Wall clock time and date at job start Fri Apr 10 2020 22:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48500 * 109.46928 * 269.99652 * 3 2 1 5 5 H 1.48496 * 109.47072 * 29.99736 * 3 2 1 6 6 H 1.48504 * 109.47044 * 149.99882 * 3 2 1 7 7 C 1.38817 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99571 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99825 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.91333 * 37.44908 * 10 9 7 12 12 C 1.55156 * 111.00327 * 161.34775 * 10 9 7 13 13 C 1.54334 * 103.01930 * 153.38496 * 12 10 9 14 14 N 1.47023 * 107.26714 * 338.14014 * 13 12 10 15 15 C 1.34769 * 125.64957 * 178.84886 * 14 13 12 16 16 O 1.21540 * 120.00144 * 179.69154 * 15 14 13 17 17 C 1.47944 * 120.00329 * 359.69639 * 15 14 13 18 18 N 1.32212 * 120.15586 * 354.40007 * 17 15 14 19 19 C 1.32023 * 122.68219 * 180.02562 * 18 17 15 20 20 C 1.36689 * 122.02855 * 359.94891 * 19 18 17 21 21 C 1.40532 * 118.84869 * 0.02781 * 20 19 18 22 22 C 1.40319 * 122.22222 * 179.97438 * 21 20 19 23 23 C 1.36204 * 119.45742 * 180.02562 * 22 21 20 24 24 C 1.39385 * 120.99774 * 359.97438 * 23 22 21 25 25 C 1.36261 * 121.08318 * 359.97438 * 24 23 22 26 26 C 1.40088 * 119.53875 * 0.02562 * 25 24 23 27 27 C 1.47424 * 108.70105 * 358.58755 * 14 13 12 28 28 H 0.97000 * 119.99413 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00619 * 359.97438 * 9 7 2 30 30 H 1.09004 * 110.72358 * 271.94227 * 12 10 9 31 31 H 1.08996 * 110.71790 * 35.21695 * 12 10 9 32 32 H 1.08996 * 109.99206 * 218.66801 * 13 12 10 33 33 H 1.09001 * 109.78099 * 97.49908 * 13 12 10 34 34 H 1.07997 * 118.98794 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.57625 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.27479 * 0.04074 * 22 21 20 37 37 H 1.07998 * 119.50410 * 180.27219 * 23 22 21 38 38 H 1.08006 * 119.46150 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.23198 * 180.02562 * 25 24 23 40 40 H 1.08996 * 110.37110 * 143.19384 * 27 14 13 41 41 H 1.08998 * 110.36801 * 265.40940 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9525 -3.5897 0.6196 12 6 1.1474 -4.8246 0.4638 13 6 1.7796 -6.0527 -0.2248 14 7 2.5590 -5.5582 -1.3691 15 6 3.2824 -6.3190 -2.2143 16 8 3.8855 -5.8009 -3.1335 17 6 3.3423 -7.7848 -2.0232 18 7 2.7801 -8.3400 -0.9632 19 6 2.8039 -9.6415 -0.7430 20 6 3.4151 -10.5111 -1.6025 21 6 4.0368 -10.0008 -2.7549 22 6 4.6849 -10.8287 -3.6842 23 6 5.2697 -10.2739 -4.7820 24 6 5.2333 -8.8971 -4.9962 25 6 4.6118 -8.0642 -4.1148 26 6 3.9992 -8.5987 -2.9740 27 6 2.4131 -4.0931 -1.4428 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 1.1770 -4.9299 1.5483 31 1 0.1246 -4.6768 0.1174 32 1 0.9982 -6.7282 -0.5727 33 1 2.4358 -6.5706 0.4747 34 1 2.3255 -10.0312 0.1433 35 1 3.4201 -11.5718 -1.3995 36 1 4.7196 -11.8971 -3.5303 37 1 5.7649 -10.9108 -5.5000 38 1 5.7056 -8.4835 -5.8751 39 1 4.5916 -6.9994 -4.2945 40 1 3.3499 -3.6339 -1.7582 41 1 1.6102 -3.8259 -2.1299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019303528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:12 Heat of formation + Delta-G solvation = 33.463790 kcal Electronic energy + Delta-G solvation = -24728.099944 eV Core-core repulsion = 21186.858510 eV Total energy + Delta-G solvation = -3541.241435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.20674 -40.65126 -38.75528 -38.34374 -35.96592 -34.04067 -33.33644 -32.16644 -31.30487 -30.64223 -29.11005 -26.63003 -25.46474 -24.49320 -24.05348 -23.39113 -21.70133 -20.90930 -19.40153 -19.03447 -18.32161 -17.86118 -17.52490 -17.02504 -16.75983 -16.45167 -15.87693 -15.55660 -15.33616 -14.98252 -14.86546 -14.68916 -14.55481 -14.21811 -14.01274 -13.77027 -13.65298 -13.18695 -13.13533 -12.89997 -12.79449 -12.50465 -12.40387 -12.31161 -12.09415 -11.77924 -11.62140 -11.19001 -11.04536 -11.01602 -10.40924 -10.14751 -9.74692 -9.11215 -9.03948 -7.98125 -5.28369 -0.97833 -0.11255 0.68927 1.47035 1.48740 1.56826 1.60203 1.78242 2.19105 2.54295 2.97972 3.07770 3.33549 3.55866 3.63095 3.68267 3.81380 3.88185 3.93437 4.04113 4.19182 4.28161 4.29064 4.39049 4.42547 4.48408 4.55918 4.73459 4.75032 4.85217 4.94575 5.02955 5.06201 5.12306 5.16020 5.25443 5.37542 5.40548 5.50507 5.54349 5.62073 5.89909 6.23524 6.40634 6.68755 7.00600 7.30885 8.01271 8.26726 9.24647 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.002905 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.205432 B = 9635.423928 C =10501.931593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.722 5.722 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.132 4.132 13 C 0.131 3.869 14 N -0.592 5.592 15 C 0.570 3.430 16 O -0.570 6.570 17 C 0.093 3.907 18 N -0.455 5.455 19 C 0.054 3.946 20 C -0.104 4.104 21 C -0.053 4.053 22 C -0.106 4.106 23 C -0.101 4.101 24 C -0.113 4.113 25 C -0.133 4.133 26 C -0.087 4.087 27 C 0.092 3.908 28 H 0.253 0.747 29 H 0.379 0.621 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.196 0.804 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.051 0.949 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.946 -29.451 -4.019 30.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.361 5.361 10 C 0.057 3.943 11 H 0.081 0.919 12 C -0.170 4.170 13 C 0.009 3.991 14 N -0.323 5.323 15 C 0.359 3.641 16 O -0.451 6.451 17 C -0.057 4.057 18 N -0.167 5.167 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.058 4.058 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.152 4.152 26 C -0.090 4.090 27 C -0.034 4.034 28 H 0.062 0.938 29 H 0.212 0.788 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.213 0.787 35 H 0.205 0.795 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.070 0.930 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.966 -28.605 -3.822 29.938 hybrid contribution 0.278 1.195 -0.871 1.505 sum 8.244 -27.410 -4.693 29.005 Atomic orbital electron populations 1.69803 1.06487 1.26243 1.58948 1.25540 0.96383 1.00994 1.03235 0.85180 0.77845 0.79627 0.77347 1.21689 1.21857 1.19419 1.19600 0.91436 0.85137 1.41791 0.90785 1.42421 1.05525 1.00348 1.87818 1.21435 0.95297 0.85770 0.91815 0.91922 1.22946 0.99151 0.92925 1.01989 1.22142 0.94941 0.95424 0.86587 1.48450 1.46752 1.07918 1.29165 1.17989 0.78896 0.85942 0.81301 1.90564 1.47335 1.74108 1.33046 1.20924 0.98954 0.92505 0.93278 1.67450 1.14961 1.15963 1.18335 1.22909 0.98358 0.86951 1.01062 1.22665 0.94243 1.03472 0.91993 1.18592 0.98674 0.91401 0.97131 1.21416 0.96686 1.01068 0.93197 1.21469 0.97786 0.94655 0.98043 1.21428 0.97939 0.94391 0.99381 1.22021 0.96813 1.02813 0.93584 1.18870 0.99567 0.94324 0.96218 1.23087 1.00205 0.78602 1.01488 0.93833 0.78830 0.88012 0.90827 0.90188 0.89022 0.78726 0.79486 0.80970 0.81963 0.83880 0.84069 0.93028 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.25 -13.84 9.98 84.04 0.84 -13.00 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -36.29 5.28 -316.37 -1.67 -37.96 16 10 C 0.17 6.74 3.69 46.38 0.17 6.91 16 11 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 12 C -0.13 -4.06 6.57 31.79 0.21 -3.85 16 13 C 0.13 3.72 5.42 86.73 0.47 4.19 16 14 N -0.59 -20.99 3.33 -815.09 -2.71 -23.70 16 15 C 0.57 20.89 7.81 86.82 0.68 21.57 16 16 O -0.57 -23.81 13.70 -3.84 -0.05 -23.86 16 17 C 0.09 2.80 6.77 42.43 0.29 3.09 16 18 N -0.46 -11.14 6.89 -184.95 -1.27 -12.42 16 19 C 0.05 0.86 11.06 84.30 0.93 1.79 16 20 C -0.10 -1.34 9.88 22.47 0.22 -1.12 16 21 C -0.05 -0.98 5.75 -21.29 -0.12 -1.10 16 22 C -0.11 -1.33 9.82 22.30 0.22 -1.11 16 23 C -0.10 -1.33 9.95 22.07 0.22 -1.11 16 24 C -0.11 -2.19 9.95 22.09 0.22 -1.97 16 25 C -0.13 -3.66 9.23 22.26 0.21 -3.45 16 26 C -0.09 -2.34 5.76 -21.14 -0.12 -2.46 16 27 C 0.09 3.76 6.60 86.85 0.57 4.33 16 28 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.38 20.12 7.71 -92.71 -0.71 19.40 16 30 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 31 H 0.07 2.32 8.00 -2.39 -0.02 2.30 16 32 H 0.08 2.10 7.71 -2.39 -0.02 2.08 16 33 H 0.09 2.37 7.27 -2.39 -0.02 2.35 16 34 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.14 4.72 4.96 -3.00 -0.01 4.71 16 40 H 0.05 2.28 8.04 -2.39 -0.02 2.27 16 41 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.23 341.40 2.42 -71.81 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.35 Total: 26.78 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.47 Total: 9.22 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.37 Total: -132.54 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -74.23 2.42 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019303528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.274 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds