Wall clock time and date at job start Fri Apr 10 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99880 * 2 1 4 4 H 1.48502 * 109.46962 * 269.99499 * 3 2 1 5 5 H 1.48494 * 109.47448 * 29.99936 * 3 2 1 6 6 H 1.48507 * 109.47257 * 149.99966 * 3 2 1 7 7 C 1.38817 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00135 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.91691 * 37.44630 * 10 9 7 12 12 C 1.55157 * 111.00707 * 161.35189 * 10 9 7 13 13 C 1.54335 * 103.01853 * 153.38139 * 12 10 9 14 14 N 1.47020 * 107.26862 * 338.13767 * 13 12 10 15 15 C 1.34774 * 125.64572 * 178.84993 * 14 13 12 16 16 O 1.21554 * 119.99844 * 185.10614 * 15 14 13 17 17 C 1.47876 * 120.00339 * 5.10458 * 15 14 13 18 18 C 1.40571 * 119.70704 * 41.24123 * 17 15 14 19 19 C 1.35820 * 120.73987 * 179.97438 * 18 17 15 20 20 C 1.40544 * 119.98118 * 0.03841 * 19 18 17 21 21 C 1.40811 * 121.13450 * 179.97438 * 20 19 18 22 22 C 1.36553 * 118.20223 * 180.02562 * 21 20 19 23 23 C 1.39420 * 119.93688 * 0.02562 * 22 21 20 24 24 N 1.31029 * 121.71279 * 0.02562 * 23 22 21 25 25 C 1.33742 * 121.34667 * 359.97438 * 24 23 22 26 26 C 1.38401 * 119.70962 * 221.25734 * 17 15 14 27 27 C 1.47430 * 108.70226 * 358.58679 * 14 13 12 28 28 H 0.96998 * 120.00448 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00076 * 0.02562 * 9 7 2 30 30 H 1.09004 * 110.71743 * 271.93858 * 12 10 9 31 31 H 1.09002 * 110.71967 * 35.21455 * 12 10 9 32 32 H 1.09003 * 109.98987 * 218.66361 * 13 12 10 33 33 H 1.09001 * 109.77949 * 97.49748 * 13 12 10 34 34 H 1.08004 * 119.63559 * 359.97438 * 18 17 15 35 35 H 1.08006 * 120.00698 * 180.31731 * 19 18 17 36 36 H 1.08001 * 120.90011 * 0.02562 * 21 20 19 37 37 H 1.07997 * 120.03564 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.14311 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.23480 * 0.04913 * 26 17 15 40 40 H 1.09002 * 110.36063 * 143.18955 * 27 14 13 41 41 H 1.08993 * 110.36625 * 265.40893 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9527 -3.5897 0.6196 12 6 1.1476 -4.8247 0.4637 13 6 1.7799 -6.0526 -0.2250 14 7 2.5592 -5.5580 -1.3693 15 6 3.2826 -6.3188 -2.2145 16 8 3.9641 -5.7935 -3.0731 17 6 3.2473 -7.7925 -2.0974 18 6 2.0266 -8.4422 -1.8451 19 6 1.9699 -9.7947 -1.7342 20 6 3.1406 -10.5602 -1.8710 21 6 3.1099 -11.9636 -1.7600 22 6 4.2828 -12.6481 -1.9028 23 6 5.4670 -11.9552 -2.1509 24 7 5.4923 -10.6491 -2.2527 25 6 4.3791 -9.9194 -2.1231 26 6 4.4165 -8.5199 -2.2368 27 6 2.4131 -4.0929 -1.4429 28 1 -0.4851 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 1.1772 -4.9300 1.5482 31 1 0.1247 -4.6770 0.1172 32 1 0.9984 -6.7282 -0.5729 33 1 2.4362 -6.5705 0.4744 34 1 1.1235 -7.8595 -1.7383 35 1 1.0248 -10.2820 -1.5453 36 1 2.1837 -12.4846 -1.5671 37 1 4.2935 -13.7250 -1.8228 38 1 6.3874 -12.5093 -2.2612 39 1 5.3515 -8.0148 -2.4295 40 1 3.3501 -3.6337 -1.7583 41 1 1.6103 -3.8257 -2.1300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019531512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:25 Heat of formation + Delta-G solvation = 22.307068 kcal Electronic energy + Delta-G solvation = -24313.911201 eV Core-core repulsion = 20772.185974 eV Total energy + Delta-G solvation = -3541.725226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.99457 -41.01423 -38.85430 -37.75898 -35.98619 -34.48785 -33.46917 -31.86261 -31.18179 -30.99767 -29.16747 -26.53985 -25.31260 -24.97129 -23.80416 -23.14590 -21.77193 -21.03680 -19.55888 -19.20066 -18.25455 -17.94280 -17.43528 -17.25633 -16.50704 -16.24863 -15.69239 -15.53066 -15.38319 -15.29828 -15.02363 -14.82668 -14.64958 -14.13985 -13.93544 -13.87115 -13.77464 -13.16650 -13.03615 -12.90294 -12.78313 -12.61723 -12.41693 -12.34474 -12.09980 -11.79434 -11.57620 -11.55549 -11.21512 -11.01193 -10.48210 -9.90933 -9.70443 -9.33742 -9.09845 -7.99389 -5.29094 -0.74088 -0.34799 0.88283 1.39407 1.46130 1.47790 1.55522 1.76601 2.08530 2.53429 3.06112 3.17490 3.32641 3.44103 3.55841 3.61478 3.79632 3.84273 3.99198 4.02117 4.05762 4.07648 4.25371 4.28887 4.38536 4.53289 4.57821 4.65664 4.71047 4.81359 4.87333 4.92084 4.98031 5.11007 5.12017 5.18286 5.24082 5.32063 5.34785 5.50127 5.52495 5.78611 6.22801 6.40521 6.91792 6.92654 7.30473 8.01082 8.26231 9.23069 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.035341 B = 0.002519 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.086775 B =11113.808908 C =11576.733281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.165 3.835 11 H 0.059 0.941 12 C -0.127 4.127 13 C 0.102 3.898 14 N -0.604 5.604 15 C 0.563 3.437 16 O -0.588 6.588 17 C -0.106 4.106 18 C -0.104 4.104 19 C -0.075 4.075 20 C -0.103 4.103 21 C -0.054 4.054 22 C -0.164 4.164 23 C 0.127 3.873 24 N -0.515 5.515 25 C 0.098 3.902 26 C -0.060 4.060 27 C 0.091 3.909 28 H 0.253 0.747 29 H 0.380 0.620 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.118 0.882 40 H 0.043 0.957 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -31.859 0.432 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.361 5.361 10 C 0.054 3.946 11 H 0.077 0.923 12 C -0.165 4.165 13 C -0.020 4.020 14 N -0.336 5.336 15 C 0.353 3.647 16 O -0.469 6.469 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.106 4.106 21 C -0.080 4.080 22 C -0.183 4.183 23 C -0.045 4.045 24 N -0.224 5.224 25 C -0.022 4.022 26 C -0.080 4.080 27 C -0.035 4.035 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.198 0.802 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.203 0.797 39 H 0.136 0.864 40 H 0.061 0.939 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.208 -30.911 -0.175 31.077 hybrid contribution -0.215 1.422 -0.326 1.474 sum 2.993 -29.489 -0.501 29.645 Atomic orbital electron populations 1.69779 1.06345 1.26247 1.58854 1.25496 0.96386 1.00861 1.03237 0.85221 0.77852 0.79849 0.77317 1.21778 1.21749 1.19613 1.19563 0.91338 0.85259 1.41867 0.91076 1.42395 1.05558 1.00290 1.87816 1.21451 0.95341 0.85977 0.91791 0.92322 1.22864 0.99376 0.92262 1.01992 1.22491 0.95628 0.97136 0.86728 1.48453 1.47895 1.07864 1.29360 1.18521 0.78384 0.87394 0.80437 1.90767 1.43168 1.75382 1.37605 1.19670 0.95796 0.91041 1.04588 1.21269 0.96333 0.95913 0.98684 1.21331 0.98432 0.92625 0.96915 1.19271 0.93919 0.96235 1.01137 1.22008 1.01087 0.91145 0.93739 1.22408 0.92527 1.03702 0.99699 1.23678 1.00389 0.89064 0.91407 1.68007 1.29788 1.09702 1.14914 1.18786 0.90132 0.93122 1.00123 1.21024 0.97730 0.92301 0.96897 1.23063 0.99947 0.78951 1.01535 0.93801 0.78667 0.87944 0.89979 0.87728 0.89496 0.82727 0.80192 0.80124 0.80322 0.79655 0.86402 0.93871 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.62 13.06 21.65 0.28 -57.33 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.25 -13.70 9.98 84.03 0.84 -12.86 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -35.12 5.28 -316.37 -1.67 -36.79 16 10 C 0.17 6.31 3.69 46.39 0.17 6.48 16 11 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 12 C -0.13 -3.38 6.57 31.79 0.21 -3.17 16 13 C 0.10 2.28 5.82 86.73 0.50 2.78 16 14 N -0.60 -19.32 3.32 -815.12 -2.71 -22.03 16 15 C 0.56 19.63 7.42 86.80 0.64 20.27 16 16 O -0.59 -26.09 17.15 -3.88 -0.07 -26.16 16 17 C -0.11 -2.87 5.45 -20.12 -0.11 -2.98 16 18 C -0.10 -1.89 8.34 22.28 0.19 -1.71 16 19 C -0.07 -0.97 9.74 22.27 0.22 -0.76 16 20 C -0.10 -1.70 5.75 -21.23 -0.12 -1.82 16 21 C -0.05 -0.48 9.88 22.51 0.22 -0.26 16 22 C -0.16 -1.28 10.03 22.16 0.22 -1.06 16 23 C 0.13 1.74 11.15 85.10 0.95 2.69 16 24 N -0.52 -11.96 10.34 -188.65 -1.95 -13.91 16 25 C 0.10 2.36 6.60 40.25 0.27 2.63 16 26 C -0.06 -1.70 9.59 22.85 0.22 -1.48 16 27 C 0.09 3.57 6.63 86.86 0.58 4.14 16 28 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.38 19.40 7.71 -92.70 -0.71 18.68 16 30 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.08 2.18 8.00 -2.39 -0.02 2.16 16 32 H 0.10 1.66 5.49 -2.39 -0.01 1.65 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.16 2.22 5.72 -2.91 -0.02 2.20 16 35 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.18 0.13 8.06 -2.91 -0.02 0.10 16 37 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 38 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.12 3.78 8.05 -2.91 -0.02 3.76 16 40 H 0.04 1.91 7.99 -2.39 -0.02 1.90 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -79.31 346.05 1.72 -77.58 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.35 Total: 20.73 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.46 Total: 9.57 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -6.05 Total: -130.06 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.07 Total: -26.16 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -79.31 1.72 -77.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019531512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.889 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds