Wall clock time and date at job start Fri Apr 10 2020 22:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47333 * 270.00239 * 3 2 1 5 5 H 1.48494 * 109.47174 * 30.00457 * 3 2 1 6 6 H 1.48506 * 109.46958 * 150.00027 * 3 2 1 7 7 C 1.38813 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99957 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00382 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.91478 * 31.09863 * 10 9 7 12 12 C 1.55158 * 111.00843 * 154.99684 * 10 9 7 13 13 C 1.54329 * 102.94436 * 153.57784 * 12 10 9 14 14 N 1.47020 * 107.26914 * 337.80837 * 13 12 10 15 15 C 1.34780 * 125.64901 * 178.97306 * 14 13 12 16 16 O 1.21598 * 119.99990 * 175.13982 * 15 14 13 17 17 C 1.47436 * 119.99906 * 355.14193 * 15 14 13 18 18 C 1.38747 * 120.32774 * 46.99504 * 17 15 14 19 19 C 1.38875 * 120.71951 * 179.97438 * 18 17 15 20 20 C 1.36353 * 121.06031 * 0.02562 * 19 18 17 21 21 C 1.40440 * 120.08430 * 0.02562 * 20 19 18 22 22 C 1.40810 * 121.26748 * 180.02562 * 21 20 19 23 23 C 1.36628 * 118.15305 * 179.97438 * 22 21 20 24 24 C 1.39242 * 119.91118 * 359.97438 * 23 22 21 25 25 N 1.31224 * 121.69266 * 359.97438 * 24 23 22 26 26 C 1.33353 * 121.35636 * 359.74721 * 25 24 23 27 27 C 1.47429 * 108.70478 * 358.94310 * 14 13 12 28 28 H 0.97000 * 119.99641 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99878 * 359.97438 * 9 7 2 30 30 H 1.09003 * 110.71818 * 35.21924 * 12 10 9 31 31 H 1.08996 * 110.72033 * 271.94488 * 12 10 9 32 32 H 1.08998 * 109.88072 * 97.22814 * 13 12 10 33 33 H 1.08998 * 109.88186 * 218.23785 * 13 12 10 34 34 H 1.07997 * 119.64337 * 359.97438 * 18 17 15 35 35 H 1.08001 * 119.46807 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.95953 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.92286 * 0.02562 * 22 21 20 38 38 H 1.07998 * 120.04647 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.15270 * 180.02562 * 24 23 22 40 40 H 1.09006 * 110.36414 * 142.96844 * 27 14 13 41 41 H 1.09003 * 110.36270 * 265.17590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 3.0079 -3.5582 0.5235 12 6 1.1995 -4.7951 0.6107 13 6 1.7703 -6.0600 -0.0646 14 7 2.4294 -5.6318 -1.3070 15 6 3.0700 -6.4396 -2.1752 16 8 3.5039 -5.9893 -3.2180 17 6 3.2444 -7.8694 -1.8604 18 6 2.1737 -8.6204 -1.3970 19 6 2.3287 -9.9679 -1.0986 20 6 3.5333 -10.5882 -1.2516 21 6 4.6436 -9.8650 -1.7170 22 6 5.8988 -10.4807 -1.8847 23 6 6.9354 -9.7171 -2.3419 24 6 6.7319 -8.3697 -2.6279 25 7 5.5597 -7.8010 -2.4708 26 6 4.5063 -8.4919 -2.0334 27 6 2.2731 -4.1724 -1.4464 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 0.1476 -4.6639 0.3571 31 1 1.3340 -4.8408 1.6914 32 1 2.4957 -6.5368 0.5946 33 1 0.9625 -6.7556 -0.2915 34 1 1.2093 -8.1522 -1.2670 35 1 1.4816 -10.5334 -0.7396 36 1 3.6337 -11.6371 -1.0145 37 1 6.0380 -11.5276 -1.6589 38 1 7.9114 -10.1580 -2.4813 39 1 7.5598 -7.7776 -2.9890 40 1 3.1740 -3.7337 -1.8757 41 1 1.4070 -3.9413 -2.0665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019101433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:01 Heat of formation + Delta-G solvation = 46.903640 kcal Electronic energy + Delta-G solvation = -24737.616920 eV Core-core repulsion = 21196.958281 eV Total energy + Delta-G solvation = -3540.658639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17619 -39.49173 -37.30175 -36.98656 -34.12775 -33.65223 -31.64272 -30.81913 -30.37192 -29.55682 -27.47549 -25.04503 -24.18286 -23.76713 -23.08040 -22.10257 -20.15964 -19.35170 -18.63325 -17.59400 -17.19166 -16.98355 -16.30845 -15.82103 -15.25873 -14.96714 -14.62844 -14.46465 -14.19967 -13.86230 -13.58826 -13.44015 -13.21486 -13.09578 -12.96779 -12.40656 -12.23275 -12.15639 -11.94251 -11.57657 -11.43835 -11.06085 -10.84907 -10.75643 -10.70513 -10.26266 -10.02896 -9.88388 -9.74656 -9.39880 -9.06716 -8.98973 -8.52777 -8.24261 -7.06034 -5.82127 -3.12550 -0.02202 0.55509 1.58026 2.56965 3.00846 3.28679 3.43701 3.49254 3.50250 3.90871 4.04483 4.26958 4.46367 4.49216 4.56629 4.60650 4.70909 4.81509 4.96786 5.00459 5.09506 5.24430 5.31813 5.44011 5.54519 5.59542 5.65044 5.70334 5.78618 5.81440 5.95209 5.98371 6.04649 6.15745 6.20360 6.29570 6.41288 6.51216 6.59207 6.67980 6.91498 7.68244 7.75797 7.85187 8.35445 8.45875 9.47666 10.00676 10.35835 11.39995 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.003007 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.194720 B = 9308.868254 C =10098.706027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.142 4.142 13 C 0.102 3.898 14 N -0.611 5.611 15 C 0.574 3.426 16 O -0.516 6.516 17 C -0.091 4.091 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.082 4.082 21 C -0.108 4.108 22 C -0.059 4.059 23 C -0.175 4.175 24 C 0.134 3.866 25 N -0.453 5.453 26 C 0.159 3.841 27 C 0.084 3.916 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -26.360 0.080 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.350 5.350 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.180 4.180 13 C -0.021 4.021 14 N -0.345 5.345 15 C 0.361 3.639 16 O -0.392 6.392 17 C -0.094 4.094 18 C -0.093 4.093 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.085 4.085 23 C -0.195 4.195 24 C -0.039 4.039 25 N -0.160 5.160 26 C 0.037 3.963 27 C -0.041 4.041 28 H 0.066 0.934 29 H 0.221 0.779 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.090 0.910 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.011 -25.046 -0.682 26.305 hybrid contribution 0.258 -0.087 0.116 0.296 sum 8.269 -25.133 -0.567 26.465 Atomic orbital electron populations 1.69660 1.05160 1.25898 1.57121 1.24765 0.95537 0.97840 1.02408 0.86165 0.78682 0.83550 0.77647 1.21548 1.21729 1.20629 1.19279 0.91161 0.83902 1.43479 0.90914 1.42300 1.05799 0.99397 1.87522 1.21313 0.95218 0.86040 0.91458 0.91442 1.22957 1.00830 0.94003 1.00255 1.22143 0.96212 0.97925 0.85859 1.48445 1.54098 1.09475 1.22528 1.17511 0.78185 0.84707 0.83504 1.90804 1.48616 1.75623 1.24148 1.19890 0.92832 0.94685 1.02040 1.21573 0.98556 0.94189 0.94952 1.20849 0.97986 0.94462 1.00428 1.21108 0.91925 0.99719 0.97305 1.18798 0.95398 0.94330 1.02504 1.21458 0.91437 1.00094 0.95475 1.21941 1.00426 0.95719 1.01451 1.23118 0.94686 0.92535 0.93568 1.68134 0.98934 1.38056 1.10842 1.18562 0.92358 0.89466 0.95949 1.23414 1.01899 0.76875 1.01868 0.93367 0.77860 0.90403 0.90201 0.91848 0.91831 0.84233 0.84767 0.84932 0.84253 0.84390 0.82230 0.91050 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.80 9.96 -15.06 -0.15 -6.95 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.71 -17.42 5.24 -51.36 -0.27 -17.68 16 10 C 0.17 3.39 3.71 -65.79 -0.24 3.15 16 11 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 12 C -0.14 -2.14 6.60 -24.89 -0.16 -2.31 16 13 C 0.10 1.36 5.63 -3.06 -0.02 1.35 16 14 N -0.61 -10.45 3.33 -171.78 -0.57 -11.02 16 15 C 0.57 10.50 7.15 -12.51 -0.09 10.41 16 16 O -0.52 -11.50 16.76 5.28 0.09 -11.41 16 17 C -0.09 -1.34 5.46 -104.62 -0.57 -1.91 16 18 C -0.07 -0.78 8.50 -39.16 -0.33 -1.12 16 19 C -0.12 -0.97 9.93 -40.03 -0.40 -1.37 16 20 C -0.08 -0.66 9.75 -39.43 -0.38 -1.05 16 21 C -0.11 -1.16 5.74 -106.82 -0.61 -1.77 16 22 C -0.06 -0.47 9.90 -39.19 -0.39 -0.86 16 23 C -0.18 -1.42 10.03 -39.79 -0.40 -1.82 16 24 C 0.13 1.48 11.15 -17.44 -0.19 1.29 16 25 N -0.45 -7.05 9.34 -10.76 -0.10 -7.15 16 26 C 0.16 2.31 6.59 -84.58 -0.56 1.75 16 27 C 0.08 1.67 6.58 -2.53 -0.02 1.65 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.39 9.94 7.76 -40.82 -0.32 9.63 16 30 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.69 5.97 -51.93 -0.31 0.38 16 34 H 0.14 1.30 5.86 -52.49 -0.31 1.00 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -35.49 345.40 -9.68 -45.17 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.12 Total: 6.45 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.61 Total: 0.09 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.22 Total: -62.86 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.49 -9.68 -45.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019101433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.074 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds