Wall clock time and date at job start Fri Apr 10 2020 22:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99925 * 2 1 4 4 H 1.48503 * 109.46977 * 270.00210 * 3 2 1 5 5 H 1.48501 * 109.47098 * 30.00098 * 3 2 1 6 6 H 1.48499 * 109.47130 * 150.00491 * 3 2 1 7 7 C 1.38811 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 0.02562 * 7 2 1 9 9 N 1.36944 * 119.99702 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99441 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.78181 * 31.76412 * 10 9 7 12 12 C 1.55160 * 110.71849 * 155.00467 * 10 9 7 13 13 C 1.54910 * 101.58254 * 153.86062 * 12 10 9 14 14 N 1.47430 * 104.92955 * 322.93751 * 13 12 10 15 15 C 1.34773 * 125.64758 * 204.15010 * 14 13 12 16 16 O 1.21535 * 120.00107 * 174.77342 * 15 14 13 17 17 C 1.47906 * 119.99894 * 354.78078 * 15 14 13 18 18 C 1.38885 * 121.11268 * 321.39998 * 17 15 14 19 19 C 1.39273 * 119.58281 * 179.81936 * 18 17 15 20 20 N 1.30992 * 121.87882 * 0.45204 * 19 18 17 21 21 C 1.33537 * 121.82876 * 359.78803 * 20 19 18 22 22 C 1.40716 * 120.97053 * 179.97438 * 21 20 19 23 23 C 1.36062 * 119.74273 * 180.02562 * 22 21 20 24 24 C 1.39347 * 121.05197 * 359.97438 * 23 22 21 25 25 C 1.36249 * 120.84100 * 0.02562 * 24 23 22 26 26 C 1.40104 * 119.64089 * 359.96815 * 25 24 23 27 27 C 1.47294 * 108.55650 * 24.15504 * 14 13 12 28 28 H 0.97007 * 120.00073 * 359.97438 * 1 2 3 29 29 H 0.96991 * 120.00095 * 0.02562 * 9 7 2 30 30 H 1.08998 * 111.00173 * 35.78805 * 12 10 9 31 31 H 1.08992 * 111.00084 * 271.93935 * 12 10 9 32 32 H 1.09003 * 110.36199 * 81.82613 * 13 12 10 33 33 H 1.08993 * 110.36878 * 204.04381 * 13 12 10 34 34 H 1.08007 * 120.21025 * 0.02562 * 18 17 15 35 35 H 1.07997 * 119.05910 * 180.24195 * 19 18 17 36 36 H 1.08006 * 120.13121 * 359.97438 * 22 21 20 37 37 H 1.08003 * 119.47181 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.58157 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.17965 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.84843 * 239.49988 * 27 14 13 41 41 H 1.08994 * 110.00071 * 118.43492 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.5549 -3.2386 -0.5390 12 6 5.5254 -2.2882 -0.6158 13 6 6.3125 -3.4328 0.0698 14 7 5.7773 -3.4928 1.4422 15 6 6.4250 -3.9843 2.5170 16 8 5.9238 -3.8973 3.6208 17 6 7.7458 -4.6294 2.3534 18 6 8.0176 -5.4408 1.2594 19 6 9.2737 -6.0294 1.1351 20 7 10.2140 -5.8484 2.0290 21 6 10.0224 -5.0857 3.1082 22 6 11.0452 -4.9041 4.0574 23 6 10.8226 -4.1219 5.1482 24 6 9.5943 -3.4935 5.3436 25 6 8.5809 -3.6463 4.4457 26 6 8.7752 -4.4446 3.3108 27 6 4.4178 -2.9261 1.4403 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0007 30 1 5.9424 -1.3158 -0.3538 31 1 5.5022 -2.4230 -1.6972 32 1 6.1373 -4.3763 -0.4473 33 1 7.3778 -3.2030 0.0877 34 1 7.2608 -5.6115 0.5080 35 1 9.4772 -6.6555 0.2790 36 1 12.0029 -5.3845 3.9211 37 1 11.6105 -3.9859 5.8743 38 1 9.4436 -2.8775 6.2177 39 1 7.6334 -3.1540 4.6075 40 1 4.3719 -2.0721 2.1162 41 1 3.6978 -3.6833 1.7506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019108995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:05 Heat of formation + Delta-G solvation = 49.555968 kcal Electronic energy + Delta-G solvation = -24817.720167 eV Core-core repulsion = 21277.176542 eV Total energy + Delta-G solvation = -3540.543625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33098 -39.66430 -37.55149 -37.31214 -34.44744 -33.63874 -31.77403 -30.83864 -30.39845 -29.93963 -28.02360 -25.53356 -23.91332 -23.84031 -22.74205 -22.37655 -20.43800 -19.61419 -18.53283 -17.84518 -17.66781 -17.06098 -16.42060 -16.05152 -15.29263 -14.99915 -14.75648 -14.47809 -14.34663 -14.12849 -13.98389 -13.83874 -13.27764 -13.18532 -12.76732 -12.67663 -12.30230 -12.08809 -12.02935 -11.77908 -11.61256 -11.41927 -10.98924 -10.88701 -10.80194 -10.53622 -10.38400 -10.17123 -9.70443 -9.58607 -9.09837 -9.07322 -8.61919 -8.48430 -7.46667 -5.88566 -3.27319 -0.08990 0.51695 1.51093 2.55220 2.74917 2.93710 3.30206 3.32494 3.38971 3.84591 3.95813 4.15173 4.39590 4.45100 4.48537 4.57553 4.67394 4.83633 4.87446 4.96421 5.04777 5.07168 5.21706 5.29462 5.34707 5.49830 5.53505 5.55638 5.71318 5.73112 5.76504 5.80510 6.05070 6.07526 6.11839 6.18938 6.24420 6.29226 6.45808 6.56453 6.64410 7.47514 7.56972 7.84469 8.03763 8.29718 9.05649 9.77747 9.94859 11.28938 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.003127 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.767953 B = 8951.821188 C = 9511.531610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.256 4.256 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.079 0.921 12 C -0.145 4.145 13 C 0.098 3.902 14 N -0.603 5.603 15 C 0.567 3.433 16 O -0.527 6.527 17 C -0.056 4.056 18 C -0.145 4.145 19 C 0.129 3.871 20 N -0.464 5.464 21 C 0.126 3.874 22 C -0.098 4.098 23 C -0.097 4.097 24 C -0.117 4.117 25 C -0.088 4.088 26 C -0.069 4.069 27 C 0.082 3.918 28 H 0.262 0.738 29 H 0.365 0.635 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.166 0.834 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.966 -10.579 3.087 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.111 0.889 9 N -0.376 5.376 10 C 0.066 3.934 11 H 0.097 0.903 12 C -0.184 4.184 13 C -0.026 4.026 14 N -0.337 5.337 15 C 0.354 3.646 16 O -0.405 6.405 17 C -0.067 4.067 18 C -0.166 4.166 19 C -0.043 4.043 20 N -0.172 5.172 21 C 0.004 3.996 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.135 4.135 25 C -0.107 4.107 26 C -0.071 4.071 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.164 0.836 40 H 0.093 0.907 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.267 -10.941 3.709 25.977 hybrid contribution -0.342 1.557 0.125 1.599 sum 22.925 -9.384 3.833 25.066 Atomic orbital electron populations 1.69696 1.05152 1.26099 1.56457 1.24688 0.95234 0.97318 1.01344 0.86572 0.79266 0.84935 0.77855 1.20879 1.21546 1.20304 1.19080 0.80228 0.94949 1.44316 0.88903 1.42723 1.04232 1.01506 1.89186 1.21180 0.90658 0.90273 0.91270 0.90256 1.23152 0.96713 0.97957 1.00609 1.22496 0.98481 0.99497 0.82083 1.48545 1.17665 1.59583 1.07857 1.17736 0.84000 0.79015 0.83819 1.90780 1.67768 1.57778 1.24167 1.20416 0.93805 0.97785 0.94707 1.22564 0.98998 0.97481 0.97523 1.22916 0.88349 0.96069 0.96996 1.67801 1.33348 1.14334 1.01755 1.18841 0.92313 0.94821 0.93594 1.20790 0.98377 0.99329 0.93179 1.20974 0.97397 0.96076 0.97269 1.21044 0.93007 0.99738 0.99703 1.21413 1.00301 0.96548 0.92434 1.18640 0.93562 0.99105 0.95829 1.23331 0.80140 0.98576 1.02253 0.92828 0.80198 0.90695 0.89416 0.90863 0.90855 0.83511 0.81678 0.84544 0.85130 0.85232 0.83630 0.90716 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.33 27.74 -169.99 -4.71 16.61 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.26 -6.85 10.44 -15.06 -0.16 -7.01 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -16.14 4.95 -51.65 -0.26 -16.40 16 10 C 0.18 3.05 3.61 -66.09 -0.24 2.81 16 11 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 12 C -0.15 -1.87 6.71 -24.58 -0.17 -2.03 16 13 C 0.10 1.07 5.28 -2.53 -0.01 1.05 16 14 N -0.60 -8.77 3.34 -171.39 -0.57 -9.34 16 15 C 0.57 8.81 7.19 -12.30 -0.09 8.72 16 16 O -0.53 -9.93 15.10 5.34 0.08 -9.85 16 17 C -0.06 -0.73 5.40 -104.34 -0.56 -1.29 16 18 C -0.15 -1.43 8.33 -38.96 -0.32 -1.76 16 19 C 0.13 1.18 11.14 -17.53 -0.20 0.99 16 20 N -0.46 -5.34 10.30 -11.01 -0.11 -5.46 16 21 C 0.13 1.54 6.61 -84.87 -0.56 0.98 16 22 C -0.10 -0.98 9.98 -39.43 -0.39 -1.37 16 23 C -0.10 -0.85 9.94 -39.95 -0.40 -1.25 16 24 C -0.12 -1.18 9.96 -39.88 -0.40 -1.58 16 25 C -0.09 -1.14 9.17 -39.60 -0.36 -1.50 16 26 C -0.07 -0.91 5.76 -106.52 -0.61 -1.52 16 27 C 0.08 1.41 6.65 -2.91 -0.02 1.39 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.36 7.91 5.62 -40.82 -0.23 7.68 16 30 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.63 7.04 -51.93 -0.37 0.26 16 33 H 0.07 0.71 7.34 -51.93 -0.38 0.33 16 34 H 0.15 1.12 6.07 -52.48 -0.32 0.80 16 35 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 2.10 5.91 -52.49 -0.31 1.79 16 40 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -33.43 338.80 -9.27 -42.70 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.99 Total: 7.33 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -4.59 Total: -3.16 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.17 Total: -58.74 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.43 -9.27 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019108995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.256 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds