Wall clock time and date at job start Fri Apr 10 2020 22:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48500 * 109.46928 * 269.99652 * 3 2 1 5 5 H 1.48496 * 109.47072 * 29.99736 * 3 2 1 6 6 H 1.48504 * 109.47044 * 149.99882 * 3 2 1 7 7 C 1.38817 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99571 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99825 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.91333 * 37.44908 * 10 9 7 12 12 C 1.55156 * 111.00327 * 161.34775 * 10 9 7 13 13 C 1.54334 * 103.01930 * 153.38496 * 12 10 9 14 14 N 1.47023 * 107.26714 * 338.14014 * 13 12 10 15 15 C 1.34769 * 125.64957 * 178.84886 * 14 13 12 16 16 O 1.21540 * 120.00144 * 179.69154 * 15 14 13 17 17 C 1.47944 * 120.00329 * 359.69639 * 15 14 13 18 18 N 1.32212 * 120.15586 * 354.40007 * 17 15 14 19 19 C 1.32023 * 122.68219 * 180.02562 * 18 17 15 20 20 C 1.36689 * 122.02855 * 359.94891 * 19 18 17 21 21 C 1.40532 * 118.84869 * 0.02781 * 20 19 18 22 22 C 1.40319 * 122.22222 * 179.97438 * 21 20 19 23 23 C 1.36204 * 119.45742 * 180.02562 * 22 21 20 24 24 C 1.39385 * 120.99774 * 359.97438 * 23 22 21 25 25 C 1.36261 * 121.08318 * 359.97438 * 24 23 22 26 26 C 1.40088 * 119.53875 * 0.02562 * 25 24 23 27 27 C 1.47424 * 108.70105 * 358.58755 * 14 13 12 28 28 H 0.97000 * 119.99413 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00619 * 359.97438 * 9 7 2 30 30 H 1.09004 * 110.72358 * 271.94227 * 12 10 9 31 31 H 1.08996 * 110.71790 * 35.21695 * 12 10 9 32 32 H 1.08996 * 109.99206 * 218.66801 * 13 12 10 33 33 H 1.09001 * 109.78099 * 97.49908 * 13 12 10 34 34 H 1.07997 * 118.98794 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.57625 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.27479 * 0.04074 * 22 21 20 37 37 H 1.07998 * 119.50410 * 180.27219 * 23 22 21 38 38 H 1.08006 * 119.46150 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.23198 * 180.02562 * 25 24 23 40 40 H 1.08996 * 110.37110 * 143.19384 * 27 14 13 41 41 H 1.08998 * 110.36801 * 265.40940 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9525 -3.5897 0.6196 12 6 1.1474 -4.8246 0.4638 13 6 1.7796 -6.0527 -0.2248 14 7 2.5590 -5.5582 -1.3691 15 6 3.2824 -6.3190 -2.2143 16 8 3.8855 -5.8009 -3.1335 17 6 3.3423 -7.7848 -2.0232 18 7 2.7801 -8.3400 -0.9632 19 6 2.8039 -9.6415 -0.7430 20 6 3.4151 -10.5111 -1.6025 21 6 4.0368 -10.0008 -2.7549 22 6 4.6849 -10.8287 -3.6842 23 6 5.2697 -10.2739 -4.7820 24 6 5.2333 -8.8971 -4.9962 25 6 4.6118 -8.0642 -4.1148 26 6 3.9992 -8.5987 -2.9740 27 6 2.4131 -4.0931 -1.4428 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 1.1770 -4.9299 1.5483 31 1 0.1246 -4.6768 0.1174 32 1 0.9982 -6.7282 -0.5727 33 1 2.4358 -6.5706 0.4747 34 1 2.3255 -10.0312 0.1433 35 1 3.4201 -11.5718 -1.3995 36 1 4.7196 -11.8971 -3.5303 37 1 5.7649 -10.9108 -5.5000 38 1 5.7056 -8.4835 -5.8751 39 1 4.5916 -6.9994 -4.2945 40 1 3.3499 -3.6339 -1.7582 41 1 1.6102 -3.8259 -2.1299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019303528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:12 Heat of formation + Delta-G solvation = 53.109372 kcal Electronic energy + Delta-G solvation = -24727.248048 eV Core-core repulsion = 21186.858510 eV Total energy + Delta-G solvation = -3540.389538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29411 -39.41594 -37.58422 -37.28576 -34.14057 -33.15234 -31.64826 -31.32897 -30.00430 -29.48942 -27.57481 -25.37202 -23.90363 -23.71176 -22.84449 -22.28171 -20.18487 -19.70788 -18.16846 -17.55121 -17.33557 -16.76831 -16.09733 -16.01865 -15.72125 -14.87033 -14.73982 -14.38159 -14.03766 -13.95665 -13.60643 -13.35404 -13.24872 -13.11049 -12.76509 -12.40713 -12.28568 -12.17382 -12.07926 -11.64352 -11.38867 -11.03939 -10.83338 -10.68472 -10.39583 -10.25907 -10.08351 -9.91127 -9.72445 -9.40172 -9.35492 -8.98802 -8.43862 -8.20629 -7.06375 -5.82446 -3.12962 -0.12417 0.65722 1.53558 2.57273 3.04072 3.13541 3.42975 3.48502 3.49633 3.92202 3.98653 4.30945 4.46076 4.54649 4.56416 4.65705 4.86507 4.90434 5.06825 5.11510 5.18271 5.31543 5.42487 5.47714 5.58520 5.65797 5.78723 5.79383 5.88916 5.91073 6.11140 6.13131 6.19857 6.26693 6.31203 6.40705 6.46217 6.56572 6.62002 6.66906 6.91917 7.53984 7.67539 7.74887 8.25794 8.35484 9.47352 10.00696 10.35842 11.39652 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.002905 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.205432 B = 9635.423928 C =10501.931593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.145 4.145 13 C 0.120 3.880 14 N -0.586 5.586 15 C 0.577 3.423 16 O -0.538 6.538 17 C 0.134 3.866 18 N -0.451 5.451 19 C 0.072 3.928 20 C -0.137 4.137 21 C -0.030 4.030 22 C -0.122 4.122 23 C -0.094 4.094 24 C -0.126 4.126 25 C -0.087 4.087 26 C -0.073 4.073 27 C 0.080 3.920 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.174 0.826 40 H 0.073 0.927 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -25.138 -4.577 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.184 4.184 13 C -0.003 4.003 14 N -0.317 5.317 15 C 0.363 3.637 16 O -0.416 6.416 17 C -0.018 4.018 18 N -0.163 5.163 19 C -0.073 4.073 20 C -0.157 4.157 21 C -0.036 4.036 22 C -0.140 4.140 23 C -0.113 4.113 24 C -0.145 4.145 25 C -0.106 4.106 26 C -0.076 4.076 27 C -0.045 4.045 28 H 0.066 0.934 29 H 0.222 0.778 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.191 0.809 40 H 0.092 0.908 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.989 -24.254 -4.381 25.618 hybrid contribution 0.492 0.111 -0.630 0.807 sum 7.481 -24.143 -5.011 25.768 Atomic orbital electron populations 1.69664 1.05160 1.25894 1.57088 1.24772 0.95532 0.97840 1.02425 0.86169 0.78690 0.83582 0.77621 1.21572 1.21728 1.20633 1.19264 0.91150 0.83906 1.43483 0.90920 1.42316 1.05809 0.99387 1.87638 1.21314 0.94769 0.86168 0.91787 0.91720 1.23007 1.00213 0.94569 1.00601 1.22101 0.94785 0.96050 0.87369 1.48421 1.45928 1.09191 1.28120 1.17390 0.79828 0.84372 0.82068 1.90575 1.46246 1.72952 1.31864 1.21441 0.95092 0.94263 0.90970 1.67587 1.15616 1.13941 1.19156 1.22261 0.97584 0.88080 0.99400 1.22121 0.97937 1.01400 0.94251 1.18196 0.97457 0.92509 0.95392 1.20903 0.99157 0.99395 0.94585 1.21075 0.97678 0.95460 0.97066 1.21129 0.99950 0.93321 1.00052 1.22241 0.93227 1.03663 0.91482 1.18705 0.99650 0.92744 0.96533 1.23545 1.02165 0.76492 1.02312 0.93364 0.77820 0.90168 0.90646 0.91426 0.90449 0.82279 0.84163 0.85102 0.85607 0.85396 0.80905 0.90803 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.73 9.98 -15.06 -0.15 -6.88 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.71 -17.32 5.28 -51.35 -0.27 -17.60 16 10 C 0.17 3.35 3.69 -65.78 -0.24 3.11 16 11 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 12 C -0.15 -2.26 6.57 -24.89 -0.16 -2.43 16 13 C 0.12 1.73 5.42 -3.06 -0.02 1.71 16 14 N -0.59 -9.91 3.33 -171.59 -0.57 -10.48 16 15 C 0.58 9.88 7.81 -12.29 -0.10 9.79 16 16 O -0.54 -10.19 13.70 5.33 0.07 -10.11 16 17 C 0.13 1.97 6.77 -82.55 -0.56 1.41 16 18 N -0.45 -5.82 6.89 -9.81 -0.07 -5.89 16 19 C 0.07 0.71 11.06 -18.03 -0.20 0.51 16 20 C -0.14 -1.20 9.88 -39.28 -0.39 -1.59 16 21 C -0.03 -0.33 5.75 -106.82 -0.61 -0.94 16 22 C -0.12 -1.05 9.82 -39.53 -0.39 -1.44 16 23 C -0.09 -0.78 9.95 -39.89 -0.40 -1.18 16 24 C -0.13 -1.27 9.95 -39.87 -0.40 -1.67 16 25 C -0.09 -1.14 9.23 -39.60 -0.37 -1.50 16 26 C -0.07 -0.99 5.76 -106.59 -0.61 -1.60 16 27 C 0.08 1.53 6.60 -2.53 -0.02 1.51 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 9.94 7.71 -40.82 -0.31 9.62 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 32 H 0.07 0.92 7.71 -51.93 -0.40 0.52 16 33 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 34 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.17 2.55 4.96 -52.49 -0.26 2.29 16 40 H 0.07 1.50 8.04 -51.93 -0.42 1.09 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -31.81 341.40 -9.81 -41.62 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.11 Total: 8.55 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -4.70 Total: -1.55 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.18 Total: -60.85 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.81 -9.81 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019303528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.727 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds