Wall clock time and date at job start Fri Apr 10 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48499 * 109.46976 * 269.99917 * 3 2 1 5 5 H 1.48494 * 109.47211 * 29.99728 * 3 2 1 6 6 H 1.48498 * 109.47047 * 149.99788 * 3 2 1 7 7 C 1.38810 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99839 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99571 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.91597 * 37.45217 * 10 9 7 12 12 C 1.55164 * 111.00361 * 161.34961 * 10 9 7 13 13 C 1.54327 * 103.02203 * 153.37960 * 12 10 9 14 14 N 1.47021 * 107.26953 * 338.14745 * 13 12 10 15 15 C 1.34779 * 125.65262 * 178.84820 * 14 13 12 16 16 O 1.21556 * 119.99943 * 185.38318 * 15 14 13 17 17 C 1.47758 * 119.99790 * 5.38035 * 15 14 13 18 18 C 1.40605 * 120.26892 * 173.45051 * 17 15 14 19 19 N 1.30799 * 121.53323 * 180.32062 * 18 17 15 20 20 C 1.33821 * 121.72341 * 359.67247 * 19 18 17 21 21 C 1.40530 * 120.81892 * 180.02562 * 20 19 18 22 22 C 1.36129 * 119.81386 * 179.97438 * 21 20 19 23 23 C 1.39345 * 121.08798 * 359.97438 * 22 21 20 24 24 C 1.36137 * 120.83555 * 0.02797 * 23 22 21 25 25 C 1.40543 * 119.61728 * 359.97438 * 24 23 22 26 26 C 1.39015 * 120.26856 * 353.14629 * 17 15 14 27 27 C 1.47425 * 108.70072 * 358.58036 * 14 13 12 28 28 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00457 * 0.02562 * 9 7 2 30 30 H 1.09001 * 110.72258 * 271.94459 * 12 10 9 31 31 H 1.09005 * 110.71605 * 35.21131 * 12 10 9 32 32 H 1.09003 * 109.99602 * 218.66802 * 13 12 10 33 33 H 1.09004 * 109.77637 * 97.49843 * 13 12 10 34 34 H 1.07992 * 119.22617 * 359.97438 * 18 17 15 35 35 H 1.07994 * 120.09049 * 0.02562 * 21 20 19 36 36 H 1.07992 * 119.45407 * 180.02562 * 22 21 20 37 37 H 1.08004 * 119.58166 * 180.02562 * 23 22 21 38 38 H 1.07995 * 120.19315 * 179.97438 * 24 23 22 39 39 H 1.07999 * 121.01932 * 359.97438 * 26 17 15 40 40 H 1.08999 * 110.36899 * 143.19649 * 27 14 13 41 41 H 1.09000 * 110.36730 * 265.41323 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.6069 -3.2123 -0.6167 12 6 5.5790 -2.2665 -0.4606 13 6 6.3261 -3.4275 0.2291 14 7 5.5077 -3.8546 1.3733 15 6 5.8045 -4.8609 2.2194 16 8 5.0063 -5.1913 3.0745 17 6 7.1000 -5.5625 2.1072 18 6 7.4742 -6.5178 3.0687 19 7 8.6176 -7.1489 2.9970 20 6 9.4850 -6.9228 2.0034 21 6 10.7082 -7.6123 1.9447 22 6 11.5752 -7.3667 0.9244 23 6 11.2718 -6.4391 -0.0702 24 6 10.0971 -5.7514 -0.0480 25 6 9.1782 -5.9795 0.9906 26 6 7.9560 -5.2881 1.0468 27 6 4.3118 -2.9955 1.4460 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 0.0014 30 1 5.6558 -2.3455 -1.5450 31 1 5.9623 -1.3065 -0.1147 32 1 7.3018 -3.0883 0.5772 33 1 6.4467 -4.2553 -0.4698 34 1 6.8043 -6.7312 3.8884 35 1 10.9592 -8.3355 2.7064 36 1 12.5134 -7.9001 0.8848 37 1 11.9774 -6.2636 -0.8688 38 1 9.8727 -5.0346 -0.8240 39 1 7.6916 -4.5630 0.2914 40 1 3.4455 -3.5770 1.7614 41 1 4.4816 -2.1662 2.1326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019434270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:19 Heat of formation + Delta-G solvation = 42.986095 kcal Electronic energy + Delta-G solvation = -24549.421044 eV Core-core repulsion = 21008.592527 eV Total energy + Delta-G solvation = -3540.828516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18431 -40.88707 -38.91305 -37.82584 -36.26294 -34.75665 -33.51090 -31.92595 -31.37401 -31.11355 -29.36173 -26.49366 -25.51759 -24.75098 -23.90712 -23.08853 -21.88818 -21.07231 -19.84907 -19.47664 -18.32381 -17.90989 -17.54115 -17.08851 -16.48504 -16.42945 -15.77915 -15.52418 -15.38377 -15.19435 -15.10177 -14.79137 -14.54693 -14.44320 -14.34217 -13.84534 -13.81732 -13.37445 -12.95303 -12.75157 -12.70802 -12.48991 -12.42471 -12.10869 -12.05548 -11.85226 -11.69234 -11.52643 -11.36221 -11.03788 -10.52532 -9.96821 -9.73097 -9.37859 -9.29431 -8.03475 -5.40425 -0.82851 -0.42700 0.84336 1.39413 1.44645 1.46481 1.51257 1.75727 2.16620 2.48751 3.05252 3.10344 3.25523 3.33966 3.39431 3.58456 3.67393 3.74087 3.80508 3.92041 4.06014 4.13302 4.25718 4.28022 4.33881 4.42953 4.48669 4.50511 4.68288 4.71439 4.80887 4.92195 4.96058 5.07742 5.12892 5.17752 5.30590 5.36669 5.43138 5.49089 5.75360 5.87285 6.19812 6.36172 6.76434 6.93705 7.05632 7.77719 7.98268 9.17718 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.002843 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.864230 B = 9845.347584 C =10604.442843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.240 4.240 8 H 0.052 0.948 9 N -0.736 5.736 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.129 4.129 13 C 0.085 3.915 14 N -0.606 5.606 15 C 0.570 3.430 16 O -0.584 6.584 17 C -0.200 4.200 18 C 0.169 3.831 19 N -0.500 5.500 20 C 0.113 3.887 21 C -0.125 4.125 22 C -0.076 4.076 23 C -0.117 4.117 24 C -0.085 4.085 25 C -0.127 4.127 26 C -0.031 4.031 27 C 0.090 3.910 28 H 0.258 0.742 29 H 0.372 0.628 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.161 0.839 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.205 0.795 40 H 0.041 0.959 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.829 -11.195 -4.418 33.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.170 1.170 7 C -0.370 4.370 8 H 0.071 0.929 9 N -0.378 5.378 10 C 0.057 3.943 11 H 0.081 0.919 12 C -0.167 4.167 13 C -0.036 4.036 14 N -0.338 5.338 15 C 0.360 3.640 16 O -0.466 6.466 17 C -0.206 4.206 18 C -0.005 4.005 19 N -0.208 5.208 20 C -0.007 4.007 21 C -0.144 4.144 22 C -0.096 4.096 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.129 4.129 26 C -0.056 4.056 27 C -0.036 4.036 28 H 0.067 0.933 29 H 0.207 0.793 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.178 0.822 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.221 0.779 40 H 0.060 0.940 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 30.538 -12.137 -3.351 33.032 hybrid contribution -1.158 1.382 0.296 1.827 sum 29.380 -10.754 -3.055 31.435 Atomic orbital electron populations 1.69906 1.07453 1.26878 1.59099 1.25604 0.96134 1.01687 1.02106 0.85341 0.78660 0.78927 0.78384 1.19703 1.22889 1.17040 1.18993 0.82626 0.93379 1.42043 0.92950 1.42538 1.02382 1.03461 1.89442 1.21448 0.93062 0.87849 0.91928 0.91867 1.22987 0.92182 0.98777 1.02800 1.22902 0.95326 0.98222 0.87159 1.48382 1.24174 1.31728 1.29496 1.18111 0.86356 0.79030 0.80466 1.90764 1.51430 1.66621 1.37782 1.20675 0.96117 1.02991 1.00803 1.22983 0.92161 0.88980 0.96340 1.68045 1.03310 1.25502 1.23952 1.19579 0.95062 0.95204 0.90880 1.21028 0.91961 1.00590 1.00809 1.21440 0.99639 0.96265 0.92231 1.21444 0.97365 0.95276 0.99407 1.21487 0.92848 0.99607 0.96411 1.19119 0.96642 0.98915 0.98205 1.23807 0.90364 0.95497 0.95921 1.23033 0.86470 0.92629 1.01484 0.93279 0.79302 0.86586 0.89249 0.87312 0.87380 0.82221 0.84437 0.82051 0.81685 0.81409 0.77860 0.94025 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.58 13.97 21.65 0.30 -62.28 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.96 43.41 27.74 68.60 1.90 45.31 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -9.75 6.52 99.48 0.65 -9.10 16 7 C -0.24 -13.22 10.47 84.03 0.88 -12.34 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 N -0.74 -31.46 5.08 -316.35 -1.61 -33.07 16 10 C 0.17 5.62 3.69 46.39 0.17 5.79 16 11 H 0.06 2.27 8.13 -2.38 -0.02 2.25 16 12 C -0.13 -2.58 6.57 31.79 0.21 -2.37 16 13 C 0.08 1.41 4.87 86.73 0.42 1.83 16 14 N -0.61 -17.12 3.33 -821.69 -2.73 -19.86 16 15 C 0.57 18.23 7.81 86.76 0.68 18.91 16 16 O -0.58 -24.04 16.59 -3.89 -0.06 -24.10 16 17 C -0.20 -5.11 5.88 -20.00 -0.12 -5.23 16 18 C 0.17 4.63 10.73 85.42 0.92 5.54 16 19 N -0.50 -13.23 10.30 -187.68 -1.93 -15.17 16 20 C 0.11 2.45 6.61 40.27 0.27 2.72 16 21 C -0.13 -1.98 9.97 22.34 0.22 -1.76 16 22 C -0.08 -0.68 9.94 22.05 0.22 -0.46 16 23 C -0.12 -0.81 9.96 22.05 0.22 -0.59 16 24 C -0.09 -0.79 9.77 22.34 0.22 -0.57 16 25 C -0.13 -2.17 5.74 -21.29 -0.12 -2.29 16 26 C -0.03 -0.55 8.45 23.02 0.19 -0.35 16 27 C 0.09 3.20 6.63 86.86 0.58 3.78 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.37 14.75 5.57 -92.71 -0.52 14.23 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.66 8.00 -2.38 -0.02 1.64 16 32 H 0.11 1.18 6.75 -2.39 -0.02 1.16 16 33 H 0.11 1.20 6.73 -2.38 -0.02 1.19 16 34 H 0.16 4.47 7.64 -2.91 -0.02 4.44 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 37 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 39 H 0.21 2.17 2.86 -5.39 -0.02 2.15 16 40 H 0.04 1.77 7.99 -2.39 -0.02 1.75 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -81.51 338.87 1.78 -79.74 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.49 Total: 20.02 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.42 Total: 9.41 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -5.97 Total: -130.37 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.90 Total: 45.31 kcal Total: -81.51 1.78 -79.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019434270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.721 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds