Wall clock time and date at job start Fri Apr 10 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99925 * 2 1 4 4 H 1.48503 * 109.46977 * 270.00210 * 3 2 1 5 5 H 1.48501 * 109.47098 * 30.00098 * 3 2 1 6 6 H 1.48499 * 109.47130 * 150.00491 * 3 2 1 7 7 C 1.38811 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 0.02562 * 7 2 1 9 9 N 1.36944 * 119.99702 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99441 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.78181 * 31.76412 * 10 9 7 12 12 C 1.55160 * 110.71849 * 155.00467 * 10 9 7 13 13 C 1.54910 * 101.58254 * 153.86062 * 12 10 9 14 14 N 1.47430 * 104.92955 * 322.93751 * 13 12 10 15 15 C 1.34773 * 125.64758 * 204.15010 * 14 13 12 16 16 O 1.21535 * 120.00107 * 174.77342 * 15 14 13 17 17 C 1.47906 * 119.99894 * 354.78078 * 15 14 13 18 18 C 1.38885 * 121.11268 * 321.39998 * 17 15 14 19 19 C 1.39273 * 119.58281 * 179.81936 * 18 17 15 20 20 N 1.30992 * 121.87882 * 0.45204 * 19 18 17 21 21 C 1.33537 * 121.82876 * 359.78803 * 20 19 18 22 22 C 1.40716 * 120.97053 * 179.97438 * 21 20 19 23 23 C 1.36062 * 119.74273 * 180.02562 * 22 21 20 24 24 C 1.39347 * 121.05197 * 359.97438 * 23 22 21 25 25 C 1.36249 * 120.84100 * 0.02562 * 24 23 22 26 26 C 1.40104 * 119.64089 * 359.96815 * 25 24 23 27 27 C 1.47294 * 108.55650 * 24.15504 * 14 13 12 28 28 H 0.97007 * 120.00073 * 359.97438 * 1 2 3 29 29 H 0.96991 * 120.00095 * 0.02562 * 9 7 2 30 30 H 1.08998 * 111.00173 * 35.78805 * 12 10 9 31 31 H 1.08992 * 111.00084 * 271.93935 * 12 10 9 32 32 H 1.09003 * 110.36199 * 81.82613 * 13 12 10 33 33 H 1.08993 * 110.36878 * 204.04381 * 13 12 10 34 34 H 1.08007 * 120.21025 * 0.02562 * 18 17 15 35 35 H 1.07997 * 119.05910 * 180.24195 * 19 18 17 36 36 H 1.08006 * 120.13121 * 359.97438 * 22 21 20 37 37 H 1.08003 * 119.47181 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.58157 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.17965 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.84843 * 239.49988 * 27 14 13 41 41 H 1.08994 * 110.00071 * 118.43492 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.5549 -3.2386 -0.5390 12 6 5.5254 -2.2882 -0.6158 13 6 6.3125 -3.4328 0.0698 14 7 5.7773 -3.4928 1.4422 15 6 6.4250 -3.9843 2.5170 16 8 5.9238 -3.8973 3.6208 17 6 7.7458 -4.6294 2.3534 18 6 8.0176 -5.4408 1.2594 19 6 9.2737 -6.0294 1.1351 20 7 10.2140 -5.8484 2.0290 21 6 10.0224 -5.0857 3.1082 22 6 11.0452 -4.9041 4.0574 23 6 10.8226 -4.1219 5.1482 24 6 9.5943 -3.4935 5.3436 25 6 8.5809 -3.6463 4.4457 26 6 8.7752 -4.4446 3.3108 27 6 4.4178 -2.9261 1.4403 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0007 30 1 5.9424 -1.3158 -0.3538 31 1 5.5022 -2.4230 -1.6972 32 1 6.1373 -4.3763 -0.4473 33 1 7.3778 -3.2030 0.0877 34 1 7.2608 -5.6115 0.5080 35 1 9.4772 -6.6555 0.2790 36 1 12.0029 -5.3845 3.9211 37 1 11.6105 -3.9859 5.8743 38 1 9.4436 -2.8775 6.2177 39 1 7.6334 -3.1540 4.6075 40 1 4.3719 -2.0721 2.1162 41 1 3.6978 -3.6833 1.7506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019108995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:04 Heat of formation + Delta-G solvation = 26.928465 kcal Electronic energy + Delta-G solvation = -24818.701369 eV Core-core repulsion = 21277.176542 eV Total energy + Delta-G solvation = -3541.524828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -42.22371 -40.77907 -38.84345 -38.09944 -36.11474 -34.61928 -33.55057 -31.66445 -31.56244 -30.99094 -29.38832 -26.67473 -25.27284 -24.66600 -24.03895 -23.38185 -21.83952 -20.71721 -19.80222 -19.28705 -18.55100 -18.11925 -17.65253 -17.06312 -16.55277 -16.26139 -15.81949 -15.65539 -15.46372 -15.29065 -14.89431 -14.85351 -14.73877 -14.35872 -14.18630 -13.88667 -13.75926 -13.32866 -13.02895 -12.83783 -12.67911 -12.54561 -12.43652 -12.31285 -12.18743 -11.87359 -11.73532 -11.57312 -11.43018 -11.06846 -10.51548 -9.84931 -9.81057 -9.43052 -9.33497 -8.05751 -5.41611 -0.92941 -0.25381 0.63027 1.36561 1.39897 1.46269 1.53825 1.73094 1.96365 2.45481 3.02651 3.13394 3.24252 3.30452 3.47747 3.61631 3.63809 3.69923 3.81990 3.91919 4.11301 4.17255 4.25196 4.27926 4.34479 4.43093 4.49650 4.56612 4.60329 4.77809 4.82338 4.92177 4.98999 5.05375 5.10897 5.14519 5.29304 5.30990 5.44327 5.45831 5.73973 5.81981 6.18056 6.32947 6.78977 6.85348 7.02928 7.76880 7.94499 9.15207 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.003127 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.767953 B = 8951.821188 C = 9511.531610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.257 1.257 7 C -0.237 4.237 8 H 0.062 0.938 9 N -0.740 5.740 10 C 0.170 3.830 11 H 0.082 0.918 12 C -0.133 4.133 13 C 0.098 3.902 14 N -0.602 5.602 15 C 0.565 3.435 16 O -0.575 6.575 17 C -0.083 4.083 18 C -0.123 4.123 19 C 0.133 3.867 20 N -0.474 5.474 21 C 0.107 3.893 22 C -0.100 4.100 23 C -0.093 4.093 24 C -0.109 4.109 25 C -0.124 4.124 26 C -0.087 4.087 27 C 0.091 3.909 28 H 0.258 0.742 29 H 0.368 0.632 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.175 0.825 35 H 0.210 0.790 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.123 -11.533 1.625 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.182 1.182 7 C -0.367 4.367 8 H 0.080 0.920 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.100 0.900 12 C -0.171 4.171 13 C -0.023 4.023 14 N -0.334 5.334 15 C 0.354 3.646 16 O -0.455 6.455 17 C -0.094 4.094 18 C -0.144 4.144 19 C -0.039 4.039 20 N -0.183 5.183 21 C -0.014 4.014 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.090 4.090 27 C -0.034 4.034 28 H 0.067 0.933 29 H 0.202 0.798 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.192 0.808 35 H 0.226 0.774 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.060 0.940 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 27.507 -11.929 2.223 30.065 hybrid contribution -1.591 1.699 0.611 2.407 sum 25.916 -10.230 2.834 28.006 Atomic orbital electron populations 1.69877 1.07171 1.26771 1.59245 1.25501 0.96056 1.01277 1.02365 0.85447 0.78399 0.79767 0.78339 1.19661 1.22658 1.18165 1.19061 0.82402 0.93627 1.41657 0.91989 1.42705 1.02605 1.03559 1.89278 1.21404 0.92982 0.88326 0.91257 0.90028 1.23112 0.93103 0.98704 1.02195 1.22805 0.99255 1.00547 0.79701 1.48544 1.16436 1.58985 1.09446 1.18226 0.84781 0.78446 0.83149 1.90746 1.69083 1.59626 1.26086 1.20238 0.92406 1.00014 0.96779 1.22901 0.99867 0.95211 0.96382 1.23627 0.87347 0.95505 0.97435 1.67880 1.34184 1.14266 1.01945 1.19132 0.92354 0.95326 0.94627 1.21149 0.98689 0.99154 0.92853 1.21336 0.97446 0.94861 0.97589 1.21355 0.92870 0.99097 0.99337 1.21317 1.00276 0.98437 0.94235 1.18811 0.94384 0.99749 0.96066 1.22907 0.81909 0.97055 1.01577 0.93269 0.79828 0.91039 0.86519 0.87210 0.88590 0.80813 0.77380 0.82466 0.81477 0.83355 0.86469 0.94003 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.07 13.97 21.65 0.30 -61.77 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.95 44.55 27.74 68.60 1.90 46.46 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.26 -10.97 6.52 99.48 0.65 -10.32 16 7 C -0.24 -12.97 10.44 84.03 0.88 -12.09 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.74 -32.32 4.95 -317.32 -1.57 -33.89 16 10 C 0.17 5.70 3.61 46.18 0.17 5.87 16 11 H 0.08 2.71 8.09 -2.39 -0.02 2.70 16 12 C -0.13 -2.99 6.71 31.99 0.21 -2.77 16 13 C 0.10 1.81 5.28 86.85 0.46 2.26 16 14 N -0.60 -17.11 3.34 -814.44 -2.72 -19.83 16 15 C 0.56 17.88 7.19 86.80 0.62 18.51 16 16 O -0.57 -23.14 15.10 -3.83 -0.06 -23.20 16 17 C -0.08 -2.10 5.40 -19.68 -0.11 -2.20 16 18 C -0.12 -2.03 8.33 22.67 0.19 -1.84 16 19 C 0.13 1.91 11.14 85.07 0.95 2.85 16 20 N -0.47 -9.53 10.30 -188.74 -1.94 -11.47 16 21 C 0.11 2.42 6.61 40.34 0.27 2.69 16 22 C -0.10 -1.76 9.98 22.37 0.22 -1.54 16 23 C -0.09 -1.40 9.94 22.03 0.22 -1.18 16 24 C -0.11 -2.12 9.96 22.07 0.22 -1.90 16 25 C -0.12 -3.31 9.17 22.26 0.20 -3.11 16 26 C -0.09 -2.30 5.76 -21.10 -0.12 -2.42 16 27 C 0.09 3.24 6.65 86.68 0.58 3.81 16 28 H 0.26 15.62 8.31 -92.70 -0.77 14.84 16 29 H 0.37 15.52 5.62 -92.72 -0.52 15.00 16 30 H 0.07 1.70 8.01 -2.39 -0.02 1.69 16 31 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 1.29 7.04 -2.39 -0.02 1.28 16 33 H 0.10 1.43 7.34 -2.39 -0.02 1.42 16 34 H 0.17 1.80 6.07 -2.91 -0.02 1.78 16 35 H 0.21 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.12 3.74 5.91 -2.91 -0.02 3.72 16 40 H 0.04 1.74 8.03 -2.39 -0.02 1.72 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -78.86 338.80 1.83 -77.03 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.49 Total: 22.74 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.43 Total: 3.93 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -5.93 Total: -126.96 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.46 kcal Total: -78.86 1.83 -77.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019108995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.962 kcal (2) G-P(sol) polarization free energy of solvation -78.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds