Wall clock time and date at job start Fri Apr 10 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48493 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46716 * 299.99747 * 3 2 1 6 6 H 1.48493 * 109.47120 * 59.99427 * 3 2 1 7 7 C 1.38819 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99583 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00076 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.91904 * 37.44280 * 10 9 7 12 12 C 1.55157 * 111.00523 * 161.34460 * 10 9 7 13 13 C 1.54340 * 103.02185 * 153.37814 * 12 10 9 14 14 N 1.47025 * 107.26148 * 338.14321 * 13 12 10 15 15 C 1.34782 * 125.64404 * 178.84698 * 14 13 12 16 16 O 1.21568 * 119.99836 * 185.54369 * 15 14 13 17 17 C 1.47771 * 120.00116 * 5.54755 * 15 14 13 18 18 C 1.40652 * 119.69919 * 172.85017 * 17 15 14 19 19 C 1.35852 * 120.87743 * 179.97438 * 18 17 15 20 20 C 1.40396 * 119.84698 * 0.08396 * 19 18 17 21 21 C 1.40639 * 121.98827 * 179.65239 * 20 19 18 22 22 C 1.36224 * 118.73080 * 179.74011 * 21 20 19 23 23 N 1.32596 * 121.90115 * 0.55574 * 22 21 20 24 24 C 1.31241 * 122.73905 * 359.71749 * 23 22 21 25 25 C 1.40549 * 119.88275 * 359.97438 * 24 23 22 26 26 C 1.38568 * 119.70002 * 352.86758 * 17 15 14 27 27 C 1.47416 * 108.70620 * 358.58134 * 14 13 12 28 28 H 0.96992 * 120.00242 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99701 * 359.97438 * 9 7 2 30 30 H 1.08993 * 110.72397 * 271.93802 * 12 10 9 31 31 H 1.09004 * 110.71869 * 35.21298 * 12 10 9 32 32 H 1.08999 * 109.99106 * 218.66992 * 13 12 10 33 33 H 1.09003 * 109.77865 * 97.49510 * 13 12 10 34 34 H 1.07995 * 119.56465 * 359.97438 * 18 17 15 35 35 H 1.08003 * 120.07502 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.63396 * 0.28179 * 21 20 19 37 37 H 1.07997 * 119.05065 * 180.24962 * 22 21 20 38 38 H 1.08001 * 120.05845 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.34495 * 359.97438 * 26 17 15 40 40 H 1.09002 * 110.36937 * 143.19389 * 27 14 13 41 41 H 1.09001 * 110.37049 * 265.40531 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9527 -3.5896 0.6195 12 6 1.1477 -4.8246 0.4639 13 6 1.7799 -6.0527 -0.2248 14 7 2.5591 -5.5581 -1.3693 15 6 3.2825 -6.3189 -2.2146 16 8 3.9703 -5.7933 -3.0682 17 6 3.2395 -7.7918 -2.1038 18 6 3.8737 -8.5827 -3.0788 19 6 3.8497 -9.9387 -3.0001 20 6 3.1831 -10.5652 -1.9351 21 6 3.1239 -11.9650 -1.8134 22 6 2.4637 -12.5026 -0.7500 23 7 1.8699 -11.7449 0.1619 24 6 1.8790 -10.4336 0.1104 25 6 2.5387 -9.7788 -0.9439 26 6 2.5745 -8.3812 -1.0406 27 6 2.4130 -4.0930 -1.4429 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 1.1774 -4.9300 1.5483 31 1 0.1247 -4.6769 0.1175 32 1 0.9983 -6.7282 -0.5727 33 1 2.4363 -6.5706 0.4745 34 1 4.3866 -8.1057 -3.9008 35 1 4.3413 -10.5335 -3.7558 36 1 3.6003 -12.6016 -2.5444 37 1 2.4185 -13.5769 -0.6493 38 1 1.3813 -9.8586 0.8773 39 1 2.0891 -7.7699 -0.2942 40 1 3.3499 -3.6337 -1.7584 41 1 1.6102 -3.8258 -2.1300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019613704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:39 Heat of formation + Delta-G solvation = 41.051081 kcal Electronic energy + Delta-G solvation = -24494.689491 eV Core-core repulsion = 20953.777066 eV Total energy + Delta-G solvation = -3540.912425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.08394 -40.99411 -38.88591 -37.92318 -36.09024 -34.26324 -33.27811 -32.28249 -31.24376 -31.01290 -28.94818 -26.52246 -25.53398 -24.80755 -24.13796 -23.04916 -21.77760 -21.12822 -19.45256 -19.18064 -18.24840 -17.80968 -17.38092 -17.17020 -16.40606 -16.26171 -15.91589 -15.71491 -15.29983 -15.11650 -15.02542 -14.81033 -14.53276 -14.45209 -14.15704 -13.80554 -13.75120 -13.15537 -13.02749 -12.92705 -12.85187 -12.66723 -12.38109 -12.07556 -11.99347 -11.74092 -11.49904 -11.21947 -11.14400 -10.98716 -10.47324 -10.21475 -9.75086 -9.12344 -9.07918 -7.98605 -5.28090 -0.80813 -0.32139 0.78463 1.46435 1.46840 1.48179 1.57256 1.82972 2.28725 2.54339 3.06579 3.25119 3.35473 3.44651 3.57411 3.63061 3.69407 3.85061 3.90660 4.00142 4.04874 4.13611 4.19944 4.31553 4.32570 4.50535 4.56609 4.66472 4.68611 4.79823 4.81225 4.85306 4.94287 4.96672 5.10986 5.21131 5.26244 5.33239 5.36433 5.52178 5.60773 5.73216 6.23889 6.43092 6.98443 6.99111 7.31501 8.02898 8.26813 9.24162 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.002710 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.259127 B =10330.835706 C =11108.337552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.722 5.722 10 C 0.165 3.835 11 H 0.064 0.936 12 C -0.130 4.130 13 C 0.088 3.912 14 N -0.606 5.606 15 C 0.560 3.440 16 O -0.589 6.589 17 C -0.144 4.144 18 C -0.067 4.067 19 C -0.112 4.112 20 C -0.024 4.024 21 C -0.159 4.159 22 C 0.076 3.924 23 N -0.514 5.514 24 C 0.156 3.844 25 C -0.136 4.136 26 C -0.066 4.066 27 C 0.091 3.909 28 H 0.252 0.748 29 H 0.379 0.621 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.195 0.805 39 H 0.194 0.806 40 H 0.045 0.955 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -27.745 -0.082 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.361 5.361 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.168 4.168 13 C -0.033 4.033 14 N -0.337 5.337 15 C 0.351 3.649 16 O -0.471 6.471 17 C -0.147 4.147 18 C -0.087 4.087 19 C -0.130 4.130 20 C -0.029 4.029 21 C -0.178 4.178 22 C -0.067 4.067 23 N -0.222 5.222 24 C -0.015 4.015 25 C -0.138 4.138 26 C -0.085 4.085 27 C -0.035 4.035 28 H 0.061 0.939 29 H 0.212 0.788 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.195 0.805 38 H 0.212 0.788 39 H 0.211 0.789 40 H 0.063 0.937 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.213 -27.932 0.086 28.248 hybrid contribution 0.580 1.991 -1.285 2.440 sum 4.793 -25.941 -1.199 26.408 Atomic orbital electron populations 1.69787 1.06392 1.26138 1.59044 1.25495 0.96349 1.00879 1.03363 0.85161 0.78231 0.80187 0.76711 1.19398 1.22274 1.21669 1.19608 0.91381 0.85208 1.41528 0.90896 1.42419 1.05573 1.00389 1.87764 1.21482 0.95468 0.85897 0.91766 0.91843 1.22935 0.99299 0.92183 1.02375 1.22876 0.95752 0.97424 0.87233 1.48431 1.47846 1.07992 1.29481 1.18496 0.78677 0.87412 0.80274 1.90743 1.43071 1.75365 1.37945 1.19792 1.04455 0.91075 0.99369 1.21030 0.96051 0.94157 0.97466 1.21112 0.99792 0.93753 0.98337 1.18672 0.95210 0.94758 0.94249 1.22224 1.01325 0.93495 1.00748 1.22732 0.92805 1.01422 0.89728 1.67548 1.18922 1.07442 1.28302 1.23778 0.92474 0.90329 0.94887 1.19211 1.02142 0.94261 0.98160 1.23230 0.93964 0.94328 0.97019 1.23053 0.99913 0.78933 1.01575 0.93861 0.78753 0.87223 0.90304 0.87541 0.87108 0.85294 0.81919 0.81568 0.80541 0.78779 0.78944 0.93671 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.19 13.06 21.65 0.28 -56.91 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.97 45.66 29.55 68.60 2.03 47.68 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.25 -13.23 9.98 84.04 0.84 -12.39 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -34.20 5.28 -316.38 -1.67 -35.87 16 10 C 0.16 5.94 3.69 46.39 0.17 6.11 16 11 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 12 C -0.13 -3.15 6.57 31.79 0.21 -2.94 16 13 C 0.09 1.70 4.86 86.73 0.42 2.12 16 14 N -0.61 -17.97 3.33 -837.19 -2.78 -20.75 16 15 C 0.56 18.01 7.80 86.76 0.68 18.69 16 16 O -0.59 -24.14 16.56 -3.93 -0.07 -24.20 16 17 C -0.14 -3.48 5.87 -20.09 -0.12 -3.59 16 18 C -0.07 -1.48 9.49 22.31 0.21 -1.27 16 19 C -0.11 -1.84 9.77 22.24 0.22 -1.62 16 20 C -0.02 -0.39 5.75 -21.24 -0.12 -0.51 16 21 C -0.16 -1.93 9.87 22.39 0.22 -1.71 16 22 C 0.08 0.99 11.07 84.11 0.93 1.92 16 23 N -0.51 -8.52 10.30 -195.41 -2.01 -10.53 16 24 C 0.16 2.22 11.05 85.34 0.94 3.17 16 25 C -0.14 -2.26 5.74 -21.32 -0.12 -2.38 16 26 C -0.07 -1.16 8.39 22.81 0.19 -0.97 16 27 C 0.09 3.41 6.63 86.86 0.58 3.99 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.38 19.00 7.71 -92.71 -0.71 18.29 16 30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.99 8.00 -2.38 -0.02 1.97 16 32 H 0.11 1.49 6.75 -2.39 -0.02 1.48 16 33 H 0.11 1.47 6.72 -2.39 -0.02 1.45 16 34 H 0.13 3.03 7.62 -2.91 -0.02 3.01 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.19 2.39 2.68 -11.30 -0.03 2.36 16 40 H 0.04 1.91 7.98 -2.39 -0.02 1.90 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.92 341.67 1.83 -73.09 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.34 Total: 22.24 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.71 Total: 5.26 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -6.18 Total: -124.06 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.07 Total: -24.20 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.92 1.83 -73.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019613704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.138 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds