Wall clock time and date at job start Fri Apr 10 2020 22:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47333 * 270.00239 * 3 2 1 5 5 H 1.48494 * 109.47174 * 30.00457 * 3 2 1 6 6 H 1.48506 * 109.46958 * 150.00027 * 3 2 1 7 7 C 1.38813 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99957 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00382 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.91478 * 31.09863 * 10 9 7 12 12 C 1.55158 * 111.00843 * 154.99684 * 10 9 7 13 13 C 1.54329 * 102.94436 * 153.57784 * 12 10 9 14 14 N 1.47020 * 107.26914 * 337.80837 * 13 12 10 15 15 C 1.34780 * 125.64901 * 178.97306 * 14 13 12 16 16 O 1.21598 * 119.99990 * 175.13982 * 15 14 13 17 17 C 1.47436 * 119.99906 * 355.14193 * 15 14 13 18 18 C 1.38747 * 120.32774 * 46.99504 * 17 15 14 19 19 C 1.38875 * 120.71951 * 179.97438 * 18 17 15 20 20 C 1.36353 * 121.06031 * 0.02562 * 19 18 17 21 21 C 1.40440 * 120.08430 * 0.02562 * 20 19 18 22 22 C 1.40810 * 121.26748 * 180.02562 * 21 20 19 23 23 C 1.36628 * 118.15305 * 179.97438 * 22 21 20 24 24 C 1.39242 * 119.91118 * 359.97438 * 23 22 21 25 25 N 1.31224 * 121.69266 * 359.97438 * 24 23 22 26 26 C 1.33353 * 121.35636 * 359.74721 * 25 24 23 27 27 C 1.47429 * 108.70478 * 358.94310 * 14 13 12 28 28 H 0.97000 * 119.99641 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99878 * 359.97438 * 9 7 2 30 30 H 1.09003 * 110.71818 * 35.21924 * 12 10 9 31 31 H 1.08996 * 110.72033 * 271.94488 * 12 10 9 32 32 H 1.08998 * 109.88072 * 97.22814 * 13 12 10 33 33 H 1.08998 * 109.88186 * 218.23785 * 13 12 10 34 34 H 1.07997 * 119.64337 * 359.97438 * 18 17 15 35 35 H 1.08001 * 119.46807 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.95953 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.92286 * 0.02562 * 22 21 20 38 38 H 1.07998 * 120.04647 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.15270 * 180.02562 * 24 23 22 40 40 H 1.09006 * 110.36414 * 142.96844 * 27 14 13 41 41 H 1.09003 * 110.36270 * 265.17590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 3.0079 -3.5582 0.5235 12 6 1.1995 -4.7951 0.6107 13 6 1.7703 -6.0600 -0.0646 14 7 2.4294 -5.6318 -1.3070 15 6 3.0700 -6.4396 -2.1752 16 8 3.5039 -5.9893 -3.2180 17 6 3.2444 -7.8694 -1.8604 18 6 2.1737 -8.6204 -1.3970 19 6 2.3287 -9.9679 -1.0986 20 6 3.5333 -10.5882 -1.2516 21 6 4.6436 -9.8650 -1.7170 22 6 5.8988 -10.4807 -1.8847 23 6 6.9354 -9.7171 -2.3419 24 6 6.7319 -8.3697 -2.6279 25 7 5.5597 -7.8010 -2.4708 26 6 4.5063 -8.4919 -2.0334 27 6 2.2731 -4.1724 -1.4464 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 0.1476 -4.6639 0.3571 31 1 1.3340 -4.8408 1.6914 32 1 2.4957 -6.5368 0.5946 33 1 0.9625 -6.7556 -0.2915 34 1 1.2093 -8.1522 -1.2670 35 1 1.4816 -10.5334 -0.7396 36 1 3.6337 -11.6371 -1.0145 37 1 6.0380 -11.5276 -1.6589 38 1 7.9114 -10.1580 -2.4813 39 1 7.5598 -7.7776 -2.9890 40 1 3.1740 -3.7337 -1.8757 41 1 1.4070 -3.9413 -2.0665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019101433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:59 Heat of formation + Delta-G solvation = 22.191070 kcal Electronic energy + Delta-G solvation = -24738.688537 eV Core-core repulsion = 21196.958281 eV Total energy + Delta-G solvation = -3541.730256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02900 -40.76167 -38.65089 -37.91523 -35.96900 -34.48657 -33.37446 -31.58988 -31.45755 -30.94334 -29.04511 -26.31715 -25.45716 -24.54550 -24.44833 -23.19847 -21.73475 -20.53508 -19.40630 -19.37104 -18.36597 -17.90370 -17.41723 -17.24199 -16.43883 -16.32440 -15.67430 -15.60170 -15.35661 -15.22837 -14.82970 -14.70815 -14.36982 -14.35481 -13.94275 -13.82789 -13.63807 -13.17188 -12.99632 -12.91260 -12.76481 -12.55299 -12.38406 -12.26560 -12.13017 -11.81740 -11.59402 -11.52873 -11.15454 -11.01901 -10.31602 -9.80151 -9.73334 -9.26250 -9.10728 -8.00065 -5.30148 -0.76405 -0.17127 0.79777 1.45294 1.47541 1.55304 1.64410 1.88069 2.09655 2.53174 3.10581 3.26752 3.31304 3.41889 3.61950 3.74572 3.79577 3.89382 3.98196 4.04774 4.07895 4.15263 4.23113 4.32190 4.42825 4.51757 4.52213 4.65736 4.68636 4.80905 4.91516 4.96189 5.01919 5.09084 5.16512 5.21022 5.25008 5.33200 5.37936 5.49003 5.58125 5.85031 6.21874 6.48947 7.01561 7.09942 7.29201 7.99320 8.25139 9.22562 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.003007 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.194720 B = 9308.868254 C =10098.706027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.072 0.928 9 N -0.720 5.720 10 C 0.167 3.833 11 H 0.060 0.940 12 C -0.127 4.127 13 C 0.105 3.895 14 N -0.612 5.612 15 C 0.570 3.430 16 O -0.576 6.576 17 C -0.140 4.140 18 C -0.054 4.054 19 C -0.123 4.123 20 C -0.058 4.058 21 C -0.126 4.126 22 C -0.046 4.046 23 C -0.176 4.176 24 C 0.121 3.879 25 N -0.523 5.523 26 C 0.129 3.871 27 C 0.095 3.905 28 H 0.254 0.746 29 H 0.380 0.620 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.187 0.813 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.037 0.963 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -30.873 1.856 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.056 3.944 11 H 0.079 0.921 12 C -0.166 4.166 13 C -0.016 4.016 14 N -0.345 5.345 15 C 0.360 3.640 16 O -0.456 6.456 17 C -0.144 4.144 18 C -0.074 4.074 19 C -0.140 4.140 20 C -0.077 4.077 21 C -0.128 4.128 22 C -0.071 4.071 23 C -0.195 4.195 24 C -0.051 4.051 25 N -0.232 5.232 26 C 0.007 3.993 27 C -0.031 4.031 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.197 0.803 37 H 0.204 0.796 38 H 0.194 0.806 39 H 0.187 0.813 40 H 0.055 0.945 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.373 -29.615 1.128 30.797 hybrid contribution 0.237 1.150 -0.466 1.263 sum 8.610 -28.466 0.662 29.747 Atomic orbital electron populations 1.69792 1.06420 1.26297 1.58802 1.25524 0.96409 1.00943 1.03112 0.85188 0.77875 0.79652 0.77331 1.21787 1.21620 1.19465 1.19597 0.91361 0.85265 1.42043 0.91051 1.42391 1.05537 1.00299 1.87715 1.21433 0.95631 0.85876 0.91455 0.92146 1.22882 0.99986 0.92287 1.01410 1.22365 0.97445 0.97569 0.84245 1.48491 1.54346 1.07932 1.23745 1.18272 0.76703 0.86510 0.82511 1.90740 1.50981 1.77232 1.26668 1.19692 0.95018 0.92488 1.07178 1.21832 0.97562 0.95401 0.92638 1.21282 0.99603 0.93178 0.99942 1.21683 0.90611 1.01445 0.93933 1.19161 0.97730 0.92942 1.02981 1.22026 0.89954 1.01936 0.93197 1.22280 1.02420 0.94190 1.00658 1.23550 0.93900 0.94568 0.93043 1.68045 1.00767 1.40543 1.13831 1.18864 0.91968 0.91435 0.97037 1.22979 0.99417 0.79362 1.01389 0.93763 0.78739 0.90100 0.87998 0.89919 0.88210 0.83072 0.80606 0.80335 0.79616 0.80614 0.81324 0.94454 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.77 13.06 21.65 0.28 -58.48 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 4 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.25 -14.21 9.96 84.03 0.84 -13.37 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -36.48 5.24 -316.39 -1.66 -38.14 16 10 C 0.17 6.79 3.71 46.38 0.17 6.96 16 11 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 12 C -0.13 -3.70 6.60 31.78 0.21 -3.49 16 13 C 0.11 2.65 5.63 86.73 0.49 3.14 16 14 N -0.61 -21.75 3.33 -815.63 -2.71 -24.46 16 15 C 0.57 22.19 7.15 86.67 0.62 22.81 16 16 O -0.58 -28.17 16.76 -4.03 -0.07 -28.24 16 17 C -0.14 -4.18 5.46 -19.86 -0.11 -4.29 16 18 C -0.05 -1.05 8.50 22.54 0.19 -0.85 16 19 C -0.12 -1.40 9.93 21.98 0.22 -1.18 16 20 C -0.06 -0.64 9.75 22.37 0.22 -0.42 16 21 C -0.13 -2.34 5.74 -21.29 -0.12 -2.46 16 22 C -0.05 -0.55 9.90 22.52 0.22 -0.33 16 23 C -0.18 -2.42 10.03 22.13 0.22 -2.20 16 24 C 0.12 2.75 11.15 85.03 0.95 3.70 16 25 N -0.52 -17.32 9.34 -187.96 -1.76 -19.07 16 26 C 0.13 3.78 6.59 40.61 0.27 4.05 16 27 C 0.09 4.02 6.58 86.85 0.57 4.59 16 28 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.38 20.12 7.76 -92.71 -0.72 19.40 16 30 H 0.08 2.34 8.00 -2.39 -0.02 2.33 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 1.84 5.97 -2.39 -0.01 1.82 16 34 H 0.15 2.37 5.86 -2.91 -0.02 2.35 16 35 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 37 H 0.19 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.04 1.79 8.09 -2.38 -0.02 1.77 16 41 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -86.12 345.40 1.88 -84.24 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.34 Total: 21.91 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.42 Total: 13.23 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -5.84 Total: -140.15 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.07 Total: -28.24 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -86.12 1.88 -84.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019101433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.428 kcal (2) G-P(sol) polarization free energy of solvation -86.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds