Wall clock time and date at job start Fri Apr 10 2020 22:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47088 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47181 * 119.99731 * 3 2 1 6 6 H 1.48496 * 109.47303 * 240.00238 * 3 2 1 7 7 C 1.38812 * 119.99545 * 180.27955 * 2 1 3 8 8 H 1.08007 * 119.99929 * 208.10678 * 7 2 1 9 9 N 1.36937 * 120.00104 * 28.09912 * 7 2 1 10 10 C 1.47424 * 125.64880 * 19.20881 * 9 7 2 11 11 C 1.55126 * 104.72498 * 155.81156 * 10 9 7 12 12 C 1.55158 * 101.48699 * 37.29393 * 11 10 9 13 13 H 1.09002 * 110.72464 * 205.97426 * 12 11 10 14 14 N 1.46496 * 110.72000 * 82.69278 * 12 11 10 15 15 C 1.34782 * 120.00234 * 160.02534 * 14 12 11 16 16 O 1.21603 * 119.99405 * 0.02562 * 15 14 12 17 17 C 1.47442 * 120.00660 * 180.02562 * 15 14 12 18 18 C 1.38867 * 120.45547 * 354.85027 * 17 15 14 19 19 C 1.38903 * 120.67372 * 179.71808 * 18 17 15 20 20 C 1.36371 * 121.27094 * 0.56281 * 19 18 17 21 21 C 1.40399 * 119.98602 * 359.72255 * 20 19 18 22 22 C 1.40469 * 121.94678 * 179.97438 * 21 20 19 23 23 N 1.31279 * 119.87684 * 180.02562 * 22 21 20 24 24 C 1.32554 * 122.73407 * 359.97438 * 23 22 21 25 25 C 1.36327 * 121.82329 * 359.97438 * 24 23 22 26 26 C 1.40292 * 118.69809 * 0.02562 * 25 24 23 27 27 C 1.47021 * 125.64873 * 199.50672 * 9 7 2 28 28 H 0.97000 * 120.00260 * 185.55730 * 1 2 3 29 29 H 1.09003 * 110.36223 * 274.74382 * 10 9 7 30 30 H 1.08997 * 110.36657 * 37.05969 * 10 9 7 31 31 H 1.08996 * 111.19549 * 279.19358 * 11 10 9 32 32 H 1.08998 * 110.94043 * 155.28388 * 11 10 9 33 33 H 0.96994 * 120.00563 * 340.02973 * 14 12 11 34 34 H 1.07992 * 119.66131 * 359.97438 * 18 17 15 35 35 H 1.08003 * 119.36396 * 180.28457 * 19 18 17 36 36 H 1.08008 * 120.01007 * 179.69829 * 20 19 18 37 37 H 1.07998 * 120.06730 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.08557 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.65123 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.88525 * 300.45107 * 27 9 7 41 41 H 1.09000 * 109.88080 * 61.61084 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 2.9947 -1.2596 0.4345 9 7 1.4465 -2.3154 -0.5699 10 6 0.3316 -2.3191 -1.5345 11 6 0.4841 -3.6550 -2.3082 12 6 0.9559 -4.6122 -1.1819 13 1 1.5335 -5.4391 -1.5953 14 7 -0.1868 -5.1100 -0.4122 15 6 -0.0652 -6.2311 0.3260 16 8 0.9933 -6.8291 0.3534 17 6 -1.2154 -6.7325 1.1003 18 6 -2.3947 -6.0019 1.1618 19 6 -3.4831 -6.4727 1.8851 20 6 -3.4247 -7.6545 2.5631 21 6 -2.2502 -8.4232 2.5334 22 6 -2.1447 -9.6459 3.2168 23 7 -1.0265 -10.3315 3.1617 24 6 0.0329 -9.9213 2.4787 25 6 0.0294 -8.7495 1.7820 26 6 -1.1316 -7.9619 1.7942 27 6 1.8488 -3.7053 -0.3090 28 1 -0.4850 -0.8361 0.0813 29 1 -0.6236 -2.2884 -1.0103 30 1 0.4179 -1.4738 -2.2172 31 1 1.2371 -3.5728 -3.0919 32 1 -0.4720 -3.9778 -2.7201 33 1 -1.0310 -4.6329 -0.4338 34 1 -2.4678 -5.0600 0.6385 35 1 -4.3916 -5.8894 1.9148 36 1 -4.2817 -7.9990 3.1231 37 1 -2.9819 -10.0214 3.7865 38 1 0.9234 -10.5324 2.4740 39 1 0.9032 -8.4336 1.2315 40 1 2.8956 -3.8451 -0.5789 41 1 1.7006 -3.9426 0.7445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016263577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:46 Heat of formation + Delta-G solvation = 50.852496 kcal Electronic energy + Delta-G solvation = -25006.846386 eV Core-core repulsion = 21466.358982 eV Total energy + Delta-G solvation = -3540.487404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.21558 -39.61149 -37.66414 -37.20680 -34.20747 -33.05537 -32.20979 -31.21951 -29.99183 -29.11451 -27.44412 -24.88169 -24.36252 -23.66398 -23.40648 -20.93623 -20.38266 -20.08214 -18.29342 -17.98882 -17.50954 -16.69208 -16.39573 -16.00181 -15.26568 -15.05796 -14.67006 -14.53990 -14.18830 -14.05944 -13.73421 -13.64341 -13.27802 -13.09868 -12.78223 -12.35943 -12.25147 -12.10249 -11.94983 -11.82024 -11.05660 -10.79088 -10.76488 -10.55085 -10.40970 -10.32470 -10.04320 -9.98859 -9.59761 -9.35987 -9.34231 -8.93275 -8.43564 -8.26988 -6.97607 -6.15015 -3.20467 -0.08094 0.67308 1.50834 2.54675 3.13673 3.21873 3.48208 3.51562 3.69343 3.94141 4.25859 4.34744 4.41535 4.51571 4.56058 4.68156 4.74164 4.87611 5.01206 5.16524 5.19087 5.30430 5.35785 5.48499 5.51853 5.63810 5.66310 5.75339 5.77139 5.96913 5.99051 6.05677 6.15471 6.19359 6.29700 6.45574 6.59136 6.61306 6.80575 6.87115 6.92568 7.55386 7.78367 7.80496 8.24271 8.45268 8.97133 9.76601 10.31964 11.17189 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.003194 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.710390 B = 8764.871578 C = 9149.564087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.025 4.025 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.336 4.336 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.144 4.144 12 C 0.132 3.868 13 H 0.094 0.906 14 N -0.703 5.703 15 C 0.561 3.439 16 O -0.536 6.536 17 C -0.124 4.124 18 C -0.055 4.055 19 C -0.128 4.128 20 C -0.062 4.062 21 C -0.121 4.121 22 C 0.138 3.862 23 N -0.488 5.488 24 C 0.070 3.930 25 C -0.151 4.151 26 C 0.011 3.989 27 C 0.126 3.874 28 H 0.266 0.734 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.035 0.965 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -16.401 1.172 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.464 4.464 8 H 0.081 0.919 9 N -0.328 5.328 10 C 0.017 3.983 11 C -0.183 4.183 12 C 0.027 3.973 13 H 0.112 0.888 14 N -0.353 5.353 15 C 0.349 3.651 16 O -0.416 6.416 17 C -0.127 4.127 18 C -0.075 4.075 19 C -0.146 4.146 20 C -0.082 4.082 21 C -0.123 4.123 22 C -0.033 4.033 23 N -0.196 5.196 24 C -0.073 4.073 25 C -0.170 4.170 26 C 0.005 3.995 27 C 0.000 4.000 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.053 0.947 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.876 -15.874 1.541 17.787 hybrid contribution -0.333 -0.503 -0.212 0.640 sum -8.209 -16.378 1.329 18.368 Atomic orbital electron populations 1.70811 1.06632 1.29926 1.48197 1.25774 0.96423 1.01141 0.99301 0.83523 0.74840 0.75968 0.76253 1.21084 1.21998 1.22061 1.19737 0.99541 0.88193 1.38920 0.91870 1.44562 1.39784 1.00446 1.48042 1.21584 0.91637 0.94058 0.91026 1.23182 1.01207 0.96974 0.96930 1.22029 0.87043 0.96233 0.91989 0.88850 1.45918 1.15724 1.25979 1.47662 1.17970 0.87353 0.80598 0.79159 1.90574 1.29019 1.57720 1.64260 1.19912 0.95004 0.96057 1.01766 1.21589 0.91735 0.98513 0.95651 1.20870 0.99007 0.96764 0.97957 1.21178 0.96417 0.93810 0.96805 1.19027 0.94871 0.97734 1.00669 1.23156 0.95605 0.89594 0.94980 1.67392 1.00128 1.34280 1.17822 1.22345 0.96367 0.94883 0.93729 1.22984 0.99931 0.94509 0.99567 1.17933 0.93735 0.93271 0.94535 1.21733 0.96001 0.85638 0.96666 0.92270 0.95815 0.92890 0.89926 0.91217 0.76487 0.84812 0.84657 0.84491 0.81982 0.82875 0.80633 0.94716 0.95403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.91 13.00 55.49 0.72 -26.19 16 2 C -0.02 -0.70 5.10 -17.43 -0.09 -0.79 16 3 Si 1.06 25.16 30.00 -169.99 -5.10 20.06 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.34 -9.48 10.00 -15.06 -0.15 -9.64 16 8 H 0.06 1.81 7.97 -52.48 -0.42 1.39 16 9 N -0.60 -14.96 3.26 -169.93 -0.55 -15.52 16 10 C 0.14 3.09 5.35 -2.41 -0.01 3.07 16 11 C -0.14 -2.34 6.65 -24.46 -0.16 -2.51 16 12 C 0.13 2.23 3.24 -66.10 -0.21 2.02 16 13 H 0.09 1.53 7.70 -51.93 -0.40 1.13 16 14 N -0.70 -10.70 5.06 -53.09 -0.27 -10.96 16 15 C 0.56 8.89 7.73 -12.51 -0.10 8.79 16 16 O -0.54 -9.69 13.22 5.27 0.07 -9.62 16 17 C -0.12 -1.69 5.90 -104.70 -0.62 -2.31 16 18 C -0.05 -0.60 9.52 -39.10 -0.37 -0.97 16 19 C -0.13 -1.13 9.92 -40.01 -0.40 -1.53 16 20 C -0.06 -0.53 9.78 -39.44 -0.39 -0.92 16 21 C -0.12 -1.36 5.74 -106.88 -0.61 -1.97 16 22 C 0.14 1.44 11.05 -16.95 -0.19 1.26 16 23 N -0.49 -6.08 10.30 -13.11 -0.14 -6.21 16 24 C 0.07 0.86 11.07 -17.93 -0.20 0.66 16 25 C -0.15 -2.09 9.28 -39.50 -0.37 -2.46 16 26 C 0.01 0.15 5.77 -106.55 -0.61 -0.46 16 27 C 0.13 2.71 6.98 -3.06 -0.02 2.69 16 28 H 0.27 7.77 6.15 -40.82 -0.25 7.51 16 29 H 0.02 0.54 6.80 -51.93 -0.35 0.18 16 30 H 0.05 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 5.37 6.68 -40.82 -0.27 5.10 16 34 H 0.13 1.27 6.42 -52.49 -0.34 0.94 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.18 2.65 5.05 -52.49 -0.27 2.38 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.65 8.04 -51.93 -0.42 0.24 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -33.94 338.81 -9.55 -43.49 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.89 Total: 4.90 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -4.50 Total: -5.05 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.24 Total: -58.89 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.94 -9.55 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016263577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.347 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds