Wall clock time and date at job start Fri Apr 10 2020 22:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48499 * 109.46857 * 274.98959 * 3 2 1 5 5 H 1.48505 * 109.46933 * 34.98506 * 3 2 1 6 6 H 1.48493 * 109.47251 * 154.98563 * 3 2 1 7 7 C 1.38814 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00187 * 187.05993 * 7 2 1 9 9 N 1.36941 * 119.99750 * 7.06432 * 7 2 1 10 10 C 1.47023 * 125.64933 * 354.87265 * 9 7 2 11 11 C 1.54330 * 107.26831 * 178.92142 * 10 9 7 12 12 C 1.55162 * 102.94236 * 337.80564 * 11 10 9 13 13 H 1.09000 * 111.00277 * 277.39331 * 12 11 10 14 14 N 1.46498 * 111.00222 * 153.57890 * 12 11 10 15 15 C 1.34776 * 120.00128 * 154.99596 * 14 12 11 16 16 O 1.21602 * 119.99515 * 0.02562 * 15 14 12 17 17 C 1.47438 * 120.00383 * 179.72091 * 15 14 12 18 18 C 1.38952 * 121.16922 * 0.28517 * 17 15 14 19 19 N 1.32202 * 121.31966 * 179.97438 * 18 17 15 20 20 C 1.31189 * 123.69458 * 0.02562 * 19 18 17 21 21 C 1.40392 * 120.91631 * 0.02562 * 20 19 18 22 22 C 1.40393 * 122.14453 * 180.02562 * 21 20 19 23 23 C 1.36238 * 119.48506 * 179.10059 * 22 21 20 24 24 C 1.39299 * 121.09799 * 0.85079 * 23 22 21 25 25 C 1.36428 * 120.95150 * 359.41976 * 24 23 22 26 26 C 1.39694 * 119.43711 * 359.97438 * 25 24 23 27 27 C 1.47430 * 125.64420 * 174.84890 * 9 7 2 28 28 H 0.96998 * 120.00017 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.88379 * 59.50275 * 10 9 7 30 30 H 1.08997 * 109.88075 * 298.33362 * 10 9 7 31 31 H 1.09001 * 110.71732 * 219.44278 * 11 10 9 32 32 H 1.08998 * 110.87333 * 96.24070 * 11 10 9 33 33 H 0.97003 * 119.99709 * 334.99726 * 14 12 11 34 34 H 1.08000 * 119.34184 * 359.97438 * 18 17 15 35 35 H 1.08005 * 119.54578 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.25553 * 359.97438 * 22 21 20 37 37 H 1.07996 * 119.44781 * 180.26811 * 23 22 21 38 38 H 1.08007 * 119.52346 * 179.39406 * 24 23 22 39 39 H 1.07998 * 120.28688 * 179.97438 * 25 24 23 40 40 H 1.09003 * 110.36743 * 85.31235 * 27 9 7 41 41 H 1.08996 * 110.36789 * 322.98772 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3333 -2.3836 -0.1448 10 6 -0.1282 -2.5322 -0.2032 11 6 -0.4286 -4.0332 -0.3994 12 6 0.8920 -4.5754 -1.0073 13 1 0.9278 -4.4007 -2.0826 14 7 1.0649 -5.9980 -0.7031 15 6 1.8215 -6.7718 -1.5064 16 8 2.3610 -6.2889 -2.4834 17 6 2.0006 -8.2021 -1.1969 18 6 1.3958 -8.7790 -0.0869 19 7 1.5539 -10.0613 0.1931 20 6 2.2769 -10.8809 -0.5325 21 6 2.9443 -10.4290 -1.6820 22 6 3.7241 -11.2835 -2.4774 23 6 4.3335 -10.7915 -3.5921 24 6 4.2102 -9.4500 -3.9467 25 6 3.4648 -8.5908 -3.1935 26 6 2.8163 -9.0651 -2.0507 27 6 1.9495 -3.7172 -0.2691 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5256 -1.9618 -1.0427 30 1 -0.5737 -2.1838 0.7285 31 1 -1.2582 -4.1731 -1.0925 32 1 -0.6401 -4.5150 0.5552 33 1 0.6348 -6.3830 0.0764 34 1 0.7843 -8.1675 0.5601 35 1 2.3598 -11.9177 -0.2416 36 1 3.8286 -12.3261 -2.2155 37 1 4.9297 -11.4503 -4.2059 38 1 4.7122 -9.0848 -4.8305 39 1 3.3769 -7.5527 -3.4781 40 1 2.1548 -4.1337 0.7171 41 1 2.8666 -3.6583 -0.8552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016330684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:56 Heat of formation + Delta-G solvation = 53.606579 kcal Electronic energy + Delta-G solvation = -24574.847345 eV Core-core repulsion = 21034.479368 eV Total energy + Delta-G solvation = -3540.367978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.09242 -39.39139 -37.60555 -37.24970 -34.17696 -33.01262 -31.92992 -31.42466 -30.02961 -29.08757 -27.18654 -25.24966 -24.30235 -23.74196 -22.90276 -20.98106 -20.41423 -20.02028 -18.29440 -17.70800 -17.62105 -16.85904 -16.06970 -15.90278 -15.11949 -15.07860 -14.74830 -14.53683 -14.24358 -13.99312 -13.93824 -13.57790 -13.04189 -12.81918 -12.45424 -12.43347 -12.26500 -12.16587 -11.83105 -11.64476 -11.05120 -10.94915 -10.77941 -10.39519 -10.29588 -10.12600 -10.06980 -9.93272 -9.75146 -9.42688 -9.35902 -8.87419 -8.58957 -8.35089 -6.85453 -5.73955 -3.06310 -0.18670 0.62022 1.44011 2.62544 3.08595 3.13842 3.41274 3.46693 3.48287 3.85312 3.97021 4.24882 4.40359 4.42522 4.51344 4.59753 4.77899 4.90905 4.98442 5.20043 5.24123 5.36266 5.42660 5.49371 5.56657 5.69603 5.70832 5.76417 5.83585 6.08932 6.13482 6.22953 6.29202 6.31296 6.39182 6.51579 6.62999 6.67147 6.91900 7.49347 7.56499 7.57757 7.60569 7.80056 8.21654 8.26620 9.20158 9.80223 10.45241 11.38387 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002805 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.852626 B = 9981.094675 C =10644.824389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.178 3.822 11 C -0.150 4.150 12 C 0.127 3.873 13 H 0.100 0.900 14 N -0.707 5.707 15 C 0.564 3.436 16 O -0.531 6.531 17 C -0.167 4.167 18 C 0.119 3.881 19 N -0.496 5.496 20 C 0.172 3.828 21 C -0.121 4.121 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.099 4.099 25 C -0.108 4.108 26 C 0.011 3.989 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.167 0.833 40 H 0.020 0.980 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -24.666 -3.910 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.189 4.189 12 C 0.022 3.978 13 H 0.118 0.882 14 N -0.357 5.357 15 C 0.351 3.649 16 O -0.410 6.410 17 C -0.172 4.172 18 C -0.026 4.026 19 N -0.204 5.204 20 C 0.001 3.999 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.119 4.119 25 C -0.126 4.126 26 C 0.006 3.994 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.184 0.816 40 H 0.037 0.963 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.562 -24.213 -3.810 24.769 hybrid contribution 0.624 0.974 -0.267 1.187 sum 4.186 -23.239 -4.077 23.962 Atomic orbital electron populations 1.69957 1.04925 1.25136 1.56833 1.24824 0.95730 0.97690 1.02069 0.86100 0.78695 0.83464 0.77544 1.21552 1.21755 1.20603 1.19072 0.91206 0.82400 1.42972 0.90346 1.44390 1.01619 1.00862 1.86168 1.21162 0.84631 0.87621 1.01255 1.23197 0.95633 1.00320 0.99701 1.22395 0.97114 0.77214 1.01091 0.88202 1.45951 1.50499 1.10536 1.28719 1.17801 0.79113 0.84916 0.83101 1.90647 1.47848 1.74461 1.28026 1.21994 1.02341 0.94580 0.98295 1.22773 0.95294 0.90983 0.93530 1.67106 1.17274 1.04618 1.31366 1.23280 0.88844 0.99316 0.88490 1.19017 1.01245 0.93830 0.98271 1.20946 0.96380 0.99269 0.94566 1.21006 0.99663 0.95892 0.97067 1.21208 0.97665 0.93322 0.99666 1.21867 0.94806 1.02932 0.92954 1.18934 0.94621 0.91576 0.94295 1.21825 0.94918 0.86698 0.96364 0.93698 0.93023 0.93674 0.91497 0.91969 0.76810 0.82402 0.81726 0.84797 0.85526 0.85310 0.81572 0.96272 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.00 10.36 55.49 0.57 -26.42 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.28 29.56 -169.99 -5.02 17.25 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 10 C 0.18 4.24 5.38 -3.06 -0.02 4.23 16 11 C -0.15 -2.64 6.60 -24.89 -0.16 -2.80 16 12 C 0.13 2.26 3.42 -65.78 -0.23 2.03 16 13 H 0.10 1.96 7.54 -51.93 -0.39 1.57 16 14 N -0.71 -10.08 5.15 -52.80 -0.27 -10.36 16 15 C 0.56 8.59 7.77 -12.51 -0.10 8.49 16 16 O -0.53 -9.65 13.38 5.28 0.07 -9.58 16 17 C -0.17 -2.17 6.07 -102.67 -0.62 -2.80 16 18 C 0.12 1.33 10.71 -17.13 -0.18 1.14 16 19 N -0.50 -5.48 10.22 -12.58 -0.13 -5.60 16 20 C 0.17 1.57 11.00 -17.02 -0.19 1.38 16 21 C -0.12 -1.23 5.74 -106.89 -0.61 -1.84 16 22 C -0.09 -0.70 9.82 -39.49 -0.39 -1.09 16 23 C -0.12 -0.91 9.94 -39.91 -0.40 -1.31 16 24 C -0.10 -0.95 9.96 -39.84 -0.40 -1.34 16 25 C -0.11 -1.35 9.32 -39.69 -0.37 -1.72 16 26 C 0.01 0.14 5.90 -104.75 -0.62 -0.48 16 27 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 30 H 0.05 1.17 7.61 -51.93 -0.40 0.78 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 33 H 0.40 4.46 6.67 -40.82 -0.27 4.19 16 34 H 0.16 1.39 6.44 -52.49 -0.34 1.05 16 35 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.17 2.39 5.24 -52.49 -0.28 2.12 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -33.51 339.30 -9.76 -43.27 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.97 Total: 2.70 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -4.55 Total: -0.25 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.40 Total: -58.50 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.51 -9.76 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016330684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.876 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds