 27 C 0.13 2.59 6.93 -2.53 -0.02 2.57 16 28 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.05 1.11 7.38 -51.93 -0.38 0.72 16 30 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 6.00 6.74 -40.82 -0.28 5.73 16 34 H 0.14 1.37 6.43 -52.49 -0.34 1.03 16 35 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.18 2.70 5.06 -52.49 -0.27 2.43 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -32.18 338.54 -9.76 -41.94 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.97 Total: 5.37 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -4.52 Total: -0.86 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.41 Total: -58.53 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.18 -9.76 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016263573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.101 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds