Wall clock time and date at job start Fri Apr 10 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48493 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46716 * 299.99747 * 3 2 1 6 6 H 1.48493 * 109.47120 * 59.99427 * 3 2 1 7 7 C 1.38819 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99583 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00076 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.91904 * 37.44280 * 10 9 7 12 12 C 1.55157 * 111.00523 * 161.34460 * 10 9 7 13 13 C 1.54340 * 103.02185 * 153.37814 * 12 10 9 14 14 N 1.47025 * 107.26148 * 338.14321 * 13 12 10 15 15 C 1.34782 * 125.64404 * 178.84698 * 14 13 12 16 16 O 1.21568 * 119.99836 * 185.54369 * 15 14 13 17 17 C 1.47771 * 120.00116 * 5.54755 * 15 14 13 18 18 C 1.40652 * 119.69919 * 172.85017 * 17 15 14 19 19 C 1.35852 * 120.87743 * 179.97438 * 18 17 15 20 20 C 1.40396 * 119.84698 * 0.08396 * 19 18 17 21 21 C 1.40639 * 121.98827 * 179.65239 * 20 19 18 22 22 C 1.36224 * 118.73080 * 179.74011 * 21 20 19 23 23 N 1.32596 * 121.90115 * 0.55574 * 22 21 20 24 24 C 1.31241 * 122.73905 * 359.71749 * 23 22 21 25 25 C 1.40549 * 119.88275 * 359.97438 * 24 23 22 26 26 C 1.38568 * 119.70002 * 352.86758 * 17 15 14 27 27 C 1.47416 * 108.70620 * 358.58134 * 14 13 12 28 28 H 0.96992 * 120.00242 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99701 * 359.97438 * 9 7 2 30 30 H 1.08993 * 110.72397 * 271.93802 * 12 10 9 31 31 H 1.09004 * 110.71869 * 35.21298 * 12 10 9 32 32 H 1.08999 * 109.99106 * 218.66992 * 13 12 10 33 33 H 1.09003 * 109.77865 * 97.49510 * 13 12 10 34 34 H 1.07995 * 119.56465 * 359.97438 * 18 17 15 35 35 H 1.08003 * 120.07502 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.63396 * 0.28179 * 21 20 19 37 37 H 1.07997 * 119.05065 * 180.24962 * 22 21 20 38 38 H 1.08001 * 120.05845 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.34495 * 359.97438 * 26 17 15 40 40 H 1.09002 * 110.36937 * 143.19389 * 27 14 13 41 41 H 1.09001 * 110.37049 * 265.40531 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9527 -3.5896 0.6195 12 6 1.1477 -4.8246 0.4639 13 6 1.7799 -6.0527 -0.2248 14 7 2.5591 -5.5581 -1.3693 15 6 3.2825 -6.3189 -2.2146 16 8 3.9703 -5.7933 -3.0682 17 6 3.2395 -7.7918 -2.1038 18 6 3.8737 -8.5827 -3.0788 19 6 3.8497 -9.9387 -3.0001 20 6 3.1831 -10.5652 -1.9351 21 6 3.1239 -11.9650 -1.8134 22 6 2.4637 -12.5026 -0.7500 23 7 1.8699 -11.7449 0.1619 24 6 1.8790 -10.4336 0.1104 25 6 2.5387 -9.7788 -0.9439 26 6 2.5745 -8.3812 -1.0406 27 6 2.4130 -4.0930 -1.4429 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 1.1774 -4.9300 1.5483 31 1 0.1247 -4.6769 0.1175 32 1 0.9983 -6.7282 -0.5727 33 1 2.4363 -6.5706 0.4745 34 1 4.3866 -8.1057 -3.9008 35 1 4.3413 -10.5335 -3.7558 36 1 3.6003 -12.6016 -2.5444 37 1 2.4185 -13.5769 -0.6493 38 1 1.3813 -9.8586 0.8773 39 1 2.0891 -7.7699 -0.2942 40 1 3.3499 -3.6337 -1.7584 41 1 1.6102 -3.8258 -2.1300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019613704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:40 Heat of formation + Delta-G solvation = 62.506842 kcal Electronic energy + Delta-G solvation = -24493.759099 eV Core-core repulsion = 20953.777066 eV Total energy + Delta-G solvation = -3539.982033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.27384 -39.93743 -37.69522 -36.97475 -34.43627 -33.34813 -31.75204 -31.45625 -30.16260 -29.81653 -27.56800 -25.38929 -24.35196 -23.59828 -23.20115 -22.13499 -20.49229 -19.92228 -18.45599 -17.62183 -17.18261 -16.88500 -16.32263 -16.08115 -15.24647 -15.15486 -14.74611 -14.45275 -14.30859 -14.13860 -13.90308 -13.72004 -13.45898 -13.20918 -12.86256 -12.57786 -12.44685 -12.11865 -12.10385 -11.96780 -11.18841 -11.09375 -10.84562 -10.72242 -10.55806 -10.34769 -10.04280 -9.99503 -9.81875 -9.72392 -9.40883 -9.07111 -8.50282 -8.41208 -7.13281 -5.88315 -3.19368 -0.09387 0.44088 1.48582 2.36328 3.01910 3.23190 3.38733 3.45518 3.47100 3.78816 4.05088 4.13065 4.32728 4.39302 4.48763 4.50925 4.68140 4.74731 4.84148 4.94689 5.02220 5.10862 5.25030 5.33140 5.35436 5.48182 5.51912 5.57394 5.63307 5.67402 5.82781 5.97082 6.03678 6.05573 6.15848 6.25382 6.27361 6.37761 6.45377 6.54825 6.80328 7.60963 7.61526 7.62837 8.19981 8.29299 9.41541 9.93553 10.28312 11.33692 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.002710 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.259127 B =10330.835706 C =11108.337552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.143 4.143 13 C 0.090 3.910 14 N -0.605 5.605 15 C 0.564 3.436 16 O -0.539 6.539 17 C -0.121 4.121 18 C -0.047 4.047 19 C -0.124 4.124 20 C -0.010 4.010 21 C -0.161 4.161 22 C 0.081 3.919 23 N -0.493 5.493 24 C 0.156 3.844 25 C -0.122 4.122 26 C -0.086 4.086 27 C 0.081 3.919 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.074 0.926 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 -24.602 -1.312 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.182 4.182 13 C -0.033 4.033 14 N -0.338 5.338 15 C 0.353 3.647 16 O -0.417 6.417 17 C -0.124 4.124 18 C -0.067 4.067 19 C -0.142 4.142 20 C -0.016 4.016 21 C -0.180 4.180 22 C -0.062 4.062 23 N -0.200 5.200 24 C -0.015 4.015 25 C -0.125 4.125 26 C -0.105 4.105 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.192 0.808 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.124 -24.729 -1.169 25.098 hybrid contribution 0.577 1.220 -0.907 1.626 sum 4.701 -23.509 -2.075 24.064 Atomic orbital electron populations 1.69662 1.05171 1.25889 1.56977 1.24776 0.95540 0.97892 1.02271 0.86098 0.78912 0.83815 0.77247 1.20397 1.21717 1.21739 1.19296 0.91187 0.83836 1.43634 0.90842 1.42303 1.05806 0.99364 1.87656 1.21310 0.94664 0.86125 0.91919 0.91631 1.22991 1.00533 0.93989 1.00640 1.22530 0.94754 0.97860 0.88144 1.48430 1.47499 1.09523 1.28376 1.17894 0.79672 0.85912 0.81187 1.90783 1.40874 1.74192 1.35876 1.20039 1.01620 0.93518 0.97246 1.21026 0.95055 0.93191 0.97433 1.20874 1.00677 0.94585 0.98031 1.18339 0.95350 0.93622 0.94260 1.21931 1.01713 0.94087 1.00293 1.22241 0.93633 1.00178 0.90144 1.67477 1.18209 1.06888 1.27467 1.23327 0.93043 0.90364 0.94779 1.19044 1.01535 0.94430 0.97446 1.23145 0.95454 0.93935 0.97994 1.23511 1.02238 0.76476 1.02182 0.93350 0.77799 0.89779 0.90121 0.90674 0.90546 0.84209 0.84604 0.84386 0.82964 0.81575 0.80775 0.90728 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.60 9.98 -15.06 -0.15 -6.75 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -16.59 5.28 -51.35 -0.27 -16.86 16 10 C 0.17 3.12 3.69 -65.78 -0.24 2.87 16 11 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 12 C -0.14 -1.90 6.57 -24.89 -0.16 -2.06 16 13 C 0.09 1.00 4.86 -3.05 -0.01 0.99 16 14 N -0.61 -9.09 3.33 -178.59 -0.59 -9.69 16 15 C 0.56 8.94 7.80 -12.36 -0.10 8.84 16 16 O -0.54 -10.46 16.56 5.31 0.09 -10.37 16 17 C -0.12 -1.51 5.87 -104.97 -0.62 -2.13 16 18 C -0.05 -0.53 9.49 -39.53 -0.38 -0.91 16 19 C -0.12 -1.14 9.77 -39.63 -0.39 -1.53 16 20 C -0.01 -0.10 5.75 -106.74 -0.61 -0.72 16 21 C -0.16 -1.27 9.87 -39.40 -0.39 -1.66 16 22 C 0.08 0.67 11.07 -17.95 -0.20 0.47 16 23 N -0.49 -4.91 10.30 -13.11 -0.14 -5.05 16 24 C 0.16 1.40 11.05 -16.93 -0.19 1.21 16 25 C -0.12 -1.21 5.74 -106.88 -0.61 -1.82 16 26 C -0.09 -0.87 8.39 -38.75 -0.33 -1.19 16 27 C 0.08 1.46 6.63 -2.53 -0.02 1.44 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.39 9.52 7.71 -40.82 -0.31 9.21 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 32 H 0.08 0.68 6.75 -51.93 -0.35 0.33 16 33 H 0.08 0.68 6.72 -51.93 -0.35 0.33 16 34 H 0.14 1.56 7.62 -52.49 -0.40 1.16 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.18 1.44 2.68 -61.42 -0.16 1.28 16 40 H 0.07 1.49 7.98 -51.93 -0.41 1.07 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -32.97 341.67 -9.46 -42.44 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.91 Total: 7.10 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.49 Total: -3.26 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.28 Total: -57.89 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.97 -9.46 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019613704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.943 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds