Wall clock time and date at job start Fri Apr 10 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34778 * 125.64582 * 178.91315 * 14 13 12 16 16 O 1.21499 * 119.99558 * 180.02562 * 15 14 13 17 17 C 1.48273 * 120.00107 * 0.02796 * 15 14 13 18 18 C 1.40275 * 119.23479 * 179.72158 * 17 15 14 19 19 C 1.36511 * 119.80948 * 179.78106 * 18 17 15 20 20 C 1.40749 * 118.24245 * 0.46654 * 19 18 17 21 21 C 1.40423 * 121.27001 * 179.80297 * 20 19 18 22 22 C 1.36133 * 119.65312 * 179.97438 * 21 20 19 23 23 C 1.39439 * 120.90827 * 359.97438 * 22 21 20 24 24 C 1.35996 * 121.08755 * 0.06725 * 23 22 21 25 25 C 1.40823 * 119.74108 * 359.91216 * 24 23 22 26 26 N 1.31881 * 119.23678 * 0.02562 * 17 15 14 27 27 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 31 31 H 1.09001 * 110.71684 * 35.03174 * 12 10 9 32 32 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 33 33 H 1.08999 * 109.88345 * 218.38852 * 13 12 10 34 34 H 1.08004 * 120.09684 * 0.02613 * 18 17 15 35 35 H 1.07998 * 120.87612 * 180.24378 * 19 18 17 36 36 H 1.08000 * 120.16935 * 359.95899 * 21 20 19 37 37 H 1.07991 * 119.54852 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.45240 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.12887 * 179.97438 * 24 23 22 40 40 H 1.09006 * 110.36031 * 265.28612 * 27 14 13 41 41 H 1.08995 * 110.37034 * 142.97033 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0742 -6.4395 -2.1731 16 8 3.5865 -5.9740 -3.1716 17 6 3.1560 -7.8960 -1.9078 18 6 3.8237 -8.7226 -2.8235 19 6 3.9099 -10.0646 -2.5887 20 6 3.3080 -10.5771 -1.4242 21 6 3.3545 -11.9477 -1.1223 22 6 2.7615 -12.4076 0.0135 23 6 2.1076 -11.5360 0.8836 24 6 2.0415 -10.2028 0.6237 25 6 2.6429 -9.6874 -0.5407 26 7 2.5940 -8.3851 -0.8196 27 6 2.2754 -4.1724 -1.4461 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 1.3316 -4.8408 1.6904 31 1 0.1468 -4.6622 0.3570 32 1 2.4949 -6.5368 0.5952 33 1 0.9627 -6.7544 -0.2956 34 1 4.2718 -8.2980 -3.7097 35 1 4.4233 -10.7164 -3.2801 36 1 3.8579 -12.6333 -1.7878 37 1 2.7986 -13.4619 0.2443 38 1 1.6455 -11.9263 1.7783 39 1 1.5307 -9.5417 1.3081 40 1 1.4090 -3.9412 -2.0658 41 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019694521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:47 Heat of formation + Delta-G solvation = 48.169728 kcal Electronic energy + Delta-G solvation = -24562.896384 eV Core-core repulsion = 21022.292647 eV Total energy + Delta-G solvation = -3540.603737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28319 -39.63612 -37.60740 -36.92374 -34.49982 -33.83989 -31.73033 -30.89317 -30.33501 -29.47080 -27.52765 -25.43644 -24.09408 -23.50633 -22.64077 -22.30886 -20.47424 -19.83656 -18.28679 -17.81680 -17.54060 -17.17314 -15.97649 -15.80571 -15.38084 -14.89044 -14.75682 -14.61709 -14.46798 -13.97173 -13.71071 -13.61822 -13.45899 -13.14975 -12.92881 -12.48302 -12.31165 -12.04602 -11.92430 -11.84029 -11.32152 -11.12797 -10.93286 -10.72791 -10.62451 -10.31167 -10.17677 -9.98449 -9.57440 -9.21843 -9.13667 -9.00216 -8.64840 -8.34847 -7.13866 -6.15301 -3.17239 -0.09990 0.36197 1.61328 2.22986 3.02685 3.12674 3.51987 3.55344 3.72475 3.79625 3.85088 4.19365 4.37546 4.45143 4.53861 4.64798 4.74045 4.78606 4.95509 5.03108 5.11578 5.27255 5.35049 5.40154 5.57770 5.60852 5.63323 5.69995 5.73306 5.84653 5.96708 6.02594 6.03395 6.06974 6.14701 6.23298 6.37303 6.41847 6.52122 6.57265 6.82150 7.41345 7.69839 7.77163 8.22660 8.70496 9.14325 10.00876 10.13999 11.32590 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002760 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.320552 B =10143.319717 C =10901.354276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.041 4.041 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.178 3.822 11 H 0.069 0.931 12 C -0.149 4.149 13 C 0.123 3.877 14 N -0.589 5.589 15 C 0.572 3.428 16 O -0.538 6.538 17 C 0.126 3.874 18 C -0.123 4.123 19 C -0.065 4.065 20 C -0.090 4.090 21 C -0.101 4.101 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.083 4.083 25 C 0.121 3.879 26 N -0.436 5.436 27 C 0.081 3.919 28 H 0.255 0.745 29 H 0.370 0.630 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.068 0.932 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -27.870 0.251 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.239 4.239 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.469 4.469 8 H 0.085 0.915 9 N -0.363 5.363 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.188 4.188 13 C 0.000 4.000 14 N -0.321 5.321 15 C 0.358 3.642 16 O -0.415 6.415 17 C -0.027 4.027 18 C -0.144 4.144 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.002 4.002 26 N -0.148 5.148 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.379 -25.398 0.334 25.964 hybrid contribution 0.313 -2.393 -0.645 2.498 sum 5.693 -27.791 -0.311 28.370 Atomic orbital electron populations 1.70897 1.06067 1.28499 1.53040 1.25821 0.97009 1.01104 0.99944 0.83242 0.74250 0.75465 0.75977 1.20992 1.22157 1.22108 1.20076 0.92154 0.85580 1.49135 0.91487 1.42317 1.04857 1.00412 1.88707 1.21245 0.95292 0.85604 0.91354 0.91274 1.23068 1.00545 0.94690 1.00457 1.22056 0.96795 0.96266 0.84914 1.48383 1.51864 1.09273 1.22582 1.17565 0.79387 0.84292 0.82934 1.90784 1.47857 1.75381 1.27466 1.21423 0.95286 0.94815 0.91210 1.21771 0.98513 0.93577 1.00543 1.21454 0.96716 0.95253 0.95623 1.18999 0.99261 0.95036 0.95932 1.20999 0.99669 0.93574 0.97756 1.20997 0.97210 1.00229 0.94353 1.20943 0.98781 0.93117 0.99762 1.20912 0.98347 0.95627 0.95282 1.18954 0.97392 0.88552 0.95335 1.68185 1.15896 1.13408 1.17284 1.23479 1.02010 0.76803 1.02140 0.93330 0.79594 0.90263 0.90870 0.90882 0.91191 0.83135 0.83702 0.85105 0.85408 0.85075 0.84290 0.91359 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.82 13.70 55.49 0.76 -28.06 16 2 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 3 Si 1.08 25.88 29.92 -169.99 -5.09 20.79 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.34 -9.43 9.96 -15.06 -0.15 -9.58 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.78 5.24 -51.36 -0.27 -18.05 16 10 C 0.18 3.55 3.71 -65.79 -0.24 3.30 16 11 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 12 C -0.15 -2.36 6.60 -24.90 -0.16 -2.53 16 13 C 0.12 1.81 5.39 -3.06 -0.02 1.79 16 14 N -0.59 -10.20 3.33 -171.47 -0.57 -10.77 16 15 C 0.57 9.97 7.84 -12.13 -0.10 9.88 16 16 O -0.54 -10.76 16.54 5.37 0.09 -10.67 16 17 C 0.13 1.81 6.73 -82.95 -0.56 1.26 16 18 C -0.12 -1.45 9.54 -39.44 -0.38 -1.82 16 19 C -0.06 -0.59 9.88 -39.26 -0.39 -0.98 16 20 C -0.09 -0.88 5.75 -106.71 -0.61 -1.50 16 21 C -0.10 -0.72 9.77 -39.52 -0.39 -1.11 16 22 C -0.11 -0.69 9.96 -39.89 -0.40 -1.08 16 23 C -0.11 -0.73 9.94 -39.94 -0.40 -1.12 16 24 C -0.08 -0.75 9.99 -39.41 -0.39 -1.15 16 25 C 0.12 1.38 6.61 -84.85 -0.56 0.82 16 26 N -0.44 -5.82 6.76 -7.54 -0.05 -5.87 16 27 C 0.08 1.59 6.60 -2.53 -0.02 1.57 16 28 H 0.26 7.67 6.77 -40.82 -0.28 7.39 16 29 H 0.37 9.32 6.59 -40.82 -0.27 9.05 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 32 H 0.07 1.02 7.40 -51.93 -0.38 0.63 16 33 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 34 H 0.15 1.67 7.60 -52.48 -0.40 1.27 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -33.80 344.98 -9.92 -43.72 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.14 Total: 7.24 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -4.85 Total: -3.53 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.13 Total: -62.75 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.80 -9.92 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019694521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.890 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds