Wall clock time and date at job start Fri Apr 10 2020 22:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48499 * 109.46857 * 274.98959 * 3 2 1 5 5 H 1.48505 * 109.46933 * 34.98506 * 3 2 1 6 6 H 1.48493 * 109.47251 * 154.98563 * 3 2 1 7 7 C 1.38814 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00187 * 187.05993 * 7 2 1 9 9 N 1.36941 * 119.99750 * 7.06432 * 7 2 1 10 10 C 1.47023 * 125.64933 * 354.87265 * 9 7 2 11 11 C 1.54330 * 107.26831 * 178.92142 * 10 9 7 12 12 C 1.55162 * 102.94236 * 337.80564 * 11 10 9 13 13 H 1.09000 * 111.00277 * 277.39331 * 12 11 10 14 14 N 1.46498 * 111.00222 * 153.57890 * 12 11 10 15 15 C 1.34776 * 120.00128 * 154.99596 * 14 12 11 16 16 O 1.21602 * 119.99515 * 0.02562 * 15 14 12 17 17 C 1.47438 * 120.00383 * 179.72091 * 15 14 12 18 18 C 1.38952 * 121.16922 * 0.28517 * 17 15 14 19 19 N 1.32202 * 121.31966 * 179.97438 * 18 17 15 20 20 C 1.31189 * 123.69458 * 0.02562 * 19 18 17 21 21 C 1.40392 * 120.91631 * 0.02562 * 20 19 18 22 22 C 1.40393 * 122.14453 * 180.02562 * 21 20 19 23 23 C 1.36238 * 119.48506 * 179.10059 * 22 21 20 24 24 C 1.39299 * 121.09799 * 0.85079 * 23 22 21 25 25 C 1.36428 * 120.95150 * 359.41976 * 24 23 22 26 26 C 1.39694 * 119.43711 * 359.97438 * 25 24 23 27 27 C 1.47430 * 125.64420 * 174.84890 * 9 7 2 28 28 H 0.96998 * 120.00017 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.88379 * 59.50275 * 10 9 7 30 30 H 1.08997 * 109.88075 * 298.33362 * 10 9 7 31 31 H 1.09001 * 110.71732 * 219.44278 * 11 10 9 32 32 H 1.08998 * 110.87333 * 96.24070 * 11 10 9 33 33 H 0.97003 * 119.99709 * 334.99726 * 14 12 11 34 34 H 1.08000 * 119.34184 * 359.97438 * 18 17 15 35 35 H 1.08005 * 119.54578 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.25553 * 359.97438 * 22 21 20 37 37 H 1.07996 * 119.44781 * 180.26811 * 23 22 21 38 38 H 1.08007 * 119.52346 * 179.39406 * 24 23 22 39 39 H 1.07998 * 120.28688 * 179.97438 * 25 24 23 40 40 H 1.09003 * 110.36743 * 85.31235 * 27 9 7 41 41 H 1.08996 * 110.36789 * 322.98772 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3333 -2.3836 -0.1448 10 6 -0.1282 -2.5322 -0.2032 11 6 -0.4286 -4.0332 -0.3994 12 6 0.8920 -4.5754 -1.0073 13 1 0.9278 -4.4007 -2.0826 14 7 1.0649 -5.9980 -0.7031 15 6 1.8215 -6.7718 -1.5064 16 8 2.3610 -6.2889 -2.4834 17 6 2.0006 -8.2021 -1.1969 18 6 1.3958 -8.7790 -0.0869 19 7 1.5539 -10.0613 0.1931 20 6 2.2769 -10.8809 -0.5325 21 6 2.9443 -10.4290 -1.6820 22 6 3.7241 -11.2835 -2.4774 23 6 4.3335 -10.7915 -3.5921 24 6 4.2102 -9.4500 -3.9467 25 6 3.4648 -8.5908 -3.1935 26 6 2.8163 -9.0651 -2.0507 27 6 1.9495 -3.7172 -0.2691 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5256 -1.9618 -1.0427 30 1 -0.5737 -2.1838 0.7285 31 1 -1.2582 -4.1731 -1.0925 32 1 -0.6401 -4.5150 0.5552 33 1 0.6348 -6.3830 0.0764 34 1 0.7843 -8.1675 0.5601 35 1 2.3598 -11.9177 -0.2416 36 1 3.8286 -12.3261 -2.2155 37 1 4.9297 -11.4503 -4.2059 38 1 4.7122 -9.0848 -4.8305 39 1 3.3769 -7.5527 -3.4781 40 1 2.1548 -4.1337 0.7171 41 1 2.8666 -3.6583 -0.8552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016330684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:55 Heat of formation + Delta-G solvation = 31.516464 kcal Electronic energy + Delta-G solvation = -24575.805245 eV Core-core repulsion = 21034.479368 eV Total energy + Delta-G solvation = -3541.325877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94750 -40.58228 -38.88498 -38.34473 -35.73060 -34.11421 -33.51354 -32.16658 -31.26923 -30.56550 -28.81979 -26.70377 -25.70445 -24.50279 -23.78551 -22.33173 -21.91491 -21.66012 -19.23067 -19.00039 -18.48945 -18.34190 -17.34988 -16.80982 -16.69995 -16.23439 -15.95503 -15.89137 -15.64070 -15.02524 -14.85865 -14.70386 -14.31294 -14.14161 -13.97613 -13.75023 -13.63964 -13.16669 -12.98355 -12.90953 -12.81400 -12.48734 -12.41550 -12.11672 -12.03954 -11.84966 -11.61735 -11.10948 -11.08246 -10.72368 -10.41971 -10.23054 -10.08082 -9.14059 -8.94583 -7.90290 -5.25250 -0.97237 -0.12891 0.66104 1.43862 1.46504 1.55080 1.72422 1.93623 2.18888 2.47845 3.06073 3.21752 3.28851 3.50099 3.59265 3.64803 3.70678 3.80588 3.88441 4.01015 4.02059 4.16709 4.28129 4.32368 4.50623 4.54178 4.63271 4.68198 4.77395 4.83556 4.93075 4.99801 5.03835 5.16747 5.38849 5.41010 5.44449 5.52699 5.58259 5.61326 5.70939 5.90840 6.15779 6.43211 6.82186 7.06158 7.11522 7.71460 8.35280 9.20393 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002805 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.852626 B = 9981.094675 C =10644.824389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.625 5.625 10 C 0.183 3.817 11 C -0.128 4.128 12 C 0.147 3.853 13 H 0.079 0.921 14 N -0.695 5.695 15 C 0.564 3.436 16 O -0.570 6.570 17 C -0.202 4.202 18 C 0.133 3.867 19 N -0.519 5.519 20 C 0.193 3.807 21 C -0.138 4.138 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.152 4.152 26 C -0.009 4.009 27 C 0.129 3.871 28 H 0.250 0.750 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.414 0.586 34 H 0.178 0.822 35 H 0.211 0.789 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.031 0.969 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -28.510 -3.377 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.058 3.942 11 C -0.167 4.167 12 C 0.041 3.959 13 H 0.097 0.903 14 N -0.346 5.346 15 C 0.353 3.647 16 O -0.451 6.451 17 C -0.207 4.207 18 C -0.011 4.011 19 N -0.227 5.227 20 C 0.022 3.978 21 C -0.141 4.141 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.108 4.108 25 C -0.170 4.170 26 C -0.014 4.014 27 C 0.002 3.998 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.194 0.806 35 H 0.227 0.773 36 H 0.196 0.804 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.049 0.951 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.250 -28.107 -3.257 28.613 hybrid contribution 0.510 1.993 -0.473 2.111 sum 4.760 -26.115 -3.730 26.806 Atomic orbital electron populations 1.70159 1.06178 1.25535 1.57591 1.25657 0.96689 1.00909 1.02143 0.85069 0.77860 0.79125 0.77338 1.21438 1.21604 1.19402 1.19410 0.91552 0.83894 1.42924 0.90499 1.44671 1.02729 1.01737 1.86109 1.20955 0.83483 0.91408 0.98325 1.23014 0.95940 0.95792 1.01935 1.21852 0.95861 0.78865 0.99354 0.90304 1.45660 1.50759 1.08757 1.29452 1.18237 0.78111 0.86042 0.82318 1.90645 1.49314 1.75453 1.29693 1.21764 1.05409 0.93130 1.00383 1.23063 0.94017 0.91508 0.92510 1.67254 1.18759 1.04474 1.32188 1.24052 0.86086 1.00771 0.86892 1.19325 1.02393 0.92960 0.99381 1.21484 0.93736 1.00804 0.93144 1.21399 0.99969 0.95158 0.97721 1.21507 0.95910 0.94198 0.99222 1.21678 0.98053 1.02275 0.94953 1.19186 0.94801 0.93088 0.94345 1.21921 0.95146 0.85773 0.96961 0.94119 0.96562 0.96471 0.89175 0.88838 0.74720 0.80551 0.77294 0.80363 0.81985 0.83926 0.84793 0.95091 0.95610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.38 10.36 21.65 0.22 -57.16 16 2 C -0.06 -3.52 5.48 84.86 0.46 -3.06 16 3 Si 0.98 46.82 29.56 68.60 2.03 48.84 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -14.54 10.27 84.03 0.86 -13.68 16 8 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 9 N -0.63 -33.40 3.39 -691.97 -2.35 -35.75 16 10 C 0.18 9.03 5.38 86.73 0.47 9.50 16 11 C -0.13 -4.45 6.60 31.79 0.21 -4.24 16 12 C 0.15 5.33 3.42 46.39 0.16 5.49 16 13 H 0.08 3.24 7.54 -2.39 -0.02 3.22 16 14 N -0.69 -19.73 5.15 -439.20 -2.26 -21.99 16 15 C 0.56 17.83 7.77 86.67 0.67 18.50 16 16 O -0.57 -22.30 13.38 -4.04 -0.05 -22.35 16 17 C -0.20 -5.28 6.07 -18.60 -0.11 -5.39 16 18 C 0.13 2.78 10.71 84.81 0.91 3.69 16 19 N -0.52 -10.02 10.22 -193.72 -1.98 -12.00 16 20 C 0.19 2.77 11.00 85.31 0.94 3.71 16 21 C -0.14 -2.41 5.74 -21.33 -0.12 -2.54 16 22 C -0.07 -0.78 9.82 22.33 0.22 -0.57 16 23 C -0.12 -1.49 9.94 22.06 0.22 -1.27 16 24 C -0.09 -1.62 9.96 22.10 0.22 -1.40 16 25 C -0.15 -3.97 9.32 22.20 0.21 -3.76 16 26 C -0.01 -0.23 5.90 -19.94 -0.12 -0.35 16 27 C 0.13 5.67 6.93 86.85 0.60 6.27 16 28 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.02 0.90 7.30 -2.39 -0.02 0.88 16 30 H 0.02 0.93 7.61 -2.39 -0.02 0.91 16 31 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.09 2.69 8.00 -2.39 -0.02 2.67 16 33 H 0.41 8.69 6.67 -92.71 -0.62 8.07 16 34 H 0.18 2.74 6.44 -2.91 -0.02 2.73 16 35 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 37 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.13 4.33 5.24 -2.91 -0.02 4.31 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -78.58 339.30 1.85 -76.73 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.45 Total: 12.76 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.80 Total: 10.91 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.37 Total: -126.90 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.58 1.85 -76.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016330684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.244 kcal (2) G-P(sol) polarization free energy of solvation -78.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds