Wall clock time and date at job start Fri Apr 10 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99880 * 2 1 4 4 H 1.48502 * 109.46962 * 269.99499 * 3 2 1 5 5 H 1.48494 * 109.47448 * 29.99936 * 3 2 1 6 6 H 1.48507 * 109.47257 * 149.99966 * 3 2 1 7 7 C 1.38817 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00135 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.91691 * 37.44630 * 10 9 7 12 12 C 1.55157 * 111.00707 * 161.35189 * 10 9 7 13 13 C 1.54335 * 103.01853 * 153.38139 * 12 10 9 14 14 N 1.47020 * 107.26862 * 338.13767 * 13 12 10 15 15 C 1.34774 * 125.64572 * 178.84993 * 14 13 12 16 16 O 1.21554 * 119.99844 * 185.10614 * 15 14 13 17 17 C 1.47876 * 120.00339 * 5.10458 * 15 14 13 18 18 C 1.40571 * 119.70704 * 41.24123 * 17 15 14 19 19 C 1.35820 * 120.73987 * 179.97438 * 18 17 15 20 20 C 1.40544 * 119.98118 * 0.03841 * 19 18 17 21 21 C 1.40811 * 121.13450 * 179.97438 * 20 19 18 22 22 C 1.36553 * 118.20223 * 180.02562 * 21 20 19 23 23 C 1.39420 * 119.93688 * 0.02562 * 22 21 20 24 24 N 1.31029 * 121.71279 * 0.02562 * 23 22 21 25 25 C 1.33742 * 121.34667 * 359.97438 * 24 23 22 26 26 C 1.38401 * 119.70962 * 221.25734 * 17 15 14 27 27 C 1.47430 * 108.70226 * 358.58679 * 14 13 12 28 28 H 0.96998 * 120.00448 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00076 * 0.02562 * 9 7 2 30 30 H 1.09004 * 110.71743 * 271.93858 * 12 10 9 31 31 H 1.09002 * 110.71967 * 35.21455 * 12 10 9 32 32 H 1.09003 * 109.98987 * 218.66361 * 13 12 10 33 33 H 1.09001 * 109.77949 * 97.49748 * 13 12 10 34 34 H 1.08004 * 119.63559 * 359.97438 * 18 17 15 35 35 H 1.08006 * 120.00698 * 180.31731 * 19 18 17 36 36 H 1.08001 * 120.90011 * 0.02562 * 21 20 19 37 37 H 1.07997 * 120.03564 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.14311 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.23480 * 0.04913 * 26 17 15 40 40 H 1.09002 * 110.36063 * 143.18955 * 27 14 13 41 41 H 1.08993 * 110.36625 * 265.40893 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9527 -3.5897 0.6196 12 6 1.1476 -4.8247 0.4637 13 6 1.7799 -6.0526 -0.2250 14 7 2.5592 -5.5580 -1.3693 15 6 3.2826 -6.3188 -2.2145 16 8 3.9641 -5.7935 -3.0731 17 6 3.2473 -7.7925 -2.0974 18 6 2.0266 -8.4422 -1.8451 19 6 1.9699 -9.7947 -1.7342 20 6 3.1406 -10.5602 -1.8710 21 6 3.1099 -11.9636 -1.7600 22 6 4.2828 -12.6481 -1.9028 23 6 5.4670 -11.9552 -2.1509 24 7 5.4923 -10.6491 -2.2527 25 6 4.3791 -9.9194 -2.1231 26 6 4.4165 -8.5199 -2.2368 27 6 2.4131 -4.0929 -1.4429 28 1 -0.4851 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 1.1772 -4.9300 1.5482 31 1 0.1247 -4.6770 0.1172 32 1 0.9984 -6.7282 -0.5729 33 1 2.4362 -6.5705 0.4744 34 1 1.1235 -7.8595 -1.7383 35 1 1.0248 -10.2820 -1.5453 36 1 2.1837 -12.4846 -1.5671 37 1 4.2935 -13.7250 -1.8228 38 1 6.3874 -12.5093 -2.2612 39 1 5.3515 -8.0148 -2.4295 40 1 3.3501 -3.6337 -1.7583 41 1 1.6103 -3.8257 -2.1300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019531512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:25 Heat of formation + Delta-G solvation = 44.795736 kcal Electronic energy + Delta-G solvation = -24312.936019 eV Core-core repulsion = 20772.185974 eV Total energy + Delta-G solvation = -3540.750045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19643 -39.84186 -37.54238 -36.82252 -34.18582 -33.81632 -31.82008 -30.84287 -30.36113 -29.65585 -27.68660 -25.26736 -24.30484 -23.70481 -22.59434 -22.38950 -20.37126 -19.84966 -18.49458 -17.60833 -17.26504 -17.03946 -16.34285 -15.92734 -15.26540 -14.83624 -14.74038 -14.59438 -14.29725 -14.20012 -13.82353 -13.46650 -13.36587 -13.17496 -12.86747 -12.57477 -12.41414 -12.11237 -11.94983 -11.75139 -11.50153 -11.09494 -10.90532 -10.86509 -10.73154 -10.32808 -10.05201 -9.93567 -9.82033 -9.74570 -9.10992 -9.03144 -8.61555 -8.38771 -7.10292 -5.85639 -3.16466 -0.01165 0.35774 1.60305 2.30093 2.94739 3.15341 3.41336 3.47129 3.48019 3.79007 3.96271 4.20138 4.33287 4.42532 4.50746 4.52858 4.67459 4.77966 4.83779 4.91469 5.11876 5.21247 5.25144 5.41575 5.47985 5.51106 5.56322 5.67849 5.70172 5.75857 5.90904 5.97322 6.03033 6.09575 6.15102 6.21356 6.33629 6.41484 6.48939 6.59102 6.85147 7.55909 7.64989 7.67851 8.23053 8.32122 9.44185 9.96581 10.31553 11.36362 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.035341 B = 0.002519 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.086775 B =11113.808908 C =11576.733281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.099 3.901 14 N -0.606 5.606 15 C 0.566 3.434 16 O -0.534 6.534 17 C -0.099 4.099 18 C -0.091 4.091 19 C -0.100 4.100 20 C -0.091 4.091 21 C -0.060 4.060 22 C -0.172 4.172 23 C 0.128 3.872 24 N -0.467 5.467 25 C 0.120 3.880 26 C -0.036 4.036 27 C 0.081 3.919 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -27.605 -0.775 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.024 4.024 14 N -0.340 5.340 15 C 0.354 3.646 16 O -0.411 6.411 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.086 4.086 22 C -0.192 4.192 23 C -0.045 4.045 24 N -0.175 5.175 25 C 0.000 4.000 26 C -0.055 4.055 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.163 0.837 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.480 -26.604 -1.410 27.015 hybrid contribution -0.727 0.352 0.073 0.811 sum 3.753 -26.252 -1.338 26.552 Atomic orbital electron populations 1.69653 1.05163 1.25951 1.57020 1.24770 0.95542 0.97870 1.02328 0.86166 0.78697 0.83519 0.77658 1.21534 1.21705 1.20616 1.19257 0.91165 0.83866 1.43615 0.90906 1.42300 1.05783 0.99375 1.87696 1.21309 0.94668 0.86097 0.91944 0.91706 1.22922 1.00327 0.94124 1.00529 1.22239 0.94779 0.97561 0.87800 1.48453 1.47672 1.09339 1.28492 1.17882 0.79526 0.85771 0.81412 1.90811 1.40915 1.74053 1.35369 1.19948 0.94224 0.93687 1.02540 1.21185 0.97479 0.94836 0.97446 1.20879 0.97243 0.93586 1.00199 1.18943 0.94660 0.94466 1.01268 1.21511 0.99127 0.92581 0.95339 1.21951 0.93687 1.01752 1.01828 1.23015 0.98135 0.89975 0.93387 1.68038 1.29143 1.07783 1.12522 1.18734 0.88539 0.93755 0.99011 1.21146 0.98527 0.90980 0.94879 1.23491 1.02149 0.76647 1.02092 0.93338 0.77831 0.90053 0.90333 0.91395 0.91523 0.84287 0.84604 0.84188 0.84382 0.82233 0.83668 0.90821 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.70 9.98 -15.06 -0.15 -6.85 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -16.97 5.28 -51.35 -0.27 -17.24 16 10 C 0.17 3.24 3.69 -65.78 -0.24 3.00 16 11 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 12 C -0.14 -2.00 6.57 -24.89 -0.16 -2.16 16 13 C 0.10 1.22 5.82 -3.06 -0.02 1.21 16 14 N -0.61 -9.56 3.32 -171.61 -0.57 -10.13 16 15 C 0.57 9.40 7.42 -12.32 -0.09 9.31 16 16 O -0.53 -10.91 17.15 5.32 0.09 -10.82 16 17 C -0.10 -1.32 5.45 -105.01 -0.57 -1.89 16 18 C -0.09 -0.94 8.34 -39.57 -0.33 -1.27 16 19 C -0.10 -0.86 9.74 -39.58 -0.39 -1.25 16 20 C -0.09 -0.89 5.75 -106.73 -0.61 -1.51 16 21 C -0.06 -0.42 9.88 -39.22 -0.39 -0.80 16 22 C -0.17 -1.08 10.03 -39.75 -0.40 -1.47 16 23 C 0.13 1.03 11.15 -17.45 -0.19 0.84 16 24 N -0.47 -5.47 10.34 -10.98 -0.11 -5.58 16 25 C 0.12 1.46 6.60 -84.87 -0.56 0.90 16 26 C -0.04 -0.48 9.59 -38.68 -0.37 -0.85 16 27 C 0.08 1.52 6.63 -2.52 -0.02 1.50 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.39 9.69 7.71 -40.82 -0.31 9.38 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 32 H 0.07 0.67 5.49 -51.93 -0.29 0.39 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.14 1.25 5.72 -52.48 -0.30 0.95 16 35 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.15 2.01 8.05 -52.49 -0.42 1.59 16 40 H 0.07 1.51 7.99 -51.93 -0.41 1.10 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -33.52 346.05 -9.62 -43.14 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.08 Total: 6.54 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -4.59 Total: -1.63 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.23 Total: -59.54 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.52 -9.62 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019531512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.934 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds