Wall clock time and date at job start Fri Apr 10 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00211 * 2 1 4 4 H 1.48507 * 109.47194 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47487 * 29.99630 * 3 2 1 6 6 H 1.48497 * 109.47474 * 149.99745 * 3 2 1 7 7 C 1.38816 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99998 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99833 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00051 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.91407 * 37.45289 * 10 9 7 12 12 C 1.55156 * 111.00311 * 161.35541 * 10 9 7 13 13 C 1.54337 * 103.01951 * 153.38297 * 12 10 9 14 14 N 1.47029 * 107.26336 * 338.13785 * 13 12 10 15 15 C 1.34779 * 125.64399 * 178.85060 * 14 13 12 16 16 O 1.21549 * 119.99673 * 185.53473 * 15 14 13 17 17 C 1.47889 * 120.00038 * 5.53379 * 15 14 13 18 18 C 1.40601 * 119.72831 * 172.91589 * 17 15 14 19 19 C 1.35839 * 120.95313 * 179.97438 * 18 17 15 20 20 C 1.40498 * 119.88186 * 0.04231 * 19 18 17 21 21 C 1.40480 * 121.84099 * 179.97438 * 20 19 18 22 22 N 1.31212 * 119.94199 * 179.97438 * 21 20 19 23 23 C 1.32564 * 122.79952 * 359.72805 * 22 21 20 24 24 C 1.36213 * 121.84606 * 0.54945 * 23 22 21 25 25 C 1.40757 * 118.67805 * 359.47155 * 24 23 22 26 26 C 1.38525 * 119.73157 * 352.89147 * 17 15 14 27 27 C 1.47420 * 108.70584 * 358.58782 * 14 13 12 28 28 H 0.97007 * 119.99864 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99849 * 0.02562 * 9 7 2 30 30 H 1.09005 * 110.71771 * 271.93710 * 12 10 9 31 31 H 1.08995 * 110.72005 * 35.21408 * 12 10 9 32 32 H 1.08996 * 109.99020 * 218.66484 * 13 12 10 33 33 H 1.08993 * 109.78092 * 97.49332 * 13 12 10 34 34 H 1.08000 * 119.52261 * 359.97438 * 18 17 15 35 35 H 1.08002 * 120.06012 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.03332 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.07584 * 180.29899 * 23 22 21 38 38 H 1.08001 * 120.66280 * 179.75034 * 24 23 22 39 39 H 1.07997 * 120.36514 * 359.97438 * 26 17 15 40 40 H 1.08995 * 110.37164 * 143.19326 * 27 14 13 41 41 H 1.09004 * 110.36524 * 265.40902 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.6063 -3.2122 -0.6188 12 6 5.5785 -2.2665 -0.4637 13 6 6.3260 -3.4280 0.2249 14 7 5.5084 -3.8554 1.3696 15 6 5.8057 -4.8622 2.2150 16 8 5.0071 -5.1947 3.0688 17 6 7.1037 -5.5622 2.1036 18 6 7.4717 -6.5076 3.0771 19 6 8.6576 -7.1655 2.9989 20 6 9.5351 -6.9026 1.9336 21 6 10.7715 -7.5584 1.8127 22 7 11.5621 -7.2844 0.8020 23 6 11.2474 -6.4039 -0.1377 24 6 10.0752 -5.7107 -0.1095 25 6 9.1739 -5.9503 0.9447 26 6 7.9466 -5.2816 1.0408 27 6 4.3126 -2.9964 1.4435 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3623 -0.0004 30 1 5.6545 -2.3451 -1.5482 31 1 5.9621 -1.3068 -0.1176 32 1 7.3019 -3.0890 0.5724 33 1 6.4461 -4.2554 -0.4743 34 1 6.8019 -6.7137 3.8988 35 1 8.9260 -7.8886 3.7549 36 1 11.0707 -8.2881 2.5505 37 1 11.9417 -6.2284 -0.9462 38 1 9.8400 -4.9947 -0.8832 39 1 7.6607 -4.5555 0.2942 40 1 3.4465 -3.5779 1.7593 41 1 4.4829 -2.1674 2.1305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019610512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:36 Heat of formation + Delta-G solvation = 67.246800 kcal Electronic energy + Delta-G solvation = -24545.976532 eV Core-core repulsion = 21006.200039 eV Total energy + Delta-G solvation = -3539.776493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -41.31258 -40.02077 -37.79638 -37.04311 -34.56964 -33.37551 -32.05584 -31.38072 -30.14020 -30.12419 -27.93630 -25.60821 -24.24206 -23.48589 -23.18358 -22.09540 -20.62212 -19.98324 -18.39913 -17.88424 -17.44264 -17.15211 -16.30992 -16.10907 -15.52477 -15.11899 -14.82473 -14.47168 -14.26327 -14.07519 -13.97957 -13.80349 -13.47095 -13.10304 -13.01126 -12.67948 -12.61567 -12.57005 -12.17305 -11.91321 -11.41283 -11.24340 -10.91774 -10.79651 -10.60696 -10.50570 -10.15368 -10.05145 -9.79312 -9.69651 -9.41377 -9.11534 -8.57184 -8.45894 -7.45394 -5.87815 -3.26885 -0.13161 0.38972 1.49681 2.30213 2.92479 3.18427 3.29249 3.31153 3.38489 3.75420 4.01559 4.11316 4.21083 4.41966 4.47650 4.48408 4.56084 4.69702 4.78229 4.87842 4.93581 5.01471 5.17306 5.20009 5.30981 5.33316 5.43048 5.50981 5.59546 5.68005 5.71273 5.77154 5.91396 5.97105 6.00070 6.12607 6.22966 6.29212 6.39864 6.45803 6.65974 7.51700 7.58968 7.85723 8.12357 8.30310 9.06325 9.77914 9.94961 11.29712 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.002848 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.206160 B = 9829.774363 C =10605.722515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.075 0.925 12 C -0.147 4.147 13 C 0.091 3.909 14 N -0.606 5.606 15 C 0.563 3.437 16 O -0.533 6.533 17 C -0.098 4.098 18 C -0.071 4.071 19 C -0.096 4.096 20 C -0.100 4.100 21 C 0.143 3.857 22 N -0.486 5.486 23 C 0.070 3.930 24 C -0.146 4.146 25 C -0.033 4.033 26 C -0.114 4.114 27 C 0.081 3.919 28 H 0.261 0.739 29 H 0.365 0.635 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.080 0.920 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.591 -12.642 0.639 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.185 4.185 13 C -0.032 4.032 14 N -0.339 5.339 15 C 0.352 3.648 16 O -0.411 6.411 17 C -0.102 4.102 18 C -0.089 4.089 19 C -0.116 4.116 20 C -0.102 4.102 21 C -0.029 4.029 22 N -0.194 5.194 23 C -0.072 4.072 24 C -0.165 4.165 25 C -0.038 4.038 26 C -0.131 4.131 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.171 0.829 38 H 0.159 0.841 39 H 0.190 0.810 40 H 0.098 0.902 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.708 -13.244 0.919 27.172 hybrid contribution -0.232 1.692 0.158 1.715 sum 23.476 -11.552 1.078 26.186 Atomic orbital electron populations 1.69703 1.05154 1.26071 1.56460 1.24698 0.95246 0.97318 1.01396 0.86555 0.79218 0.84903 0.77825 1.20912 1.21592 1.20286 1.19070 0.80208 0.94966 1.44252 0.88931 1.42640 1.04230 1.01386 1.89410 1.21276 0.89913 0.89913 0.92313 0.90729 1.23030 0.96993 0.97600 1.00893 1.22509 0.94906 0.97552 0.88198 1.48412 1.24718 1.32377 1.28425 1.17939 0.86275 0.79357 0.81222 1.90793 1.49791 1.64883 1.35655 1.20107 0.94895 0.98563 0.96639 1.20967 0.96339 0.93557 0.98068 1.20901 0.93465 0.99909 0.97295 1.19205 0.96815 0.97916 0.96264 1.23247 0.88663 0.96152 0.94847 1.67393 1.34120 1.15444 1.02418 1.22196 0.95555 0.92620 0.96872 1.21988 0.94968 1.01166 0.98411 1.18176 0.94905 0.95937 0.94814 1.23095 0.92238 0.99124 0.98656 1.23430 0.86199 0.93024 1.01666 0.92837 0.80188 0.89540 0.90384 0.90671 0.90415 0.84148 0.84310 0.81857 0.82856 0.84105 0.80975 0.90182 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.97 55.49 0.78 -27.58 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.89 21.10 27.73 -169.99 -4.71 16.38 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 7 C -0.26 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -16.03 5.08 -51.35 -0.26 -16.29 16 10 C 0.18 3.07 3.69 -65.78 -0.24 2.83 16 11 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 12 C -0.15 -1.80 6.57 -24.89 -0.16 -1.96 16 13 C 0.09 0.97 4.86 -3.05 -0.01 0.95 16 14 N -0.61 -8.82 3.33 -178.10 -0.59 -9.41 16 15 C 0.56 8.72 7.81 -12.31 -0.10 8.62 16 16 O -0.53 -10.18 16.56 5.32 0.09 -10.09 16 17 C -0.10 -1.19 5.87 -104.95 -0.62 -1.81 16 18 C -0.07 -0.76 9.49 -39.55 -0.38 -1.14 16 19 C -0.10 -0.82 9.77 -39.59 -0.39 -1.21 16 20 C -0.10 -0.93 5.75 -106.78 -0.61 -1.54 16 21 C 0.14 1.19 11.04 -16.97 -0.19 1.00 16 22 N -0.49 -4.68 10.29 -13.15 -0.14 -4.82 16 23 C 0.07 0.58 11.07 -17.96 -0.20 0.38 16 24 C -0.15 -1.15 9.88 -39.36 -0.39 -1.53 16 25 C -0.03 -0.32 5.74 -106.83 -0.61 -0.93 16 26 C -0.11 -1.13 8.40 -38.78 -0.33 -1.46 16 27 C 0.08 1.42 6.63 -2.53 -0.02 1.41 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.36 7.71 5.57 -40.82 -0.23 7.49 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.94 8.00 -51.93 -0.42 0.53 16 32 H 0.08 0.65 6.75 -51.93 -0.35 0.30 16 33 H 0.08 0.67 6.72 -51.93 -0.35 0.32 16 34 H 0.14 1.51 7.62 -52.49 -0.40 1.11 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.17 1.42 2.69 -60.86 -0.16 1.25 16 40 H 0.08 1.58 7.98 -51.93 -0.41 1.16 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -34.07 338.58 -9.10 -43.17 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.87 Total: 6.76 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -4.49 Total: -3.22 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.21 Total: -58.10 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.07 -9.10 -43.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019610512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.414 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds