Wall clock time and date at job start Fri Apr 10 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48503 * 109.47133 * 239.99532 * 3 2 1 5 5 H 1.48501 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47198 * 119.99946 * 3 2 1 7 7 C 1.38808 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00408 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64564 * 359.97438 * 9 7 2 11 11 C 1.54327 * 107.27328 * 178.98419 * 10 9 7 12 12 C 1.55156 * 102.93829 * 337.80440 * 11 10 9 13 13 H 1.09002 * 111.00373 * 153.61577 * 12 11 10 14 14 N 1.46498 * 111.00677 * 277.42507 * 12 11 10 15 15 C 1.34775 * 120.00503 * 205.00425 * 14 12 11 16 16 O 1.21608 * 119.99703 * 359.97438 * 15 14 12 17 17 C 1.47434 * 120.00330 * 180.02562 * 15 14 12 18 18 C 1.38959 * 121.17102 * 359.71056 * 17 15 14 19 19 N 1.32195 * 121.31596 * 180.27066 * 18 17 15 20 20 C 1.31200 * 123.69795 * 0.02562 * 19 18 17 21 21 C 1.40381 * 120.91965 * 359.97438 * 20 19 18 22 22 C 1.40387 * 122.15094 * 180.02562 * 21 20 19 23 23 C 1.36226 * 119.48918 * 179.97438 * 22 21 20 24 24 C 1.39297 * 121.10577 * 0.02562 * 23 22 21 25 25 C 1.36435 * 120.94546 * 359.97438 * 24 23 22 26 26 C 1.39689 * 119.43627 * 0.02562 * 25 24 23 27 27 C 1.47422 * 125.65251 * 180.02562 * 9 7 2 28 28 H 0.96997 * 120.00171 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.88732 * 59.56337 * 10 9 7 30 30 H 1.09004 * 109.88328 * 298.40226 * 10 9 7 31 31 H 1.08997 * 110.71899 * 219.44477 * 11 10 9 32 32 H 1.08996 * 110.71802 * 96.16353 * 11 10 9 33 33 H 0.97008 * 119.99554 * 25.00654 * 14 12 11 34 34 H 1.07995 * 119.34126 * 0.28277 * 18 17 15 35 35 H 1.07998 * 119.53767 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.25444 * 0.02562 * 22 21 20 37 37 H 1.08005 * 119.45087 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.52475 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.27862 * 180.02562 * 25 24 23 40 40 H 1.08999 * 110.37083 * 85.24905 * 27 9 7 41 41 H 1.09004 * 110.36648 * 322.92079 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0442 -0.0256 12 6 0.8520 -4.6563 -0.6100 13 1 0.9836 -5.6857 -0.2764 14 7 0.8588 -4.5766 -2.0728 15 6 1.5906 -5.4504 -2.7920 16 8 2.2458 -6.3048 -2.2267 17 6 1.5978 -5.3698 -4.2642 18 6 0.8544 -4.4065 -4.9354 19 7 0.8546 -4.3350 -6.2554 20 6 1.5380 -5.1456 -7.0282 21 6 2.3321 -6.1656 -6.4807 22 6 3.0740 -7.0468 -7.2831 23 6 3.8273 -8.0171 -6.6942 24 6 3.8737 -8.1504 -5.3084 25 6 3.1653 -7.3112 -4.4988 26 6 2.3824 -6.3050 -5.0698 27 6 1.9336 -3.7311 0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5576 -2.0526 -0.8832 30 1 -0.5544 -2.0841 0.9022 31 1 -1.2983 -4.2518 -0.6756 32 1 -0.6315 -4.4176 0.9819 33 1 0.3364 -3.8948 -2.5237 34 1 0.2649 -3.7022 -4.3673 35 1 1.4894 -5.0261 -8.1004 36 1 3.0484 -6.9557 -8.3589 37 1 4.3982 -8.6945 -7.3120 38 1 4.4791 -8.9291 -4.8685 39 1 3.2094 -7.4240 -3.4256 40 1 2.1663 -4.0414 1.0202 41 1 2.8332 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016330682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:52 Heat of formation + Delta-G solvation = 53.018154 kcal Electronic energy + Delta-G solvation = -25041.925686 eV Core-core repulsion = 21501.532192 eV Total energy + Delta-G solvation = -3540.393494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.96978 -39.33082 -37.48685 -37.23970 -33.87187 -32.90145 -31.86009 -31.31011 -29.89592 -29.08172 -27.28725 -25.14463 -24.34794 -23.62367 -22.88017 -20.96552 -20.11002 -19.96003 -18.17852 -17.60902 -17.49652 -16.80311 -16.00891 -15.81990 -15.00246 -14.97003 -14.69739 -14.51767 -14.06334 -13.89411 -13.72622 -13.67557 -13.09333 -12.86970 -12.47075 -12.31307 -12.07820 -11.96079 -11.82771 -11.56047 -10.98503 -10.89829 -10.76817 -10.37086 -10.18035 -10.17419 -9.99354 -9.97576 -9.69702 -9.31288 -9.25324 -8.84360 -8.57864 -8.23074 -6.84654 -5.73662 -3.06485 -0.05774 0.73886 1.54416 2.75457 3.19458 3.31275 3.40296 3.44786 3.45630 3.97730 4.13878 4.37660 4.49068 4.53950 4.54268 4.69794 4.90717 5.02722 5.08077 5.25547 5.35981 5.40587 5.46183 5.51137 5.60169 5.73346 5.79598 5.80815 5.92241 6.14121 6.21380 6.30143 6.34848 6.39389 6.46097 6.48929 6.65131 6.70645 6.97796 7.50605 7.52988 7.72092 7.76390 7.78406 8.22718 8.38091 9.20205 9.80005 10.45323 11.38169 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.003541 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.419206 B = 7905.048015 C = 8472.697267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.093 0.907 14 N -0.694 5.694 15 C 0.567 3.433 16 O -0.543 6.543 17 C -0.168 4.168 18 C 0.124 3.876 19 N -0.494 5.494 20 C 0.171 3.829 21 C -0.122 4.122 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.102 4.102 25 C -0.108 4.108 26 C 0.012 3.988 27 C 0.125 3.875 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.167 0.833 40 H 0.029 0.971 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -15.656 -13.443 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.111 0.889 14 N -0.343 5.343 15 C 0.353 3.647 16 O -0.423 6.423 17 C -0.173 4.173 18 C -0.021 4.021 19 N -0.201 5.201 20 C -0.001 4.001 21 C -0.125 4.125 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.121 4.121 25 C -0.125 4.125 26 C 0.007 3.993 27 C -0.002 4.002 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.238 0.762 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.184 0.816 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.042 -15.294 -13.226 20.322 hybrid contribution 0.727 0.741 0.154 1.049 sum 2.769 -14.553 -13.072 19.757 Atomic orbital electron populations 1.69929 1.04812 1.25153 1.57200 1.24764 0.95719 0.97575 1.02257 0.86209 0.78477 0.83229 0.77913 1.21222 1.21579 1.21197 1.19005 0.90407 0.82388 1.43734 0.90615 1.44470 1.01451 0.99860 1.87289 1.21191 0.84574 0.87895 1.01347 1.23241 0.95604 1.00076 1.00371 1.22214 0.97674 0.99696 0.78207 0.88890 1.45779 1.47782 1.33129 1.07628 1.17742 0.79639 0.81546 0.85731 1.90597 1.43032 1.36680 1.72005 1.21976 1.01975 0.99245 0.94150 1.22859 0.94526 0.94661 0.90005 1.67126 1.20763 1.25905 1.06311 1.23288 0.88753 0.87994 1.00058 1.19019 1.01035 0.99142 0.93261 1.20932 0.96076 0.94511 0.99546 1.20974 0.99218 0.98513 0.95163 1.21175 0.98440 0.98967 0.93510 1.21844 0.94390 0.93013 1.03273 1.18926 0.94693 0.94169 0.91548 1.21944 0.94723 0.86372 0.97145 0.93713 0.93568 0.93658 0.91514 0.90768 0.76151 0.82189 0.81774 0.84862 0.85634 0.85454 0.81640 0.95302 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.31 55.49 0.57 -25.89 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -15.00 3.39 -170.06 -0.58 -15.58 16 10 C 0.17 4.00 5.36 -3.06 -0.02 3.98 16 11 C -0.15 -2.67 6.55 -24.90 -0.16 -2.83 16 12 C 0.13 2.23 3.43 -65.78 -0.23 2.00 16 13 H 0.09 1.56 7.54 -51.93 -0.39 1.16 16 14 N -0.69 -11.42 5.14 -52.79 -0.27 -11.69 16 15 C 0.57 9.43 7.77 -12.52 -0.10 9.33 16 16 O -0.54 -9.97 13.38 5.27 0.07 -9.90 16 17 C -0.17 -2.52 6.07 -102.66 -0.62 -3.15 16 18 C 0.12 1.73 10.71 -17.13 -0.18 1.55 16 19 N -0.49 -6.65 10.22 -12.58 -0.13 -6.78 16 20 C 0.17 1.87 11.00 -17.02 -0.19 1.68 16 21 C -0.12 -1.41 5.74 -106.89 -0.61 -2.03 16 22 C -0.09 -0.80 9.82 -39.50 -0.39 -1.18 16 23 C -0.12 -1.03 9.94 -39.91 -0.40 -1.43 16 24 C -0.10 -1.03 9.96 -39.84 -0.40 -1.43 16 25 C -0.11 -1.43 9.32 -39.69 -0.37 -1.80 16 26 C 0.01 0.17 5.91 -104.74 -0.62 -0.45 16 27 C 0.13 2.63 6.93 -2.53 -0.02 2.62 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 30 H 0.05 1.16 7.50 -51.93 -0.39 0.78 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 6.31 6.77 -40.82 -0.28 6.03 16 34 H 0.16 2.06 6.44 -52.49 -0.34 1.72 16 35 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.17 2.45 5.24 -52.49 -0.28 2.17 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -32.33 339.41 -9.77 -42.11 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.98 Total: 5.41 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -4.55 Total: 0.14 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.41 Total: -59.94 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.33 -9.77 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016330682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.126 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds