Wall clock time and date at job start Fri Apr 10 2020 22:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47088 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47181 * 119.99731 * 3 2 1 6 6 H 1.48496 * 109.47303 * 240.00238 * 3 2 1 7 7 C 1.38812 * 119.99545 * 180.27955 * 2 1 3 8 8 H 1.08007 * 119.99929 * 208.10678 * 7 2 1 9 9 N 1.36937 * 120.00104 * 28.09912 * 7 2 1 10 10 C 1.47424 * 125.64880 * 19.20881 * 9 7 2 11 11 C 1.55126 * 104.72498 * 155.81156 * 10 9 7 12 12 C 1.55158 * 101.48699 * 37.29393 * 11 10 9 13 13 H 1.09002 * 110.72464 * 205.97426 * 12 11 10 14 14 N 1.46496 * 110.72000 * 82.69278 * 12 11 10 15 15 C 1.34782 * 120.00234 * 160.02534 * 14 12 11 16 16 O 1.21603 * 119.99405 * 0.02562 * 15 14 12 17 17 C 1.47442 * 120.00660 * 180.02562 * 15 14 12 18 18 C 1.38867 * 120.45547 * 354.85027 * 17 15 14 19 19 C 1.38903 * 120.67372 * 179.71808 * 18 17 15 20 20 C 1.36371 * 121.27094 * 0.56281 * 19 18 17 21 21 C 1.40399 * 119.98602 * 359.72255 * 20 19 18 22 22 C 1.40469 * 121.94678 * 179.97438 * 21 20 19 23 23 N 1.31279 * 119.87684 * 180.02562 * 22 21 20 24 24 C 1.32554 * 122.73407 * 359.97438 * 23 22 21 25 25 C 1.36327 * 121.82329 * 359.97438 * 24 23 22 26 26 C 1.40292 * 118.69809 * 0.02562 * 25 24 23 27 27 C 1.47021 * 125.64873 * 199.50672 * 9 7 2 28 28 H 0.97000 * 120.00260 * 185.55730 * 1 2 3 29 29 H 1.09003 * 110.36223 * 274.74382 * 10 9 7 30 30 H 1.08997 * 110.36657 * 37.05969 * 10 9 7 31 31 H 1.08996 * 111.19549 * 279.19358 * 11 10 9 32 32 H 1.08998 * 110.94043 * 155.28388 * 11 10 9 33 33 H 0.96994 * 120.00563 * 340.02973 * 14 12 11 34 34 H 1.07992 * 119.66131 * 359.97438 * 18 17 15 35 35 H 1.08003 * 119.36396 * 180.28457 * 19 18 17 36 36 H 1.08008 * 120.01007 * 179.69829 * 20 19 18 37 37 H 1.07998 * 120.06730 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.08557 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.65123 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.88525 * 300.45107 * 27 9 7 41 41 H 1.09000 * 109.88080 * 61.61084 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 2.9947 -1.2596 0.4345 9 7 1.4465 -2.3154 -0.5699 10 6 0.3316 -2.3191 -1.5345 11 6 0.4841 -3.6550 -2.3082 12 6 0.9559 -4.6122 -1.1819 13 1 1.5335 -5.4391 -1.5953 14 7 -0.1868 -5.1100 -0.4122 15 6 -0.0652 -6.2311 0.3260 16 8 0.9933 -6.8291 0.3534 17 6 -1.2154 -6.7325 1.1003 18 6 -2.3947 -6.0019 1.1618 19 6 -3.4831 -6.4727 1.8851 20 6 -3.4247 -7.6545 2.5631 21 6 -2.2502 -8.4232 2.5334 22 6 -2.1447 -9.6459 3.2168 23 7 -1.0265 -10.3315 3.1617 24 6 0.0329 -9.9213 2.4787 25 6 0.0294 -8.7495 1.7820 26 6 -1.1316 -7.9619 1.7942 27 6 1.8488 -3.7053 -0.3090 28 1 -0.4850 -0.8361 0.0813 29 1 -0.6236 -2.2884 -1.0103 30 1 0.4179 -1.4738 -2.2172 31 1 1.2371 -3.5728 -3.0919 32 1 -0.4720 -3.9778 -2.7201 33 1 -1.0310 -4.6329 -0.4338 34 1 -2.4678 -5.0600 0.6385 35 1 -4.3916 -5.8894 1.9148 36 1 -4.2817 -7.9990 3.1231 37 1 -2.9819 -10.0214 3.7865 38 1 0.9234 -10.5324 2.4740 39 1 0.9032 -8.4336 1.2315 40 1 2.8956 -3.8451 -0.5789 41 1 1.7006 -3.9426 0.7445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016263577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:45 Heat of formation + Delta-G solvation = 28.698564 kcal Electronic energy + Delta-G solvation = -25007.807052 eV Core-core repulsion = 21466.358982 eV Total energy + Delta-G solvation = -3541.448070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15102 -40.82908 -39.12638 -38.16335 -35.81667 -34.07898 -33.76565 -32.19007 -31.17816 -30.62968 -29.05212 -26.42829 -25.65153 -24.62003 -24.36040 -22.27619 -21.97707 -21.54214 -19.62809 -19.18613 -18.88167 -17.69250 -17.42141 -17.14113 -16.48188 -16.23395 -16.18989 -15.70142 -15.66233 -15.26180 -15.17612 -14.98166 -14.68954 -14.32475 -13.91752 -13.66558 -13.57281 -13.08164 -12.99772 -12.75041 -12.65872 -12.62800 -12.49288 -12.27230 -12.00993 -11.89701 -11.61389 -11.21697 -11.04744 -10.54840 -10.38979 -10.28483 -10.16870 -9.15222 -9.04433 -8.36276 -5.39248 -0.93251 -0.17780 0.57972 1.56699 1.63567 1.64272 1.83422 1.96127 2.18761 2.60965 3.05322 3.14640 3.39028 3.47826 3.50374 3.56273 3.63198 3.73944 3.86504 3.87774 3.90102 4.12425 4.15295 4.35967 4.42273 4.47885 4.50848 4.67991 4.71744 4.80896 4.86364 4.88189 4.93619 5.02044 5.04929 5.22087 5.22483 5.32205 5.43819 5.63432 5.65084 5.74280 6.29839 6.37173 6.87211 6.92946 7.05902 7.65632 8.23728 8.95003 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.003194 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.710390 B = 8764.871578 C = 9149.564087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.070 4.070 3 Si 1.115 2.885 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.355 4.355 8 H 0.049 0.951 9 N -0.620 5.620 10 C 0.144 3.856 11 C -0.121 4.121 12 C 0.146 3.854 13 H 0.104 0.896 14 N -0.699 5.699 15 C 0.558 3.442 16 O -0.568 6.568 17 C -0.163 4.163 18 C -0.043 4.043 19 C -0.134 4.134 20 C -0.037 4.037 21 C -0.138 4.138 22 C 0.153 3.847 23 N -0.513 5.513 24 C 0.071 3.929 25 C -0.183 4.183 26 C -0.007 4.007 27 C 0.125 3.875 28 H 0.257 0.743 29 H 0.017 0.983 30 H 0.026 0.974 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.408 0.592 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.207 0.793 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.029 0.971 41 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 -17.039 1.438 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.267 4.267 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.484 4.484 8 H 0.067 0.933 9 N -0.348 5.348 10 C 0.019 3.981 11 C -0.159 4.159 12 C 0.041 3.959 13 H 0.122 0.878 14 N -0.350 5.350 15 C 0.347 3.653 16 O -0.450 6.450 17 C -0.166 4.166 18 C -0.063 4.063 19 C -0.152 4.152 20 C -0.057 4.057 21 C -0.140 4.140 22 C -0.019 4.019 23 N -0.221 5.221 24 C -0.071 4.071 25 C -0.203 4.203 26 C -0.012 4.012 27 C -0.001 4.001 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.162 0.838 35 H 0.189 0.811 36 H 0.202 0.798 37 H 0.223 0.777 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.047 0.953 41 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -10.591 -16.537 1.796 19.720 hybrid contribution 0.421 -0.362 -0.194 0.588 sum -10.171 -16.899 1.602 19.789 Atomic orbital electron populations 1.70910 1.07284 1.29429 1.50052 1.27116 0.96618 1.04180 0.98758 0.82854 0.73937 0.72111 0.77186 1.21224 1.20569 1.20647 1.19950 0.99264 0.89904 1.39255 0.93320 1.44795 1.40376 1.00901 1.48705 1.21580 0.90135 0.96049 0.90334 1.23088 1.03655 0.93070 0.96131 1.21788 0.87151 0.95712 0.91281 0.87790 1.45814 1.15493 1.26024 1.47653 1.18449 0.87817 0.80192 0.78806 1.90565 1.30498 1.58647 1.65283 1.19759 0.95382 0.97423 1.04039 1.21892 0.91317 0.98240 0.94811 1.21291 0.99377 0.97314 0.97221 1.21719 0.96326 0.92557 0.95072 1.19342 0.95187 0.98656 1.00797 1.23914 0.95848 0.88642 0.93460 1.67489 1.00836 1.35047 1.18742 1.22538 0.97147 0.94411 0.93003 1.22819 1.00048 0.95960 1.01437 1.18188 0.94583 0.93361 0.95114 1.21792 0.96907 0.85309 0.96094 0.93286 0.96564 0.95536 0.88702 0.87320 0.75419 0.83810 0.81101 0.79840 0.77673 0.81634 0.82884 0.95296 0.98178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.00 21.65 0.28 -55.53 16 2 C -0.07 -3.99 5.10 84.86 0.43 -3.55 16 3 Si 1.12 51.14 30.00 68.60 2.06 53.19 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.36 -20.62 10.00 84.03 0.84 -19.78 16 8 H 0.05 2.89 7.97 -2.91 -0.02 2.87 16 9 N -0.62 -31.78 3.26 -691.54 -2.26 -34.04 16 10 C 0.14 6.29 5.35 86.93 0.46 6.76 16 11 C -0.12 -3.77 6.65 32.06 0.21 -3.55 16 12 C 0.15 4.95 3.24 46.18 0.15 5.10 16 13 H 0.10 3.38 7.70 -2.39 -0.02 3.36 16 14 N -0.70 -21.37 5.06 -440.15 -2.23 -23.59 16 15 C 0.56 18.29 7.73 86.67 0.67 18.96 16 16 O -0.57 -21.88 13.22 -4.04 -0.05 -21.93 16 17 C -0.16 -4.47 5.90 -19.92 -0.12 -4.58 16 18 C -0.04 -0.86 9.52 22.58 0.21 -0.64 16 19 C -0.13 -1.84 9.92 21.99 0.22 -1.62 16 20 C -0.04 -0.47 9.78 22.36 0.22 -0.25 16 21 C -0.14 -2.76 5.74 -21.33 -0.12 -2.88 16 22 C 0.15 2.75 11.05 85.32 0.94 3.69 16 23 N -0.51 -12.16 10.30 -195.39 -2.01 -14.18 16 24 C 0.07 1.81 11.07 84.14 0.93 2.74 16 25 C -0.18 -5.38 9.28 22.32 0.21 -5.18 16 26 C -0.01 -0.18 5.77 -21.12 -0.12 -0.30 16 27 C 0.13 5.59 6.98 86.73 0.61 6.19 16 28 H 0.26 15.34 6.15 -92.71 -0.57 14.77 16 29 H 0.02 0.75 6.80 -2.39 -0.02 0.73 16 30 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.41 10.73 6.68 -92.71 -0.62 10.11 16 34 H 0.14 2.48 6.42 -2.91 -0.02 2.46 16 35 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.15 5.12 5.05 -2.91 -0.01 5.11 16 40 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.00 0.01 8.04 -2.39 -0.02 -0.01 16 Total: -1.00 -78.29 338.81 2.19 -76.11 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.65 Total: 18.87 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.75 Total: 1.10 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -6.22 Total: -127.34 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.06 Total: 53.19 kcal Total: -78.29 2.19 -76.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016263577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.807 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds