Wall clock time and date at job start Fri Apr 10 2020 22:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48503 * 109.46857 * 269.99904 * 3 2 1 5 5 H 1.48495 * 109.46956 * 29.99618 * 3 2 1 6 6 H 1.48497 * 109.47082 * 149.99944 * 3 2 1 7 7 C 1.38813 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99939 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99910 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.91890 * 37.44571 * 10 9 7 12 12 C 1.55155 * 111.00569 * 161.35187 * 10 9 7 13 13 C 1.54330 * 103.02369 * 153.38025 * 12 10 9 14 14 N 1.47021 * 107.26616 * 338.13720 * 13 12 10 15 15 C 1.34771 * 125.64964 * 178.85052 * 14 13 12 16 16 O 1.21594 * 119.99997 * 184.83218 * 15 14 13 17 17 C 1.47554 * 120.00273 * 4.83182 * 15 14 13 18 18 C 1.38699 * 120.38387 * 46.74733 * 17 15 14 19 19 C 1.38966 * 120.53469 * 179.97438 * 18 17 15 20 20 C 1.36200 * 121.23843 * 359.80283 * 19 18 17 21 21 C 1.40714 * 120.20117 * 0.43308 * 20 19 18 22 22 N 1.33688 * 120.93597 * 179.82957 * 21 20 19 23 23 C 1.31068 * 121.33899 * 179.77131 * 22 21 20 24 24 C 1.39336 * 121.70618 * 359.94635 * 23 22 21 25 25 C 1.36681 * 119.86976 * 0.03433 * 24 23 22 26 26 C 1.40466 * 118.16778 * 359.97438 * 25 24 23 27 27 C 1.47430 * 108.70334 * 358.59061 * 14 13 12 28 28 H 0.96993 * 119.99719 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99700 * 359.97438 * 9 7 2 30 30 H 1.09007 * 110.71808 * 271.93797 * 12 10 9 31 31 H 1.09002 * 110.72327 * 35.02830 * 12 10 9 32 32 H 1.08996 * 109.99385 * 218.66168 * 13 12 10 33 33 H 1.08995 * 109.78032 * 97.49240 * 13 12 10 34 34 H 1.07995 * 119.72930 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.37791 * 180.02562 * 19 18 17 36 36 H 1.08003 * 119.89751 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.14297 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.06787 * 180.02562 * 24 23 22 39 39 H 1.07993 * 120.91314 * 179.97438 * 25 24 23 40 40 H 1.08992 * 110.37201 * 143.19630 * 27 14 13 41 41 H 1.08998 * 110.36102 * 265.40942 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.6069 -3.2120 -0.6184 12 6 5.5789 -2.2663 -0.4615 13 6 6.3260 -3.4280 0.2272 14 7 5.5076 -3.8558 1.3712 15 6 5.8044 -4.8628 2.2163 16 8 5.0103 -5.1874 3.0780 17 6 7.0930 -5.5715 2.0960 18 6 8.2750 -4.8593 1.9567 19 6 9.4904 -5.5235 1.8437 20 6 9.5572 -6.8837 1.8701 21 6 8.3831 -7.6475 2.0047 22 7 8.4312 -8.9833 2.0289 23 6 7.3431 -9.7024 2.1584 24 6 6.0860 -9.1134 2.2780 25 6 5.9678 -7.7518 2.2609 26 6 7.1374 -6.9864 2.1217 27 6 4.3117 -2.9968 1.4445 28 1 -0.4849 0.8400 -0.0004 29 1 3.8646 -0.3622 0.0007 30 1 5.6558 -2.3444 -1.5460 31 1 5.9613 -1.3053 -0.1175 32 1 7.3017 -3.0891 0.5755 33 1 6.4466 -4.2551 -0.4723 34 1 8.2506 -3.7798 1.9359 35 1 10.3995 -4.9504 1.7364 36 1 10.5135 -7.3775 1.7809 37 1 7.4230 -10.7793 2.1732 38 1 5.2067 -9.7315 2.3838 39 1 5.0018 -7.2776 2.3519 40 1 3.4455 -3.5785 1.7595 41 1 4.4816 -2.1681 2.1318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019211603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:08 Heat of formation + Delta-G solvation = 48.574689 kcal Electronic energy + Delta-G solvation = -24802.509623 eV Core-core repulsion = 21261.923446 eV Total energy + Delta-G solvation = -3540.586177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28112 -39.73895 -37.56644 -37.09326 -34.36132 -33.63025 -31.84544 -30.86424 -30.57093 -29.91341 -27.88093 -25.15057 -24.22212 -23.79670 -22.90646 -22.23584 -20.38546 -19.54004 -18.60411 -17.85434 -17.29570 -17.20931 -16.48358 -16.04977 -15.44819 -14.99780 -14.74676 -14.49271 -14.34375 -14.00839 -13.84834 -13.53217 -13.44381 -13.10354 -12.78525 -12.64894 -12.50668 -12.23931 -11.94251 -11.90731 -11.63210 -11.29438 -10.99188 -10.83999 -10.77957 -10.55259 -10.21622 -10.13581 -9.69273 -9.59370 -9.10255 -9.09310 -8.61589 -8.44890 -7.44026 -5.87013 -3.25860 -0.04704 0.53165 1.54792 2.44452 2.79519 3.03771 3.29983 3.32027 3.39127 3.84055 3.98109 4.21623 4.45219 4.49205 4.50415 4.59139 4.70225 4.74454 4.82661 4.97386 5.00679 5.11129 5.19513 5.30824 5.49150 5.49497 5.55867 5.59342 5.68818 5.75651 5.80115 5.82569 5.98076 6.03720 6.05534 6.17284 6.21132 6.34792 6.45167 6.49213 6.68472 7.54606 7.60917 7.86729 8.10777 8.31291 9.07425 9.79071 9.96390 11.30614 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.003046 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.140794 B = 9191.093930 C = 9874.738833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.074 0.926 12 C -0.144 4.144 13 C 0.101 3.899 14 N -0.606 5.606 15 C 0.569 3.431 16 O -0.533 6.533 17 C -0.094 4.094 18 C -0.083 4.083 19 C -0.105 4.105 20 C -0.076 4.076 21 C 0.123 3.877 22 N -0.477 5.477 23 C 0.133 3.867 24 C -0.176 4.176 25 C -0.047 4.047 26 C -0.070 4.070 27 C 0.082 3.918 28 H 0.261 0.739 29 H 0.365 0.635 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.813 -14.440 1.485 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.110 0.890 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.092 0.908 12 C -0.182 4.182 13 C -0.022 4.022 14 N -0.339 5.339 15 C 0.357 3.643 16 O -0.411 6.411 17 C -0.098 4.098 18 C -0.102 4.102 19 C -0.125 4.125 20 C -0.095 4.095 21 C 0.001 3.999 22 N -0.185 5.185 23 C -0.039 4.039 24 C -0.195 4.195 25 C -0.073 4.073 26 C -0.072 4.072 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.158 0.842 39 H 0.167 0.833 40 H 0.097 0.903 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.987 -15.004 1.883 25.868 hybrid contribution -0.292 1.666 0.202 1.704 sum 20.695 -13.338 2.086 24.709 Atomic orbital electron populations 1.69700 1.05157 1.26063 1.56542 1.24695 0.95241 0.97310 1.01422 0.86553 0.79221 0.84902 0.77830 1.20915 1.21604 1.20273 1.19072 0.80237 0.94949 1.44175 0.88963 1.42643 1.04213 1.01414 1.89422 1.21270 0.90006 0.89841 0.92295 0.90838 1.22954 0.96865 0.97576 1.00848 1.22160 0.94571 0.97683 0.87815 1.48470 1.24769 1.32165 1.28512 1.17785 0.85943 0.79239 0.81362 1.90806 1.49727 1.65461 1.35082 1.19940 0.94060 0.92654 1.03174 1.21472 0.91429 1.00542 0.96725 1.20828 0.97933 0.94267 0.99458 1.20943 0.97277 0.93370 0.97909 1.18806 0.92174 0.89925 0.98949 1.68054 1.31757 1.05527 1.13170 1.22997 0.87763 1.00404 0.92764 1.21986 0.99540 0.95629 1.02384 1.21789 0.98983 0.94037 0.92486 1.18580 0.94567 0.92769 1.01307 1.23413 0.86230 0.93007 1.01637 0.92849 0.80197 0.89754 0.90548 0.91405 0.91345 0.84583 0.84530 0.84360 0.82201 0.84192 0.83282 0.90335 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.18 27.74 -169.99 -4.71 16.47 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 7 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -16.19 5.08 -51.35 -0.26 -16.45 16 10 C 0.18 3.13 3.69 -65.78 -0.24 2.89 16 11 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 12 C -0.14 -1.86 6.57 -24.89 -0.16 -2.02 16 13 C 0.10 1.15 5.95 -3.06 -0.02 1.14 16 14 N -0.61 -8.96 3.33 -171.74 -0.57 -9.53 16 15 C 0.57 8.89 6.86 -12.46 -0.09 8.81 16 16 O -0.53 -10.11 15.45 5.28 0.08 -10.02 16 17 C -0.09 -1.22 5.37 -104.65 -0.56 -1.78 16 18 C -0.08 -0.83 8.42 -39.14 -0.33 -1.16 16 19 C -0.11 -0.86 9.92 -40.04 -0.40 -1.26 16 20 C -0.08 -0.72 9.96 -39.38 -0.39 -1.12 16 21 C 0.12 1.47 6.60 -84.88 -0.56 0.91 16 22 N -0.48 -5.56 10.34 -10.99 -0.11 -5.68 16 23 C 0.13 1.26 11.15 -17.47 -0.19 1.07 16 24 C -0.18 -1.72 10.03 -39.74 -0.40 -2.11 16 25 C -0.05 -0.59 9.24 -39.31 -0.36 -0.95 16 26 C -0.07 -0.91 5.76 -106.54 -0.61 -1.52 16 27 C 0.08 1.44 6.62 -2.52 -0.02 1.42 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.36 7.79 5.57 -40.82 -0.23 7.56 16 30 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.08 0.96 7.99 -51.93 -0.42 0.54 16 32 H 0.07 0.62 5.87 -51.93 -0.31 0.31 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.14 1.14 6.33 -52.49 -0.33 0.81 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.15 2.05 6.22 -52.49 -0.33 1.72 16 40 H 0.08 1.54 7.99 -51.93 -0.41 1.13 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -33.63 339.88 -9.27 -42.89 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.99 Total: 7.42 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -4.59 Total: -2.54 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.17 Total: -59.34 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.63 -9.27 -42.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019211603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.469 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds