Wall clock time and date at job start Fri Apr 10 2020 22:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00211 * 2 1 4 4 H 1.48507 * 109.47194 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47487 * 29.99630 * 3 2 1 6 6 H 1.48497 * 109.47474 * 149.99745 * 3 2 1 7 7 C 1.38816 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99998 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99833 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00051 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.91407 * 37.45289 * 10 9 7 12 12 C 1.55156 * 111.00311 * 161.35541 * 10 9 7 13 13 C 1.54337 * 103.01951 * 153.38297 * 12 10 9 14 14 N 1.47029 * 107.26336 * 338.13785 * 13 12 10 15 15 C 1.34779 * 125.64399 * 178.85060 * 14 13 12 16 16 O 1.21549 * 119.99673 * 185.53473 * 15 14 13 17 17 C 1.47889 * 120.00038 * 5.53379 * 15 14 13 18 18 C 1.40601 * 119.72831 * 172.91589 * 17 15 14 19 19 C 1.35839 * 120.95313 * 179.97438 * 18 17 15 20 20 C 1.40498 * 119.88186 * 0.04231 * 19 18 17 21 21 C 1.40480 * 121.84099 * 179.97438 * 20 19 18 22 22 N 1.31212 * 119.94199 * 179.97438 * 21 20 19 23 23 C 1.32564 * 122.79952 * 359.72805 * 22 21 20 24 24 C 1.36213 * 121.84606 * 0.54945 * 23 22 21 25 25 C 1.40757 * 118.67805 * 359.47155 * 24 23 22 26 26 C 1.38525 * 119.73157 * 352.89147 * 17 15 14 27 27 C 1.47420 * 108.70584 * 358.58782 * 14 13 12 28 28 H 0.97007 * 119.99864 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99849 * 0.02562 * 9 7 2 30 30 H 1.09005 * 110.71771 * 271.93710 * 12 10 9 31 31 H 1.08995 * 110.72005 * 35.21408 * 12 10 9 32 32 H 1.08996 * 109.99020 * 218.66484 * 13 12 10 33 33 H 1.08993 * 109.78092 * 97.49332 * 13 12 10 34 34 H 1.08000 * 119.52261 * 359.97438 * 18 17 15 35 35 H 1.08002 * 120.06012 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.03332 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.07584 * 180.29899 * 23 22 21 38 38 H 1.08001 * 120.66280 * 179.75034 * 24 23 22 39 39 H 1.07997 * 120.36514 * 359.97438 * 26 17 15 40 40 H 1.08995 * 110.37164 * 143.19326 * 27 14 13 41 41 H 1.09004 * 110.36524 * 265.40902 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.6063 -3.2122 -0.6188 12 6 5.5785 -2.2665 -0.4637 13 6 6.3260 -3.4280 0.2249 14 7 5.5084 -3.8554 1.3696 15 6 5.8057 -4.8622 2.2150 16 8 5.0071 -5.1947 3.0688 17 6 7.1037 -5.5622 2.1036 18 6 7.4717 -6.5076 3.0771 19 6 8.6576 -7.1655 2.9989 20 6 9.5351 -6.9026 1.9336 21 6 10.7715 -7.5584 1.8127 22 7 11.5621 -7.2844 0.8020 23 6 11.2474 -6.4039 -0.1377 24 6 10.0752 -5.7107 -0.1095 25 6 9.1739 -5.9503 0.9447 26 6 7.9466 -5.2816 1.0408 27 6 4.3126 -2.9964 1.4435 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3623 -0.0004 30 1 5.6545 -2.3451 -1.5482 31 1 5.9621 -1.3068 -0.1176 32 1 7.3019 -3.0890 0.5724 33 1 6.4461 -4.2554 -0.4743 34 1 6.8019 -6.7137 3.8988 35 1 8.9260 -7.8886 3.7549 36 1 11.0707 -8.2881 2.5505 37 1 11.9417 -6.2284 -0.9462 38 1 9.8400 -4.9947 -0.8832 39 1 7.6607 -4.5555 0.2942 40 1 3.4465 -3.5779 1.7593 41 1 4.4829 -2.1674 2.1305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019610512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:32 Heat of formation + Delta-G solvation = 43.980957 kcal Electronic energy + Delta-G solvation = -24546.985415 eV Core-core repulsion = 21006.200039 eV Total energy + Delta-G solvation = -3540.785376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.09733 -41.03219 -38.96883 -37.94260 -36.20530 -34.20570 -33.58605 -32.45414 -31.42965 -30.89883 -29.22249 -26.66550 -25.34506 -24.60573 -24.18801 -23.01759 -21.94338 -21.13368 -19.83847 -19.10082 -18.39994 -17.97132 -17.53000 -16.90826 -16.58518 -16.41372 -15.82819 -15.69075 -15.49177 -15.15723 -14.83684 -14.68439 -14.60476 -14.50572 -14.13815 -13.94070 -13.69062 -13.61787 -13.26295 -13.03113 -12.96200 -12.57577 -12.35736 -12.10970 -11.86188 -11.79790 -11.52333 -11.23078 -11.20828 -11.02493 -10.47524 -10.21600 -9.80582 -9.39120 -9.10169 -8.04605 -5.41587 -0.83050 -0.32607 0.82943 1.38633 1.42478 1.43708 1.50339 1.77796 2.27610 2.47731 3.06888 3.19561 3.27415 3.36712 3.53076 3.57631 3.71936 3.78910 3.83558 3.92089 4.06125 4.08168 4.13703 4.26509 4.34193 4.41654 4.50052 4.59972 4.66562 4.75579 4.78770 4.90540 4.92215 5.06662 5.09372 5.15728 5.21342 5.26986 5.32230 5.61477 5.73902 5.74651 6.18707 6.37933 6.94269 6.99700 7.04368 7.76430 7.97023 9.16589 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.002848 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.206160 B = 9829.774363 C =10605.722515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.301 1.301 6 H -0.247 1.247 7 C -0.240 4.240 8 H 0.052 0.948 9 N -0.736 5.736 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.131 4.131 13 C 0.087 3.913 14 N -0.606 5.606 15 C 0.558 3.442 16 O -0.586 6.586 17 C -0.118 4.118 18 C -0.094 4.094 19 C -0.080 4.080 20 C -0.111 4.111 21 C 0.141 3.859 22 N -0.507 5.507 23 C 0.062 3.938 24 C -0.141 4.141 25 C -0.049 4.049 26 C -0.098 4.098 27 C 0.089 3.911 28 H 0.259 0.741 29 H 0.372 0.628 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.170 0.830 36 H 0.191 0.809 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.193 0.807 40 H 0.041 0.959 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.316 -12.359 -0.866 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.171 1.171 7 C -0.371 4.371 8 H 0.070 0.930 9 N -0.378 5.378 10 C 0.057 3.943 11 H 0.081 0.919 12 C -0.169 4.169 13 C -0.034 4.034 14 N -0.338 5.338 15 C 0.349 3.651 16 O -0.468 6.468 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.030 4.030 22 N -0.215 5.215 23 C -0.081 4.081 24 C -0.161 4.161 25 C -0.054 4.054 26 C -0.115 4.115 27 C -0.037 4.037 28 H 0.067 0.933 29 H 0.207 0.793 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.187 0.813 36 H 0.208 0.792 37 H 0.195 0.805 38 H 0.190 0.810 39 H 0.209 0.791 40 H 0.059 0.941 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 28.524 -12.992 -0.612 31.350 hybrid contribution -1.624 1.423 0.610 2.244 sum 26.901 -11.569 -0.002 29.283 Atomic orbital electron populations 1.69908 1.07437 1.26896 1.59053 1.25602 0.96140 1.01673 1.02067 0.85343 0.78649 0.78934 0.78393 1.19718 1.22800 1.17092 1.18992 0.82601 0.93392 1.42123 0.92954 1.42538 1.02401 1.03440 1.89462 1.21438 0.93013 0.87854 0.91950 0.91927 1.23001 0.92270 0.98839 1.02772 1.22885 0.95256 0.98070 0.87149 1.48423 1.24103 1.31763 1.29517 1.18568 0.87093 0.79105 0.80360 1.90754 1.51652 1.66516 1.37868 1.19877 0.93764 0.99915 0.98721 1.20975 0.97445 0.94660 0.98166 1.21162 0.92034 0.99252 0.97517 1.19458 0.97319 0.98115 0.96387 1.23674 0.88026 0.96257 0.95083 1.67451 1.34760 1.16185 1.03101 1.22673 0.96218 0.92083 0.97098 1.22299 0.94143 1.01302 0.98311 1.18432 0.95096 0.96188 0.95700 1.23202 0.91724 0.98826 0.97761 1.23021 0.86537 0.92654 1.01443 0.93252 0.79313 0.86708 0.89293 0.87337 0.87456 0.85321 0.81288 0.79235 0.80542 0.81020 0.79106 0.94080 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.59 13.97 21.65 0.30 -62.29 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 3 Si 0.96 43.54 27.73 68.60 1.90 45.44 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 7 C -0.24 -13.31 10.47 84.03 0.88 -12.43 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 N -0.74 -31.73 5.08 -316.37 -1.61 -33.34 16 10 C 0.17 5.71 3.69 46.39 0.17 5.88 16 11 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 12 C -0.13 -2.71 6.57 31.79 0.21 -2.50 16 13 C 0.09 1.52 4.86 86.73 0.42 1.94 16 14 N -0.61 -17.28 3.33 -835.67 -2.78 -20.06 16 15 C 0.56 17.59 7.81 86.80 0.68 18.27 16 16 O -0.59 -23.89 16.56 -3.87 -0.06 -23.96 16 17 C -0.12 -2.79 5.87 -20.08 -0.12 -2.90 16 18 C -0.09 -2.00 9.49 22.29 0.21 -1.79 16 19 C -0.08 -1.22 9.77 22.26 0.22 -1.00 16 20 C -0.11 -1.74 5.75 -21.26 -0.12 -1.87 16 21 C 0.14 1.92 11.04 85.33 0.94 2.86 16 22 N -0.51 -8.15 10.29 -195.51 -2.01 -10.17 16 23 C 0.06 0.78 11.07 84.11 0.93 1.71 16 24 C -0.14 -1.60 9.88 22.41 0.22 -1.38 16 25 C -0.05 -0.78 5.74 -21.29 -0.12 -0.90 16 26 C -0.10 -1.65 8.40 22.79 0.19 -1.46 16 27 C 0.09 3.22 6.63 86.86 0.58 3.79 16 28 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 29 H 0.37 14.88 5.57 -92.71 -0.52 14.37 16 30 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.09 1.72 8.00 -2.39 -0.02 1.70 16 32 H 0.11 1.29 6.75 -2.39 -0.02 1.28 16 33 H 0.11 1.32 6.72 -2.39 -0.02 1.30 16 34 H 0.13 2.95 7.62 -2.91 -0.02 2.93 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.19 2.25 2.69 -10.77 -0.03 2.22 16 40 H 0.04 1.76 7.98 -2.39 -0.02 1.74 16 41 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -80.36 338.58 1.97 -78.39 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.48 Total: 20.92 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.75 Total: 5.05 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.10 Total: -125.85 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Total: -80.36 1.97 -78.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019610512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.370 kcal (2) G-P(sol) polarization free energy of solvation -80.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds