Wall clock time and date at job start Fri Apr 10 2020 22:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48503 * 109.47133 * 239.99532 * 3 2 1 5 5 H 1.48501 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47198 * 119.99946 * 3 2 1 7 7 C 1.38808 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00408 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64564 * 359.97438 * 9 7 2 11 11 C 1.54327 * 107.27328 * 178.98419 * 10 9 7 12 12 C 1.55156 * 102.93829 * 337.80440 * 11 10 9 13 13 H 1.09002 * 111.00373 * 153.61577 * 12 11 10 14 14 N 1.46498 * 111.00677 * 277.42507 * 12 11 10 15 15 C 1.34775 * 120.00503 * 205.00425 * 14 12 11 16 16 O 1.21608 * 119.99703 * 359.97438 * 15 14 12 17 17 C 1.47434 * 120.00330 * 180.02562 * 15 14 12 18 18 C 1.38959 * 121.17102 * 359.71056 * 17 15 14 19 19 N 1.32195 * 121.31596 * 180.27066 * 18 17 15 20 20 C 1.31200 * 123.69795 * 0.02562 * 19 18 17 21 21 C 1.40381 * 120.91965 * 359.97438 * 20 19 18 22 22 C 1.40387 * 122.15094 * 180.02562 * 21 20 19 23 23 C 1.36226 * 119.48918 * 179.97438 * 22 21 20 24 24 C 1.39297 * 121.10577 * 0.02562 * 23 22 21 25 25 C 1.36435 * 120.94546 * 359.97438 * 24 23 22 26 26 C 1.39689 * 119.43627 * 0.02562 * 25 24 23 27 27 C 1.47422 * 125.65251 * 180.02562 * 9 7 2 28 28 H 0.96997 * 120.00171 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.88732 * 59.56337 * 10 9 7 30 30 H 1.09004 * 109.88328 * 298.40226 * 10 9 7 31 31 H 1.08997 * 110.71899 * 219.44477 * 11 10 9 32 32 H 1.08996 * 110.71802 * 96.16353 * 11 10 9 33 33 H 0.97008 * 119.99554 * 25.00654 * 14 12 11 34 34 H 1.07995 * 119.34126 * 0.28277 * 18 17 15 35 35 H 1.07998 * 119.53767 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.25444 * 0.02562 * 22 21 20 37 37 H 1.08005 * 119.45087 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.52475 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.27862 * 180.02562 * 25 24 23 40 40 H 1.08999 * 110.37083 * 85.24905 * 27 9 7 41 41 H 1.09004 * 110.36648 * 322.92079 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0442 -0.0256 12 6 0.8520 -4.6563 -0.6100 13 1 0.9836 -5.6857 -0.2764 14 7 0.8588 -4.5766 -2.0728 15 6 1.5906 -5.4504 -2.7920 16 8 2.2458 -6.3048 -2.2267 17 6 1.5978 -5.3698 -4.2642 18 6 0.8544 -4.4065 -4.9354 19 7 0.8546 -4.3350 -6.2554 20 6 1.5380 -5.1456 -7.0282 21 6 2.3321 -6.1656 -6.4807 22 6 3.0740 -7.0468 -7.2831 23 6 3.8273 -8.0171 -6.6942 24 6 3.8737 -8.1504 -5.3084 25 6 3.1653 -7.3112 -4.4988 26 6 2.3824 -6.3050 -5.0698 27 6 1.9336 -3.7311 0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5576 -2.0526 -0.8832 30 1 -0.5544 -2.0841 0.9022 31 1 -1.2983 -4.2518 -0.6756 32 1 -0.6315 -4.4176 0.9819 33 1 0.3364 -3.8948 -2.5237 34 1 0.2649 -3.7022 -4.3673 35 1 1.4894 -5.0261 -8.1004 36 1 3.0484 -6.9557 -8.3589 37 1 4.3982 -8.6945 -7.3120 38 1 4.4791 -8.9291 -4.8685 39 1 3.2094 -7.4240 -3.4256 40 1 2.1663 -4.0414 1.0202 41 1 2.8332 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016330682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:51 Heat of formation + Delta-G solvation = 32.439752 kcal Electronic energy + Delta-G solvation = -25042.818032 eV Core-core repulsion = 21501.532192 eV Total energy + Delta-G solvation = -3541.285840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.94865 -40.60551 -38.83747 -38.35105 -35.50101 -34.06925 -33.42996 -32.16761 -31.24313 -30.52132 -28.93144 -26.63503 -25.82526 -24.51584 -23.82898 -22.26315 -21.84584 -21.43297 -19.22352 -18.92993 -18.49089 -18.37080 -17.33727 -16.81936 -16.63335 -16.21749 -15.96956 -15.71627 -15.63140 -15.12134 -15.00227 -14.73540 -14.29980 -14.02967 -13.84218 -13.74398 -13.54561 -13.17321 -12.92484 -12.90508 -12.80537 -12.42925 -12.33546 -12.10449 -12.03715 -11.82980 -11.61980 -11.11397 -11.05820 -10.73198 -10.41550 -10.18871 -10.07933 -9.14823 -8.87709 -7.86369 -5.20702 -0.97390 -0.13593 0.66715 1.44556 1.46687 1.53192 1.72418 2.04248 2.20066 2.48048 3.05593 3.20525 3.32461 3.49333 3.62719 3.65341 3.70516 3.77895 3.88248 4.00665 4.04696 4.26868 4.29733 4.32888 4.49429 4.60698 4.66297 4.70286 4.76263 4.86420 4.93729 5.01496 5.04419 5.15445 5.40914 5.42390 5.45977 5.53372 5.59346 5.66088 5.75292 5.91775 6.18559 6.43889 6.81274 7.09440 7.10512 7.75686 8.39722 9.23274 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.003541 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.419206 B = 7905.048015 C = 8472.697267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.974 3.026 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.134 4.134 12 C 0.141 3.859 13 H 0.108 0.892 14 N -0.695 5.695 15 C 0.567 3.433 16 O -0.566 6.566 17 C -0.200 4.200 18 C 0.126 3.874 19 N -0.523 5.523 20 C 0.189 3.811 21 C -0.139 4.139 22 C -0.074 4.074 23 C -0.123 4.123 24 C -0.087 4.087 25 C -0.148 4.148 26 C -0.008 4.008 27 C 0.123 3.877 28 H 0.248 0.752 29 H 0.020 0.980 30 H 0.011 0.989 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.405 0.595 34 H 0.160 0.840 35 H 0.210 0.790 36 H 0.178 0.822 37 H 0.165 0.835 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.035 0.965 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -17.236 -16.326 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.126 0.874 14 N -0.344 5.344 15 C 0.355 3.645 16 O -0.448 6.448 17 C -0.206 4.206 18 C -0.018 4.018 19 N -0.231 5.231 20 C 0.018 3.982 21 C -0.141 4.141 22 C -0.093 4.093 23 C -0.140 4.140 24 C -0.106 4.106 25 C -0.166 4.166 26 C -0.013 4.013 27 C -0.003 4.003 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.177 0.823 35 H 0.227 0.773 36 H 0.195 0.805 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.053 0.947 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.876 -16.899 -16.112 23.526 hybrid contribution 0.583 1.120 0.922 1.563 sum 3.459 -15.779 -15.191 22.174 Atomic orbital electron populations 1.70129 1.05909 1.25360 1.57934 1.25515 0.96614 1.00505 1.02437 0.85233 0.77269 0.79292 0.77995 1.20721 1.21636 1.20601 1.19305 0.90675 0.83910 1.43521 0.91001 1.44694 1.02474 1.00488 1.87110 1.20975 0.83370 0.91424 0.98415 1.23098 0.96295 0.95579 1.02254 1.22038 0.96175 0.99424 0.78840 0.87393 1.45762 1.48101 1.33416 1.07164 1.18072 0.78826 0.80884 0.86694 1.90584 1.43894 1.37562 1.72735 1.21849 1.04447 1.01239 0.93028 1.22888 0.94034 0.94182 0.90704 1.67208 1.22534 1.27428 1.05881 1.24065 0.86263 0.86142 1.01741 1.19333 1.02077 1.00315 0.92390 1.21460 0.93766 0.92657 1.01424 1.21421 0.99153 0.98969 0.94491 1.21531 0.96658 0.97882 0.94537 1.21695 0.97136 0.95138 1.02590 1.19173 0.94926 0.94250 0.92985 1.22060 0.95186 0.85648 0.97445 0.94271 0.96166 0.97069 0.88857 0.88765 0.75854 0.82288 0.77316 0.80496 0.81755 0.83377 0.84263 0.94691 0.95597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 10.31 21.65 0.22 -55.57 16 2 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 3 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.25 -13.96 10.28 84.03 0.86 -13.10 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -31.85 3.39 -691.96 -2.35 -34.20 16 10 C 0.18 8.64 5.36 86.73 0.47 9.10 16 11 C -0.13 -4.56 6.55 31.78 0.21 -4.35 16 12 C 0.14 4.96 3.43 46.39 0.16 5.11 16 13 H 0.11 3.55 7.54 -2.39 -0.02 3.53 16 14 N -0.70 -23.58 5.14 -439.20 -2.26 -25.84 16 15 C 0.57 19.72 7.77 86.67 0.67 20.39 16 16 O -0.57 -21.81 13.38 -4.06 -0.05 -21.86 16 17 C -0.20 -6.23 6.07 -18.59 -0.11 -6.35 16 18 C 0.13 3.61 10.71 84.81 0.91 4.52 16 19 N -0.52 -13.60 10.22 -193.72 -1.98 -15.58 16 20 C 0.19 3.62 11.00 85.31 0.94 4.56 16 21 C -0.14 -2.88 5.74 -21.34 -0.12 -3.00 16 22 C -0.07 -0.96 9.82 22.32 0.22 -0.74 16 23 C -0.12 -1.58 9.94 22.06 0.22 -1.36 16 24 C -0.09 -1.60 9.96 22.10 0.22 -1.38 16 25 C -0.15 -3.96 9.32 22.20 0.21 -3.76 16 26 C -0.01 -0.23 5.91 -19.94 -0.12 -0.35 16 27 C 0.12 5.30 6.93 86.86 0.60 5.91 16 28 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.02 1.04 7.38 -2.39 -0.02 1.03 16 30 H 0.01 0.59 7.50 -2.39 -0.02 0.58 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.41 13.22 6.77 -92.70 -0.63 12.60 16 34 H 0.16 4.33 6.44 -2.91 -0.02 4.32 16 35 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.14 4.42 5.24 -2.91 -0.02 4.40 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -74.17 339.41 1.85 -72.33 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.44 Total: 20.04 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.80 Total: 12.44 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -6.36 Total: -131.19 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -74.17 1.85 -72.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016330682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.767 kcal (2) G-P(sol) polarization free energy of solvation -74.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds