Wall clock time and date at job start Fri Apr 10 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34778 * 125.64582 * 178.91315 * 14 13 12 16 16 O 1.21499 * 119.99558 * 180.02562 * 15 14 13 17 17 C 1.48273 * 120.00107 * 0.02796 * 15 14 13 18 18 C 1.40275 * 119.23479 * 179.72158 * 17 15 14 19 19 C 1.36511 * 119.80948 * 179.78106 * 18 17 15 20 20 C 1.40749 * 118.24245 * 0.46654 * 19 18 17 21 21 C 1.40423 * 121.27001 * 179.80297 * 20 19 18 22 22 C 1.36133 * 119.65312 * 179.97438 * 21 20 19 23 23 C 1.39439 * 120.90827 * 359.97438 * 22 21 20 24 24 C 1.35996 * 121.08755 * 0.06725 * 23 22 21 25 25 C 1.40823 * 119.74108 * 359.91216 * 24 23 22 26 26 N 1.31881 * 119.23678 * 0.02562 * 17 15 14 27 27 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 31 31 H 1.09001 * 110.71684 * 35.03174 * 12 10 9 32 32 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 33 33 H 1.08999 * 109.88345 * 218.38852 * 13 12 10 34 34 H 1.08004 * 120.09684 * 0.02613 * 18 17 15 35 35 H 1.07998 * 120.87612 * 180.24378 * 19 18 17 36 36 H 1.08000 * 120.16935 * 359.95899 * 21 20 19 37 37 H 1.07991 * 119.54852 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.45240 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.12887 * 179.97438 * 24 23 22 40 40 H 1.09006 * 110.36031 * 265.28612 * 27 14 13 41 41 H 1.08995 * 110.37034 * 142.97033 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0742 -6.4395 -2.1731 16 8 3.5865 -5.9740 -3.1716 17 6 3.1560 -7.8960 -1.9078 18 6 3.8237 -8.7226 -2.8235 19 6 3.9099 -10.0646 -2.5887 20 6 3.3080 -10.5771 -1.4242 21 6 3.3545 -11.9477 -1.1223 22 6 2.7615 -12.4076 0.0135 23 6 2.1076 -11.5360 0.8836 24 6 2.0415 -10.2028 0.6237 25 6 2.6429 -9.6874 -0.5407 26 7 2.5940 -8.3851 -0.8196 27 6 2.2754 -4.1724 -1.4461 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 1.3316 -4.8408 1.6904 31 1 0.1468 -4.6622 0.3570 32 1 2.4949 -6.5368 0.5952 33 1 0.9627 -6.7544 -0.2956 34 1 4.2718 -8.2980 -3.7097 35 1 4.4233 -10.7164 -3.2801 36 1 3.8579 -12.6333 -1.7878 37 1 2.7986 -13.4619 0.2443 38 1 1.6455 -11.9263 1.7783 39 1 1.5307 -9.5417 1.3081 40 1 1.4090 -3.9412 -2.0658 41 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019694521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:45 Heat of formation + Delta-G solvation = 26.956357 kcal Electronic energy + Delta-G solvation = -24563.816265 eV Core-core repulsion = 21022.292647 eV Total energy + Delta-G solvation = -3541.523618 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.14726 -40.88289 -38.95912 -37.83818 -36.34745 -34.66871 -33.40867 -31.80717 -31.15857 -30.92105 -29.11341 -26.60592 -25.53066 -24.66825 -23.91511 -23.06418 -21.97107 -21.11747 -19.60552 -19.03175 -18.86232 -18.08897 -17.43795 -16.97390 -16.64079 -16.14611 -15.97615 -15.58155 -15.53024 -15.20495 -15.11213 -14.85012 -14.51567 -14.30992 -14.04716 -13.91851 -13.82453 -13.00950 -12.83211 -12.71959 -12.70010 -12.48752 -12.41382 -12.37623 -11.88939 -11.80904 -11.63767 -11.54277 -11.27379 -11.03130 -10.53781 -9.97219 -9.72625 -9.27970 -9.21755 -8.43067 -5.39375 -0.87832 -0.36690 0.91272 1.31575 1.58138 1.67315 1.71889 1.84350 2.15142 2.68258 2.82240 3.06105 3.32595 3.46861 3.50938 3.60231 3.78208 3.80336 3.85271 3.93068 4.12303 4.13895 4.24585 4.27306 4.37542 4.40658 4.49629 4.62704 4.76303 4.84129 4.87524 4.90084 4.98194 5.05727 5.08755 5.14410 5.26077 5.37927 5.43594 5.49604 5.57022 5.86043 6.31031 6.46626 6.53471 6.89648 7.02582 7.91738 8.02185 9.08490 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002760 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.320552 B =10143.319717 C =10901.354276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.098 4.098 3 Si 1.127 2.873 4 H -0.291 1.291 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.339 4.339 8 H 0.066 0.934 9 N -0.733 5.733 10 C 0.173 3.827 11 H 0.064 0.936 12 C -0.134 4.134 13 C 0.135 3.865 14 N -0.594 5.594 15 C 0.568 3.432 16 O -0.575 6.575 17 C 0.099 3.901 18 C -0.143 4.143 19 C -0.046 4.046 20 C -0.100 4.100 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.093 4.093 24 C -0.106 4.106 25 C 0.096 3.904 26 N -0.448 5.448 27 C 0.092 3.908 28 H 0.246 0.754 29 H 0.365 0.635 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.185 0.815 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.051 0.949 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -31.804 1.366 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.290 4.290 3 Si 0.951 3.049 4 H -0.217 1.217 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.470 4.470 8 H 0.084 0.916 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.082 0.918 12 C -0.173 4.173 13 C 0.013 3.987 14 N -0.325 5.325 15 C 0.356 3.644 16 O -0.455 6.455 17 C -0.053 4.053 18 C -0.164 4.164 19 C -0.071 4.071 20 C -0.102 4.102 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.028 4.028 26 N -0.160 5.160 27 C -0.034 4.034 28 H 0.057 0.943 29 H 0.198 0.802 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.202 0.798 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.069 0.931 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.215 -29.395 1.464 30.081 hybrid contribution 0.068 -1.481 -0.923 1.746 sum 6.284 -30.876 0.540 31.514 Atomic orbital electron populations 1.70995 1.07104 1.28073 1.55688 1.27197 0.97109 1.04596 1.00084 0.82647 0.73435 0.71668 0.77152 1.21708 1.20059 1.20761 1.20382 0.92364 0.86869 1.47366 0.91580 1.42422 1.04754 1.01209 1.89009 1.21361 0.95557 0.85231 0.91657 0.91803 1.22993 0.99743 0.93043 1.01506 1.22080 0.97169 0.95628 0.83823 1.48423 1.52420 1.08051 1.23622 1.18177 0.78232 0.85847 0.82122 1.90737 1.49303 1.76530 1.28925 1.20965 0.98311 0.92859 0.93197 1.21778 0.99517 0.94711 1.00373 1.21860 0.95231 0.94335 0.95716 1.19328 0.98864 0.96328 0.95716 1.21386 0.99524 0.92521 0.98622 1.21488 0.95281 1.01896 0.93331 1.21371 0.97271 0.92152 1.00479 1.21086 0.99386 0.96965 0.95037 1.19373 0.98585 0.88085 0.96773 1.68002 1.16066 1.14998 1.16965 1.23045 1.00122 0.78863 1.01349 0.94338 0.80171 0.88244 0.90769 0.89661 0.90006 0.83473 0.79806 0.81936 0.81907 0.82215 0.84059 0.93050 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.92 13.70 21.65 0.30 -60.62 16 2 C -0.10 -5.74 5.50 84.86 0.47 -5.28 16 3 Si 1.13 52.62 29.92 68.60 2.05 54.67 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.34 -19.24 9.96 84.03 0.84 -18.41 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -37.18 5.24 -316.40 -1.66 -38.84 16 10 C 0.17 7.10 3.71 46.39 0.17 7.27 16 11 H 0.06 2.69 8.09 -2.39 -0.02 2.67 16 12 C -0.13 -4.23 6.60 31.78 0.21 -4.02 16 13 C 0.14 3.96 5.39 86.73 0.47 4.43 16 14 N -0.59 -21.38 3.33 -814.72 -2.71 -24.09 16 15 C 0.57 20.84 7.84 86.91 0.68 21.52 16 16 O -0.58 -24.53 16.54 -3.71 -0.06 -24.59 16 17 C 0.10 2.91 6.73 42.30 0.28 3.20 16 18 C -0.14 -3.36 9.54 22.36 0.21 -3.15 16 19 C -0.05 -0.74 9.88 22.48 0.22 -0.52 16 20 C -0.10 -1.69 5.75 -21.22 -0.12 -1.82 16 21 C -0.10 -0.99 9.77 22.31 0.22 -0.77 16 22 C -0.10 -0.76 9.96 22.07 0.22 -0.54 16 23 C -0.09 -0.89 9.94 22.04 0.22 -0.67 16 24 C -0.11 -1.69 9.99 22.38 0.22 -1.47 16 25 C 0.10 2.05 6.61 40.47 0.27 2.31 16 26 N -0.45 -11.89 6.76 -177.77 -1.20 -13.10 16 27 C 0.09 3.83 6.60 86.85 0.57 4.40 16 28 H 0.25 15.28 6.77 -92.71 -0.63 14.66 16 29 H 0.37 19.05 6.59 -92.71 -0.61 18.44 16 30 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 32 H 0.09 2.33 7.40 -2.39 -0.02 2.31 16 33 H 0.08 2.25 7.53 -2.39 -0.02 2.23 16 34 H 0.15 3.41 7.60 -2.91 -0.02 3.38 16 35 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 37 H 0.16 0.13 8.06 -2.92 -0.02 0.11 16 38 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.05 2.33 8.04 -2.39 -0.02 2.31 16 Total: -1.00 -76.95 344.98 2.46 -74.49 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.59 Total: 25.57 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.15 Total: 6.50 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -5.27 Total: -136.65 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.05 Total: 54.67 kcal Total: -76.95 2.46 -74.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019694521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.444 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds