Wall clock time and date at job start Fri Apr 10 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47102 * 240.00321 * 3 2 1 5 5 H 1.48502 * 109.46719 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46916 * 119.99537 * 3 2 1 7 7 C 1.38815 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99581 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99918 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.91692 * 37.44879 * 10 9 7 12 12 C 1.55161 * 111.00357 * 161.35230 * 10 9 7 13 13 C 1.54330 * 103.02018 * 153.37927 * 12 10 9 14 14 N 1.47016 * 107.26652 * 338.14180 * 13 12 10 15 15 C 1.34776 * 125.64531 * 178.84854 * 14 13 12 16 16 O 1.21599 * 119.99976 * 184.83816 * 15 14 13 17 17 C 1.47562 * 120.00349 * 4.84056 * 15 14 13 18 18 C 1.38704 * 120.43506 * 46.49217 * 17 15 14 19 19 C 1.39000 * 120.75187 * 180.23563 * 18 17 15 20 20 C 1.36341 * 121.19200 * 359.47464 * 19 18 17 21 21 C 1.40352 * 119.92847 * 0.52595 * 20 19 18 22 22 C 1.40690 * 122.10685 * 179.76316 * 21 20 19 23 23 C 1.36265 * 118.66678 * 179.97438 * 22 21 20 24 24 N 1.32517 * 121.83811 * 0.02562 * 23 22 21 25 25 C 1.31307 * 122.72238 * 359.95299 * 24 23 22 26 26 C 1.40141 * 119.91888 * 0.04403 * 25 24 23 27 27 C 1.47424 * 108.70658 * 358.58524 * 14 13 12 28 28 H 0.96998 * 120.00417 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99432 * 0.02562 * 9 7 2 30 30 H 1.09000 * 110.71535 * 271.93920 * 12 10 9 31 31 H 1.09001 * 110.71709 * 35.20762 * 12 10 9 32 32 H 1.09002 * 109.99204 * 218.66477 * 13 12 10 33 33 H 1.09000 * 109.77722 * 97.49889 * 13 12 10 34 34 H 1.07997 * 119.62111 * 359.96607 * 18 17 15 35 35 H 1.07997 * 119.40203 * 179.72617 * 19 18 17 36 36 H 1.07999 * 120.03775 * 180.23549 * 20 19 18 37 37 H 1.07991 * 120.66522 * 359.97438 * 22 21 20 38 38 H 1.07994 * 119.08009 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.03892 * 180.02562 * 25 24 23 40 40 H 1.08994 * 110.37078 * 143.19388 * 27 14 13 41 41 H 1.08996 * 110.36333 * 265.41223 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9529 -3.5895 0.6186 12 6 1.1478 -4.8246 0.4626 13 6 1.7801 -6.0525 -0.2260 14 7 2.5595 -5.5579 -1.3703 15 6 3.2829 -6.3187 -2.2155 16 8 3.9610 -5.7934 -3.0774 17 6 3.2523 -7.7890 -2.0949 18 6 2.0454 -8.4571 -1.9500 19 6 2.0093 -9.8416 -1.8310 20 6 3.1528 -10.5832 -1.8636 21 6 4.3958 -9.9476 -2.0086 22 6 5.6042 -10.6673 -2.0430 23 6 6.7712 -9.9787 -2.1870 24 7 6.7951 -8.6581 -2.2940 25 6 5.7064 -7.9243 -2.2703 26 6 4.4540 -8.5362 -2.1260 27 6 2.4134 -4.0928 -1.4439 28 1 -0.4851 0.8400 -0.0004 29 1 0.3558 -2.3880 -0.0005 30 1 1.1775 -4.9299 1.5471 31 1 0.1249 -4.6769 0.1163 32 1 0.9987 -6.7282 -0.5740 33 1 2.4364 -6.5704 0.4734 34 1 1.1237 -7.8949 -1.9250 35 1 1.0578 -10.3390 -1.7147 36 1 3.1028 -11.6582 -1.7733 37 1 5.6068 -11.7438 -1.9570 38 1 7.7027 -10.5244 -2.2138 39 1 5.7762 -6.8504 -2.3616 40 1 3.3502 -3.6335 -1.7593 41 1 1.6106 -3.8257 -2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019591793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:29 Heat of formation + Delta-G solvation = 43.473903 kcal Electronic energy + Delta-G solvation = -24743.938708 eV Core-core repulsion = 21203.131345 eV Total energy + Delta-G solvation = -3540.807364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27639 -39.66657 -37.55382 -37.24190 -34.22784 -33.22109 -31.64823 -31.49207 -30.07032 -29.66238 -27.56248 -25.12079 -24.19272 -23.81693 -23.17285 -22.26247 -20.25163 -19.54150 -18.35856 -17.70541 -17.17536 -17.04723 -16.46326 -15.86794 -15.58575 -14.98056 -14.59573 -14.49615 -14.32599 -14.12791 -13.87152 -13.51433 -13.21469 -13.14736 -12.76857 -12.54469 -12.46175 -12.23997 -12.07725 -11.75819 -11.56088 -11.12208 -10.87434 -10.75078 -10.46388 -10.36476 -10.08490 -9.90586 -9.78167 -9.64276 -9.42248 -9.04409 -8.49864 -8.31527 -7.11775 -5.86529 -3.17590 -0.08465 0.60711 1.43503 2.53870 2.85869 3.08773 3.41505 3.46037 3.47094 3.82135 4.17020 4.24254 4.38781 4.47107 4.52583 4.53208 4.66663 4.78894 4.86574 4.98486 5.09844 5.20152 5.34474 5.38708 5.45492 5.46665 5.58125 5.68087 5.70118 5.76211 5.88594 5.91872 6.02724 6.07617 6.18630 6.30429 6.32523 6.43762 6.46745 6.55314 6.82568 7.61096 7.63534 7.78071 8.14905 8.31084 9.43207 9.95313 10.30190 11.35359 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002975 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.345199 B = 9410.000957 C =10188.078151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.100 3.900 14 N -0.604 5.604 15 C 0.566 3.434 16 O -0.532 6.532 17 C -0.082 4.082 18 C -0.087 4.087 19 C -0.100 4.100 20 C -0.097 4.097 21 C -0.026 4.026 22 C -0.161 4.161 23 C 0.078 3.922 24 N -0.487 5.487 25 C 0.159 3.841 26 C -0.082 4.082 27 C 0.081 3.919 28 H 0.258 0.742 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.074 0.926 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -24.947 -1.054 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.023 4.023 14 N -0.337 5.337 15 C 0.354 3.646 16 O -0.410 6.410 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.031 4.031 22 C -0.181 4.181 23 C -0.065 4.065 24 N -0.195 5.195 25 C -0.012 4.012 26 C -0.084 4.084 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.397 -24.230 -1.620 24.877 hybrid contribution -0.818 0.373 -0.007 0.899 sum 4.579 -23.857 -1.626 24.347 Atomic orbital electron populations 1.69643 1.05177 1.26100 1.56874 1.24768 0.95528 0.97867 1.02235 0.86245 0.78578 0.83201 0.78035 1.21026 1.21626 1.21101 1.19215 0.91148 0.83870 1.43854 0.90932 1.42288 1.05776 0.99352 1.87686 1.21308 0.94685 0.86112 0.91913 0.91679 1.22919 1.00342 0.94070 1.00550 1.22184 0.94751 0.97613 0.87746 1.48490 1.47420 1.09420 1.28335 1.17775 0.79676 0.85635 0.81534 1.90818 1.41142 1.74019 1.35062 1.19955 0.93444 0.93363 1.01999 1.21491 0.97336 0.94754 0.96946 1.20920 0.98955 0.93493 0.98543 1.21103 0.91174 1.00220 0.99056 1.18118 0.94584 0.92139 0.98305 1.21887 0.92369 1.00980 1.02814 1.22289 0.98107 0.90133 0.96014 1.67556 1.32091 1.07477 1.12409 1.23548 0.86203 1.01004 0.90434 1.18770 0.94539 0.93154 1.01983 1.23520 1.02245 0.76467 1.02183 0.93265 0.77821 0.90023 0.90311 0.91520 0.91534 0.84507 0.84773 0.84753 0.84321 0.82914 0.81050 0.90704 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.69 9.98 -15.06 -0.15 -6.84 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.75 5.28 -51.35 -0.27 -17.02 16 10 C 0.17 3.18 3.69 -65.78 -0.24 2.94 16 11 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 12 C -0.14 -1.96 6.57 -24.89 -0.16 -2.12 16 13 C 0.10 1.20 5.95 -3.06 -0.02 1.19 16 14 N -0.60 -9.17 3.33 -171.74 -0.57 -9.74 16 15 C 0.57 8.97 6.89 -12.46 -0.09 8.88 16 16 O -0.53 -10.22 15.48 5.28 0.08 -10.14 16 17 C -0.08 -1.06 5.38 -104.67 -0.56 -1.63 16 18 C -0.09 -0.85 8.41 -39.13 -0.33 -1.18 16 19 C -0.10 -0.76 9.93 -39.98 -0.40 -1.16 16 20 C -0.10 -0.77 9.79 -39.47 -0.39 -1.15 16 21 C -0.03 -0.27 5.74 -106.84 -0.61 -0.89 16 22 C -0.16 -1.43 9.88 -39.37 -0.39 -1.82 16 23 C 0.08 0.80 11.07 -17.97 -0.20 0.60 16 24 N -0.49 -6.60 10.30 -13.22 -0.14 -6.73 16 25 C 0.16 2.25 10.44 -17.06 -0.18 2.07 16 26 C -0.08 -1.06 5.76 -106.59 -0.61 -1.67 16 27 C 0.08 1.46 6.62 -2.53 -0.02 1.45 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.39 9.60 7.71 -40.82 -0.31 9.28 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.11 8.00 -51.93 -0.42 0.69 16 32 H 0.07 0.64 5.86 -51.93 -0.30 0.34 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 1.17 6.30 -52.49 -0.33 0.84 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.17 2.62 6.22 -52.49 -0.33 2.30 16 40 H 0.07 1.49 7.99 -51.93 -0.41 1.07 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -32.41 342.92 -9.50 -41.91 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.03 Total: 7.67 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.44 Total: -1.63 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.25 Total: -59.94 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.41 -9.50 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019591793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.385 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds