Wall clock time and date at job start Fri Apr 10 2020 22:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00179 * 2 1 4 4 H 1.48497 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46830 * 300.00187 * 3 2 1 6 6 H 1.48494 * 109.47139 * 59.99944 * 3 2 1 7 7 C 1.38812 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00175 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.65055 * 359.97019 * 9 7 2 11 11 C 1.54321 * 107.27176 * 178.99202 * 10 9 7 12 12 C 1.55155 * 102.94274 * 337.80821 * 11 10 9 13 13 H 1.09002 * 111.00479 * 153.61789 * 12 11 10 14 14 N 1.46505 * 111.00373 * 277.42828 * 12 11 10 15 15 C 1.34777 * 119.99718 * 204.99723 * 14 12 11 16 16 O 1.21599 * 120.00196 * 0.02562 * 15 14 12 17 17 C 1.47456 * 119.99433 * 179.97438 * 15 14 12 18 18 C 1.38858 * 120.46401 * 354.15148 * 17 15 14 19 19 C 1.38899 * 120.67524 * 180.02562 * 18 17 15 20 20 C 1.36370 * 121.27229 * 359.97438 * 19 18 17 21 21 C 1.40396 * 119.98840 * 0.02562 * 20 19 18 22 22 C 1.40466 * 121.95403 * 180.02562 * 21 20 19 23 23 N 1.31274 * 119.88508 * 179.97438 * 22 21 20 24 24 C 1.32553 * 122.73153 * 359.72240 * 23 22 21 25 25 C 1.36330 * 121.82086 * 0.55241 * 24 23 22 26 26 C 1.40298 * 118.70271 * 359.46873 * 25 24 23 27 27 C 1.47428 * 125.64786 * 180.02562 * 9 7 2 28 28 H 0.97004 * 120.00048 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.87532 * 59.57393 * 10 9 7 30 30 H 1.09001 * 109.88215 * 298.40798 * 10 9 7 31 31 H 1.09005 * 110.71725 * 219.44315 * 11 10 9 32 32 H 1.08998 * 110.72104 * 96.17079 * 11 10 9 33 33 H 0.97002 * 120.00034 * 25.00570 * 14 12 11 34 34 H 1.07999 * 119.66200 * 0.04141 * 18 17 15 35 35 H 1.08006 * 119.36156 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.00572 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.05499 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.09131 * 180.27164 * 24 23 22 39 39 H 1.08002 * 120.65319 * 179.75052 * 25 24 23 40 40 H 1.08995 * 110.36818 * 85.24083 * 27 9 7 41 41 H 1.09000 * 110.36474 * 322.91309 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1376 -2.5328 -0.0016 11 6 -0.4485 -4.0441 -0.0290 12 6 0.8519 -4.6559 -0.6138 13 1 0.9833 -5.6855 -0.2810 14 7 0.8586 -4.5750 -2.0766 15 6 1.5905 -5.4482 -2.7964 16 8 2.2450 -6.3035 -2.2318 17 6 1.5968 -5.3671 -4.2687 18 6 0.7608 -4.4758 -4.9282 19 6 0.7628 -4.3961 -6.3150 20 6 1.5809 -5.1853 -7.0683 21 6 2.4427 -6.1008 -6.4435 22 6 3.3028 -6.9330 -7.1789 23 7 4.0923 -7.7743 -6.5527 24 6 4.1251 -7.8786 -5.2317 25 6 3.3253 -7.1190 -4.4305 26 6 2.4541 -6.1962 -5.0287 27 6 1.9334 -3.7312 -0.0017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5575 -2.0518 -0.8851 30 1 -0.5544 -2.0848 0.9004 31 1 -1.2986 -4.2512 -0.6791 32 1 -0.6317 -4.4184 0.9782 33 1 0.3363 -3.8928 -2.5270 34 1 0.1026 -3.8379 -4.3571 35 1 0.1041 -3.6949 -6.8060 36 1 1.5654 -5.1066 -8.1453 37 1 3.3144 -6.8808 -8.2576 38 1 4.8011 -8.5881 -4.7776 39 1 3.3647 -7.2223 -3.3562 40 1 2.1663 -4.0423 1.0166 41 1 2.8329 -3.7403 -0.6172 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016263573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:42 Heat of formation + Delta-G solvation = 33.818654 kcal Electronic energy + Delta-G solvation = -25094.509907 eV Core-core repulsion = 21553.283860 eV Total energy + Delta-G solvation = -3541.226047 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.08798 -40.70339 -38.93598 -38.11039 -35.53424 -33.98663 -33.68516 -32.14583 -31.20051 -30.58443 -28.92457 -26.55420 -25.59973 -24.56641 -24.31401 -22.17930 -21.79569 -21.40470 -19.24926 -18.97775 -18.65097 -17.63002 -17.32939 -17.07534 -16.65295 -16.24320 -16.11239 -15.70625 -15.57979 -15.17530 -15.07890 -14.67209 -14.30001 -14.07055 -13.84357 -13.62899 -13.53035 -13.04950 -12.95134 -12.89494 -12.83437 -12.67329 -12.32626 -12.07803 -12.00551 -11.83643 -11.61627 -11.17459 -10.97966 -10.74095 -10.31264 -10.21737 -10.10932 -9.11125 -8.87308 -7.86605 -5.20694 -0.88581 -0.13876 0.62689 1.44688 1.45899 1.55556 1.69490 2.06928 2.25878 2.47901 3.09555 3.32380 3.50030 3.51223 3.62273 3.65903 3.77306 3.80239 3.91107 3.94979 4.04997 4.19059 4.29444 4.40298 4.55317 4.65812 4.68337 4.73870 4.82532 4.88816 4.93541 4.98950 5.01970 5.08518 5.26784 5.36526 5.43291 5.52495 5.66203 5.68322 5.75702 5.78421 6.18734 6.48448 6.96286 7.10928 7.14104 7.75559 8.39643 9.23344 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.003575 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.260169 B = 7830.219705 C = 8325.398380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.134 4.134 12 C 0.140 3.860 13 H 0.105 0.895 14 N -0.694 5.694 15 C 0.558 3.442 16 O -0.570 6.570 17 C -0.162 4.162 18 C -0.043 4.043 19 C -0.134 4.134 20 C -0.039 4.039 21 C -0.138 4.138 22 C 0.152 3.848 23 N -0.513 5.513 24 C 0.070 3.930 25 C -0.182 4.182 26 C -0.006 4.006 27 C 0.122 3.878 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.010 0.990 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.407 0.593 34 H 0.143 0.857 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.206 0.794 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.033 0.967 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -11.942 -15.906 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.249 4.249 3 Si 0.801 3.199 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.059 3.941 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.123 0.877 14 N -0.343 5.343 15 C 0.347 3.653 16 O -0.452 6.452 17 C -0.165 4.165 18 C -0.063 4.063 19 C -0.152 4.152 20 C -0.059 4.059 21 C -0.140 4.140 22 C -0.020 4.020 23 N -0.221 5.221 24 C -0.072 4.072 25 C -0.201 4.201 26 C -0.012 4.012 27 C -0.004 4.004 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.244 0.756 34 H 0.161 0.839 35 H 0.188 0.812 36 H 0.201 0.799 37 H 0.222 0.778 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.051 0.949 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.308 -12.931 -15.800 20.420 hybrid contribution -0.218 1.994 1.091 2.284 sum -0.526 -10.937 -14.709 18.337 Atomic orbital electron populations 1.70139 1.05841 1.25200 1.58081 1.25484 0.96604 1.00375 1.02470 0.85104 0.77923 0.79934 0.76915 1.19894 1.21487 1.21857 1.19361 0.90633 0.83890 1.43271 0.91119 1.44714 1.02527 1.00445 1.87078 1.20977 0.83294 0.91380 0.98486 1.23097 0.96305 0.95603 1.02198 1.22007 0.96135 0.99264 0.79132 0.87676 1.45735 1.48119 1.33487 1.06964 1.18395 0.78687 0.80791 0.87395 1.90548 1.43961 1.37727 1.72978 1.19796 1.02515 1.02174 0.91973 1.21883 0.94456 0.93421 0.96572 1.21281 1.00713 1.00841 0.92355 1.21696 0.90892 0.90779 1.02519 1.19338 1.01233 1.01089 0.92330 1.23890 0.88260 0.88147 1.01668 1.67481 1.22280 1.21051 1.11333 1.22534 0.97527 0.98168 0.88987 1.22824 0.96689 0.96649 1.03926 1.18187 0.94750 0.94714 0.93573 1.22052 0.95243 0.85743 0.97358 0.94258 0.95871 0.97172 0.88649 0.89008 0.75619 0.83902 0.81236 0.79940 0.77763 0.81619 0.82800 0.94946 0.95639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.23 10.31 21.65 0.22 -54.01 16 2 C -0.06 -3.10 5.49 84.86 0.47 -2.63 16 3 Si 0.97 45.17 29.55 68.60 2.03 47.19 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.24 -13.53 10.28 84.03 0.86 -12.67 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.62 -31.10 3.39 -692.00 -2.35 -33.45 16 10 C 0.18 8.38 5.36 86.73 0.47 8.84 16 11 C -0.13 -4.38 6.55 31.78 0.21 -4.17 16 12 C 0.14 4.79 3.43 46.38 0.16 4.95 16 13 H 0.11 3.41 7.54 -2.39 -0.02 3.39 16 14 N -0.69 -22.16 5.14 -439.19 -2.26 -24.42 16 15 C 0.56 18.53 7.73 86.67 0.67 19.20 16 16 O -0.57 -21.70 13.14 -4.03 -0.05 -21.75 16 17 C -0.16 -4.55 5.90 -19.92 -0.12 -4.67 16 18 C -0.04 -0.92 9.51 22.58 0.21 -0.70 16 19 C -0.13 -1.98 9.92 21.99 0.22 -1.76 16 20 C -0.04 -0.53 9.78 22.36 0.22 -0.31 16 21 C -0.14 -2.86 5.74 -21.33 -0.12 -2.98 16 22 C 0.15 2.82 11.05 85.32 0.94 3.76 16 23 N -0.51 -12.40 10.30 -195.40 -2.01 -14.41 16 24 C 0.07 1.80 11.07 84.14 0.93 2.73 16 25 C -0.18 -5.39 9.28 22.33 0.21 -5.19 16 26 C -0.01 -0.18 5.77 -21.11 -0.12 -0.30 16 27 C 0.12 5.19 6.93 86.85 0.60 5.79 16 28 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 30 H 0.01 0.53 7.50 -2.39 -0.02 0.51 16 31 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.41 12.06 6.74 -92.71 -0.62 11.43 16 34 H 0.14 2.69 6.43 -2.91 -0.02 2.67 16 35 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.15 5.17 5.06 -2.91 -0.01 5.16 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -73.26 338.54 1.83 -71.43 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.44 Total: 19.50 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.80 Total: 9.91 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.39 Total: -126.29 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.26 1.83 -71.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016263573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.251 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds