Wall clock time and date at job start Fri Apr 10 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99829 * 3 2 1 5 5 H 1.48507 * 109.47042 * 29.99374 * 3 2 1 6 6 H 1.48494 * 109.47282 * 149.99615 * 3 2 1 7 7 C 1.38811 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00587 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99619 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.91254 * 37.45032 * 10 9 7 12 12 C 1.55155 * 111.00220 * 161.35069 * 10 9 7 13 13 C 1.54336 * 103.01999 * 153.38061 * 12 10 9 14 14 N 1.47020 * 107.26462 * 338.14033 * 13 12 10 15 15 C 1.34781 * 125.64674 * 178.84535 * 14 13 12 16 16 O 1.21563 * 119.99486 * 185.52433 * 15 14 13 17 17 C 1.47768 * 120.00079 * 5.53251 * 15 14 13 18 18 C 1.40630 * 119.80308 * 172.87365 * 17 15 14 19 19 C 1.35698 * 120.91911 * 180.02562 * 18 17 15 20 20 C 1.40762 * 120.11127 * 359.95492 * 19 18 17 21 21 N 1.33653 * 120.82940 * 180.02562 * 20 19 18 22 22 C 1.31116 * 121.39703 * 180.02562 * 21 20 19 23 23 C 1.39322 * 121.76642 * 0.02562 * 22 21 20 24 24 C 1.36582 * 119.90313 * 359.97438 * 23 22 21 25 25 C 1.40887 * 118.15956 * 359.97438 * 24 23 22 26 26 C 1.38549 * 119.80360 * 352.89459 * 17 15 14 27 27 C 1.47420 * 108.70402 * 358.58457 * 14 13 12 28 28 H 0.96992 * 120.00351 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00355 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.71994 * 271.93737 * 12 10 9 31 31 H 1.08997 * 110.72056 * 35.21053 * 12 10 9 32 32 H 1.08995 * 109.99427 * 218.66371 * 13 12 10 33 33 H 1.09003 * 109.77914 * 97.49570 * 13 12 10 34 34 H 1.07993 * 119.54058 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.94312 * 179.97438 * 19 18 17 36 36 H 1.07994 * 119.12171 * 180.02562 * 22 21 20 37 37 H 1.07993 * 120.04688 * 180.02562 * 23 22 21 38 38 H 1.07995 * 120.91916 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.29541 * 359.97438 * 26 17 15 40 40 H 1.09001 * 110.36988 * 143.19483 * 27 14 13 41 41 H 1.09002 * 110.36756 * 265.41230 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0005 11 1 2.9528 -3.5895 0.6197 12 6 1.1478 -4.8246 0.4637 13 6 1.7801 -6.0526 -0.2249 14 7 2.5594 -5.5580 -1.3692 15 6 3.2829 -6.3187 -2.2145 16 8 3.9704 -5.7931 -3.0682 17 6 3.2403 -7.7916 -2.1035 18 6 3.8742 -8.5845 -3.0767 19 6 3.8489 -9.9390 -2.9972 20 6 3.1830 -10.5714 -1.9305 21 7 3.1494 -11.9043 -1.8379 22 6 2.5321 -12.5051 -0.8494 23 6 1.8808 -11.7884 0.1523 24 6 1.8758 -10.4230 0.1192 25 6 2.5412 -9.7812 -0.9440 26 6 2.5757 -8.3832 -1.0414 27 6 2.4133 -4.0929 -1.4429 28 1 -0.4850 0.8399 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 1.1774 -4.9299 1.5482 31 1 0.1249 -4.6769 0.1174 32 1 0.9987 -6.7282 -0.5728 33 1 2.4364 -6.5705 0.4745 34 1 4.3884 -8.1089 -3.8987 35 1 4.3406 -10.5326 -3.7536 36 1 2.5284 -13.5843 -0.8104 37 1 1.3813 -12.3118 0.9540 38 1 1.3758 -9.8511 0.8868 39 1 2.0895 -7.7728 -0.2949 40 1 3.3502 -3.6336 -1.7583 41 1 1.6104 -3.8257 -2.1300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019320805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:14 Heat of formation + Delta-G solvation = 41.840692 kcal Electronic energy + Delta-G solvation = -24500.168093 eV Core-core repulsion = 20959.289908 eV Total energy + Delta-G solvation = -3540.878185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.08585 -41.00273 -38.86660 -37.70135 -36.07935 -34.56887 -33.45997 -31.79126 -31.34368 -31.16254 -28.97484 -26.54970 -25.55216 -24.73789 -24.16024 -22.97525 -21.76613 -21.12011 -19.51425 -19.26160 -18.36468 -17.85129 -17.42585 -17.13597 -16.42758 -16.30151 -15.72711 -15.56725 -15.34943 -15.13759 -15.10769 -14.77794 -14.49879 -14.23998 -14.02698 -13.83570 -13.75797 -13.38867 -12.97597 -12.90231 -12.70169 -12.57568 -12.35407 -12.14029 -12.06725 -11.75355 -11.60112 -11.52100 -11.18135 -10.99458 -10.42329 -9.93914 -9.69574 -9.35291 -9.08761 -7.98665 -5.28221 -0.80554 -0.32977 0.89008 1.36667 1.46866 1.48631 1.56164 1.81736 2.23455 2.54274 3.08787 3.20941 3.32537 3.40936 3.47188 3.62625 3.75165 3.90133 3.99500 4.02023 4.05820 4.12334 4.18778 4.30729 4.34371 4.47752 4.53750 4.60308 4.73446 4.80833 4.86182 4.94589 4.95914 5.03808 5.12875 5.19890 5.26390 5.28035 5.35628 5.49286 5.51843 5.78506 6.23660 6.42079 6.91454 6.97956 7.31386 8.02590 8.26699 9.23874 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002709 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.769800 B =10334.875156 C =11105.961177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.722 5.722 10 C 0.165 3.835 11 H 0.064 0.936 12 C -0.129 4.129 13 C 0.089 3.911 14 N -0.606 5.606 15 C 0.562 3.438 16 O -0.588 6.588 17 C -0.144 4.144 18 C -0.064 4.064 19 C -0.108 4.108 20 C 0.123 3.877 21 N -0.514 5.514 22 C 0.139 3.861 23 C -0.173 4.173 24 C -0.046 4.046 25 C -0.128 4.128 26 C -0.072 4.072 27 C 0.091 3.909 28 H 0.253 0.747 29 H 0.379 0.621 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.190 0.810 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.196 0.804 40 H 0.045 0.955 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -28.052 4.312 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.361 5.361 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.167 4.167 13 C -0.032 4.032 14 N -0.338 5.338 15 C 0.353 3.647 16 O -0.470 6.470 17 C -0.147 4.147 18 C -0.085 4.085 19 C -0.126 4.126 20 C 0.002 3.998 21 N -0.223 5.223 22 C -0.033 4.033 23 C -0.192 4.192 24 C -0.072 4.072 25 C -0.130 4.130 26 C -0.090 4.090 27 C -0.035 4.035 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.207 0.793 37 H 0.196 0.804 38 H 0.196 0.804 39 H 0.212 0.788 40 H 0.063 0.937 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.272 -28.065 3.145 28.332 hybrid contribution -0.112 1.957 -0.194 1.969 sum 2.160 -26.109 2.951 26.364 Atomic orbital electron populations 1.69775 1.06383 1.26222 1.58949 1.25487 0.96345 1.00864 1.03309 0.85236 0.77910 0.79917 0.77272 1.21891 1.21867 1.19475 1.19573 0.91386 0.85227 1.41703 0.90916 1.42411 1.05562 1.00361 1.87778 1.21482 0.95484 0.85917 0.91711 0.91828 1.22929 0.99286 0.92113 1.02369 1.22858 0.95692 0.97444 0.87208 1.48417 1.47856 1.07999 1.29490 1.18430 0.78699 0.87270 0.80299 1.90741 1.43064 1.75318 1.37916 1.19766 1.04469 0.91148 0.99343 1.20864 0.96457 0.93331 0.97818 1.20778 1.00107 0.93521 0.98216 1.19257 0.95975 0.89976 0.94609 1.68096 1.19439 1.09379 1.25409 1.23748 0.89143 1.02453 0.87969 1.22356 1.00921 0.94757 1.01207 1.22027 0.93826 0.95837 0.95466 1.19055 1.01796 0.94230 0.97962 1.23287 0.94263 0.94340 0.97081 1.23067 0.99929 0.78876 1.01640 0.93842 0.78740 0.87149 0.90274 0.87643 0.87204 0.85075 0.83462 0.79291 0.80376 0.80437 0.78838 0.93676 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.10 13.06 21.65 0.28 -56.81 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.25 -13.33 9.98 84.03 0.84 -12.49 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.72 -34.16 5.28 -316.37 -1.67 -35.83 16 10 C 0.16 5.95 3.69 46.38 0.17 6.12 16 11 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 12 C -0.13 -3.10 6.57 31.79 0.21 -2.89 16 13 C 0.09 1.73 4.86 86.73 0.42 2.15 16 14 N -0.61 -18.31 3.33 -835.41 -2.78 -21.09 16 15 C 0.56 18.69 7.80 86.76 0.68 19.37 16 16 O -0.59 -24.79 16.56 -3.91 -0.06 -24.85 16 17 C -0.14 -3.75 5.87 -20.10 -0.12 -3.87 16 18 C -0.06 -1.64 9.49 22.27 0.21 -1.42 16 19 C -0.11 -2.44 9.95 22.30 0.22 -2.21 16 20 C 0.12 2.66 6.61 40.35 0.27 2.93 16 21 N -0.51 -10.19 10.33 -188.45 -1.95 -12.13 16 22 C 0.14 1.62 11.15 85.06 0.95 2.57 16 23 C -0.17 -1.31 10.03 22.14 0.22 -1.09 16 24 C -0.05 -0.46 9.89 22.53 0.22 -0.24 16 25 C -0.13 -2.27 5.74 -21.29 -0.12 -2.39 16 26 C -0.07 -1.33 8.37 22.82 0.19 -1.14 16 27 C 0.09 3.43 6.63 86.86 0.58 4.00 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.38 18.96 7.71 -92.71 -0.71 18.25 16 30 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 31 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 32 H 0.11 1.50 6.75 -2.39 -0.02 1.48 16 33 H 0.11 1.47 6.72 -2.39 -0.02 1.45 16 34 H 0.13 3.48 7.63 -2.91 -0.02 3.46 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 38 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.20 2.48 2.69 -10.62 -0.03 2.46 16 40 H 0.04 1.93 7.98 -2.39 -0.02 1.91 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.89 341.82 1.59 -75.29 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.34 Total: 21.66 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.40 Total: 6.11 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.11 Total: -125.87 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.89 1.59 -75.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019320805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.135 kcal (2) G-P(sol) polarization free energy of solvation -76.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds