Wall clock time and date at job start Fri Apr 10 2020 22:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99829 * 3 2 1 5 5 H 1.48507 * 109.47042 * 29.99374 * 3 2 1 6 6 H 1.48494 * 109.47282 * 149.99615 * 3 2 1 7 7 C 1.38811 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00587 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99619 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.91254 * 37.45032 * 10 9 7 12 12 C 1.55155 * 111.00220 * 161.35069 * 10 9 7 13 13 C 1.54336 * 103.01999 * 153.38061 * 12 10 9 14 14 N 1.47020 * 107.26462 * 338.14033 * 13 12 10 15 15 C 1.34781 * 125.64674 * 178.84535 * 14 13 12 16 16 O 1.21563 * 119.99486 * 185.52433 * 15 14 13 17 17 C 1.47768 * 120.00079 * 5.53251 * 15 14 13 18 18 C 1.40630 * 119.80308 * 172.87365 * 17 15 14 19 19 C 1.35698 * 120.91911 * 180.02562 * 18 17 15 20 20 C 1.40762 * 120.11127 * 359.95492 * 19 18 17 21 21 N 1.33653 * 120.82940 * 180.02562 * 20 19 18 22 22 C 1.31116 * 121.39703 * 180.02562 * 21 20 19 23 23 C 1.39322 * 121.76642 * 0.02562 * 22 21 20 24 24 C 1.36582 * 119.90313 * 359.97438 * 23 22 21 25 25 C 1.40887 * 118.15956 * 359.97438 * 24 23 22 26 26 C 1.38549 * 119.80360 * 352.89459 * 17 15 14 27 27 C 1.47420 * 108.70402 * 358.58457 * 14 13 12 28 28 H 0.96992 * 120.00351 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00355 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.71994 * 271.93737 * 12 10 9 31 31 H 1.08997 * 110.72056 * 35.21053 * 12 10 9 32 32 H 1.08995 * 109.99427 * 218.66371 * 13 12 10 33 33 H 1.09003 * 109.77914 * 97.49570 * 13 12 10 34 34 H 1.07993 * 119.54058 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.94312 * 179.97438 * 19 18 17 36 36 H 1.07994 * 119.12171 * 180.02562 * 22 21 20 37 37 H 1.07993 * 120.04688 * 180.02562 * 23 22 21 38 38 H 1.07995 * 120.91916 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.29541 * 359.97438 * 26 17 15 40 40 H 1.09001 * 110.36988 * 143.19483 * 27 14 13 41 41 H 1.09002 * 110.36756 * 265.41230 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0005 11 1 2.9528 -3.5895 0.6197 12 6 1.1478 -4.8246 0.4637 13 6 1.7801 -6.0526 -0.2249 14 7 2.5594 -5.5580 -1.3692 15 6 3.2829 -6.3187 -2.2145 16 8 3.9704 -5.7931 -3.0682 17 6 3.2403 -7.7916 -2.1035 18 6 3.8742 -8.5845 -3.0767 19 6 3.8489 -9.9390 -2.9972 20 6 3.1830 -10.5714 -1.9305 21 7 3.1494 -11.9043 -1.8379 22 6 2.5321 -12.5051 -0.8494 23 6 1.8808 -11.7884 0.1523 24 6 1.8758 -10.4230 0.1192 25 6 2.5412 -9.7812 -0.9440 26 6 2.5757 -8.3832 -1.0414 27 6 2.4133 -4.0929 -1.4429 28 1 -0.4850 0.8399 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 1.1774 -4.9299 1.5482 31 1 0.1249 -4.6769 0.1174 32 1 0.9987 -6.7282 -0.5728 33 1 2.4364 -6.5705 0.4745 34 1 4.3884 -8.1089 -3.8987 35 1 4.3406 -10.5326 -3.7536 36 1 2.5284 -13.5843 -0.8104 37 1 1.3813 -12.3118 0.9540 38 1 1.3758 -9.8511 0.8868 39 1 2.0895 -7.7728 -0.2949 40 1 3.3502 -3.6336 -1.7583 41 1 1.6104 -3.8257 -2.1300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019320805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:16 Heat of formation + Delta-G solvation = 63.847800 kcal Electronic energy + Delta-G solvation = -24499.213794 eV Core-core repulsion = 20959.289908 eV Total energy + Delta-G solvation = -3539.923885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24955 -39.92344 -37.60393 -36.76422 -34.43327 -33.75200 -31.85264 -30.88318 -30.42916 -29.80770 -27.56506 -25.43132 -24.29376 -23.59115 -23.17487 -22.02759 -20.47110 -19.90431 -18.58251 -17.61903 -17.29932 -16.95635 -16.26492 -16.08215 -15.32031 -14.79778 -14.63905 -14.47805 -14.31195 -14.21841 -13.68425 -13.51609 -13.41265 -13.21274 -13.06033 -12.57841 -12.37660 -12.36612 -11.81256 -11.75502 -11.24414 -11.13523 -10.91237 -10.85466 -10.74405 -10.39861 -10.09585 -9.95058 -9.79002 -9.70492 -9.10226 -9.06156 -8.58505 -8.45979 -7.13501 -5.88299 -3.19427 -0.05890 0.41062 1.61776 2.25553 3.03570 3.22794 3.39370 3.45295 3.46045 3.85061 3.94215 4.20992 4.34426 4.39913 4.49791 4.52897 4.69286 4.77049 4.84449 4.99867 5.01862 5.10890 5.18370 5.33756 5.43829 5.53417 5.55269 5.64264 5.69836 5.73999 5.82973 5.94940 6.02912 6.06967 6.15112 6.17965 6.27166 6.40970 6.48983 6.55986 6.80378 7.56301 7.62109 7.62598 8.22095 8.29341 9.41476 9.93369 10.28242 11.33655 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002709 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.769800 B =10334.875156 C =11105.961177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.143 4.143 13 C 0.091 3.909 14 N -0.606 5.606 15 C 0.565 3.435 16 O -0.537 6.537 17 C -0.118 4.118 18 C -0.051 4.051 19 C -0.104 4.104 20 C 0.140 3.860 21 N -0.479 5.479 22 C 0.136 3.864 23 C -0.182 4.182 24 C -0.047 4.047 25 C -0.112 4.112 26 C -0.096 4.096 27 C 0.081 3.919 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.173 0.827 40 H 0.075 0.925 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -24.940 1.652 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.182 4.182 13 C -0.032 4.032 14 N -0.339 5.339 15 C 0.354 3.646 16 O -0.416 6.416 17 C -0.121 4.121 18 C -0.072 4.072 19 C -0.122 4.122 20 C 0.019 3.981 21 N -0.187 5.187 22 C -0.036 4.036 23 C -0.202 4.202 24 C -0.073 4.073 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.190 0.810 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.093 -24.894 0.457 25.090 hybrid contribution -0.366 1.257 0.581 1.432 sum 2.727 -23.637 1.038 23.817 Atomic orbital electron populations 1.69649 1.05178 1.26004 1.56908 1.24770 0.95536 0.97886 1.02243 0.86169 0.78700 0.83504 0.77679 1.21511 1.21681 1.20606 1.19251 0.91164 0.83844 1.43768 0.90889 1.42298 1.05788 0.99351 1.87688 1.21311 0.94641 0.86107 0.91952 0.91640 1.22988 1.00536 0.94056 1.00572 1.22506 0.94712 0.97781 0.88161 1.48426 1.47552 1.09501 1.28403 1.17883 0.79648 0.85895 0.81166 1.90781 1.40822 1.74171 1.35804 1.20037 1.01401 0.93488 0.97177 1.20942 0.95668 0.92826 0.97733 1.20695 0.99912 0.94005 0.97607 1.19056 0.95670 0.89163 0.94245 1.68068 1.17487 1.09681 1.23463 1.23029 0.90986 1.00728 0.88881 1.21899 1.02255 0.94968 1.01108 1.21573 0.94770 0.95019 0.95961 1.18836 1.01060 0.94517 0.97011 1.23122 0.96166 0.93858 0.98247 1.23506 1.02255 0.76502 1.02135 0.93300 0.77810 0.89859 0.90146 0.90789 0.90674 0.83928 0.84187 0.82339 0.84311 0.83987 0.81045 0.90700 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.64 9.98 -15.06 -0.15 -6.79 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.65 5.28 -51.35 -0.27 -16.92 16 10 C 0.17 3.14 3.69 -65.78 -0.24 2.90 16 11 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 12 C -0.14 -1.92 6.57 -24.89 -0.16 -2.08 16 13 C 0.09 1.04 4.86 -3.06 -0.01 1.03 16 14 N -0.61 -9.29 3.33 -178.02 -0.59 -9.88 16 15 C 0.57 9.18 7.80 -12.36 -0.10 9.08 16 16 O -0.54 -10.61 16.56 5.31 0.09 -10.52 16 17 C -0.12 -1.55 5.87 -104.98 -0.62 -2.16 16 18 C -0.05 -0.62 9.49 -39.59 -0.38 -1.00 16 19 C -0.10 -1.16 9.95 -39.54 -0.39 -1.55 16 20 C 0.14 1.62 6.61 -84.78 -0.56 1.06 16 21 N -0.48 -5.25 10.33 -10.92 -0.11 -5.36 16 22 C 0.14 1.07 11.15 -17.45 -0.19 0.87 16 23 C -0.18 -1.19 10.03 -39.78 -0.40 -1.59 16 24 C -0.05 -0.36 9.89 -39.18 -0.39 -0.75 16 25 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 26 C -0.10 -1.02 8.37 -38.74 -0.32 -1.35 16 27 C 0.08 1.48 6.63 -2.53 -0.02 1.46 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.39 9.55 7.71 -40.82 -0.31 9.23 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.07 0.70 6.75 -51.93 -0.35 0.35 16 33 H 0.08 0.70 6.72 -51.93 -0.35 0.35 16 34 H 0.14 1.69 7.63 -52.49 -0.40 1.29 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.17 1.51 2.69 -60.69 -0.16 1.34 16 40 H 0.07 1.50 7.98 -51.93 -0.41 1.09 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -33.17 341.82 -9.59 -42.77 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.91 Total: 7.20 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.64 Total: -2.95 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.25 Total: -58.51 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.17 -9.59 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019320805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.614 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds