Wall clock time and date at job start Fri Apr 10 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48492 * 109.46903 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47033 * 299.99799 * 3 2 1 6 6 H 1.48503 * 109.47168 * 59.99624 * 3 2 1 7 7 C 1.38810 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99519 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00228 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.91445 * 31.10524 * 10 9 7 12 12 C 1.55156 * 111.00358 * 155.00227 * 10 9 7 13 13 C 1.54324 * 103.10221 * 153.66643 * 12 10 9 14 14 N 1.47022 * 107.26935 * 337.71843 * 13 12 10 15 15 C 1.34782 * 125.64772 * 178.90451 * 14 13 12 16 16 O 1.21601 * 119.99761 * 175.16821 * 15 14 13 17 17 C 1.47452 * 120.00149 * 355.16163 * 15 14 13 18 18 C 1.38866 * 120.45583 * 48.45604 * 17 15 14 19 19 C 1.38905 * 120.67272 * 179.71848 * 18 17 15 20 20 C 1.36375 * 121.27142 * 0.56485 * 19 18 17 21 21 C 1.40402 * 119.98389 * 359.72238 * 20 19 18 22 22 C 1.40464 * 121.94618 * 179.97438 * 21 20 19 23 23 N 1.31282 * 119.88195 * 180.02562 * 22 21 20 24 24 C 1.32560 * 122.73001 * 359.97438 * 23 22 21 25 25 C 1.36326 * 121.82015 * 0.02562 * 24 23 22 26 26 C 1.40288 * 118.70477 * 359.97438 * 25 24 23 27 27 C 1.47420 * 108.70490 * 358.94152 * 14 13 12 28 28 H 0.97000 * 120.00220 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00094 * 0.02562 * 9 7 2 30 30 H 1.09000 * 110.72062 * 35.21378 * 12 10 9 31 31 H 1.08995 * 110.72458 * 272.11741 * 12 10 9 32 32 H 1.09004 * 109.88396 * 97.13391 * 13 12 10 33 33 H 1.08998 * 109.88702 * 218.14903 * 13 12 10 34 34 H 1.07991 * 119.66549 * 359.97438 * 18 17 15 35 35 H 1.07998 * 119.36079 * 180.28578 * 19 18 17 36 36 H 1.07997 * 120.00648 * 179.74333 * 20 19 18 37 37 H 1.07997 * 120.06438 * 0.02562 * 22 21 20 38 38 H 1.07994 * 119.08775 * 180.02562 * 24 23 22 39 39 H 1.07999 * 120.64703 * 179.97438 * 25 24 23 40 40 H 1.09000 * 110.37232 * 142.96702 * 27 14 13 41 41 H 1.09001 * 110.36695 * 265.17898 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0016 11 1 3.0082 -3.5575 0.5268 12 6 1.1999 -4.7945 0.6149 13 6 1.7695 -6.0625 -0.0553 14 7 2.4286 -5.6399 -1.2998 15 6 3.0694 -6.4517 -2.1641 16 8 3.5037 -6.0060 -3.2088 17 6 3.2438 -7.8802 -1.8429 18 6 2.1671 -8.6397 -1.4046 19 6 2.3250 -9.9871 -1.1063 20 6 3.5375 -10.6005 -1.2226 21 6 4.6549 -9.8695 -1.6567 22 6 5.9226 -10.4594 -1.7907 23 7 6.9400 -9.7375 -2.1996 24 6 6.8312 -8.4510 -2.5001 25 6 5.6440 -7.7880 -2.4025 26 6 4.5111 -8.4944 -1.9718 27 6 2.2733 -4.1812 -1.4452 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0016 30 1 0.1480 -4.6635 0.3611 31 1 1.3319 -4.8373 1.6960 32 1 2.4949 -6.5372 0.6056 33 1 0.9612 -6.7586 -0.2792 34 1 1.1961 -8.1791 -1.2985 35 1 1.4722 -10.5589 -0.7715 36 1 3.6380 -11.6483 -0.9813 37 1 6.0601 -11.5050 -1.5579 38 1 7.7072 -7.9133 -2.8315 39 1 5.5770 -6.7393 -2.6519 40 1 3.1742 -3.7448 -1.8764 41 1 1.4071 -3.9519 -2.0659 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019773547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:51 Heat of formation + Delta-G solvation = 20.609836 kcal Electronic energy + Delta-G solvation = -24742.796958 eV Core-core repulsion = 21200.998134 eV Total energy + Delta-G solvation = -3541.798824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.13249 -40.82372 -38.77446 -38.13233 -36.00650 -34.06474 -33.41287 -32.25022 -31.29686 -30.78403 -29.05428 -26.34709 -25.45969 -24.56689 -24.53821 -23.30617 -21.75753 -20.62921 -19.41862 -19.20870 -18.44141 -17.81339 -17.56769 -17.24167 -16.67720 -16.37185 -15.75498 -15.58753 -15.33531 -15.19807 -14.98900 -14.81716 -14.66787 -14.34769 -13.91240 -13.86563 -13.60491 -13.18189 -13.07921 -12.98834 -12.83497 -12.60860 -12.46884 -12.37596 -12.09941 -11.82256 -11.60997 -11.30854 -11.10233 -11.01351 -10.53979 -10.14677 -9.78984 -9.12669 -9.11273 -8.00915 -5.30940 -0.83129 -0.15866 0.62953 1.44906 1.46733 1.51195 1.56059 1.82352 2.09094 2.52296 3.02555 3.24330 3.34041 3.45805 3.60121 3.60756 3.75069 3.81537 3.86510 3.95183 4.03397 4.14874 4.22344 4.30168 4.36691 4.49317 4.52796 4.63280 4.72203 4.73605 4.80591 4.88413 4.95221 5.06484 5.12877 5.17149 5.28045 5.31606 5.35063 5.48791 5.59574 5.77979 6.21128 6.40494 6.91826 6.93880 7.28667 7.98994 8.23754 9.21805 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002997 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.214675 B = 9339.122700 C =10123.172720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.064 0.936 12 C -0.129 4.129 13 C 0.104 3.896 14 N -0.605 5.605 15 C 0.566 3.434 16 O -0.585 6.585 17 C -0.149 4.149 18 C -0.047 4.047 19 C -0.124 4.124 20 C -0.044 4.044 21 C -0.131 4.131 22 C 0.158 3.842 23 N -0.513 5.513 24 C 0.078 3.922 25 C -0.178 4.178 26 C -0.008 4.008 27 C 0.091 3.909 28 H 0.253 0.747 29 H 0.379 0.621 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.210 0.790 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -28.006 2.111 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.359 5.359 10 C 0.056 3.944 11 H 0.082 0.918 12 C -0.168 4.168 13 C -0.017 4.017 14 N -0.337 5.337 15 C 0.357 3.643 16 O -0.466 6.466 17 C -0.153 4.153 18 C -0.067 4.067 19 C -0.141 4.141 20 C -0.064 4.064 21 C -0.133 4.133 22 C -0.014 4.014 23 N -0.221 5.221 24 C -0.064 4.064 25 C -0.198 4.198 26 C -0.014 4.014 27 C -0.035 4.035 28 H 0.062 0.938 29 H 0.212 0.788 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.202 0.798 37 H 0.226 0.774 38 H 0.182 0.818 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.111 -27.890 1.417 28.587 hybrid contribution -0.716 2.469 -0.557 2.631 sum 5.395 -25.421 0.860 26.001 Atomic orbital electron populations 1.69796 1.06425 1.26212 1.58871 1.25515 0.96373 1.00931 1.03172 0.85140 0.78215 0.80025 0.76766 1.19362 1.22202 1.21561 1.19631 0.91406 0.85188 1.41848 0.90864 1.42407 1.05565 1.00353 1.87608 1.21528 0.95703 0.85745 0.91467 0.91841 1.22884 1.00007 0.92385 1.01483 1.22389 0.97629 0.97587 0.84133 1.48493 1.53626 1.08069 1.23514 1.18349 0.77051 0.86456 0.82478 1.90764 1.52035 1.77598 1.26203 1.19648 0.95518 0.92325 1.07760 1.21901 0.97768 0.95272 0.91729 1.21307 0.99589 0.93306 0.99900 1.21696 0.90215 1.01622 0.92858 1.19291 0.97919 0.92474 1.03636 1.23996 0.85897 1.01065 0.90395 1.67523 1.34635 1.07405 1.12568 1.22395 0.97211 0.90653 0.96170 1.21984 0.94219 1.01471 1.02142 1.18086 0.92572 0.94220 0.96508 1.23123 0.99800 0.79081 1.01487 0.93797 0.78775 0.90259 0.88073 0.89489 0.88176 0.83189 0.80584 0.79793 0.77382 0.81831 0.86496 0.93849 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.56 13.06 21.65 0.28 -57.28 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 3 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.25 -13.61 9.96 84.03 0.84 -12.77 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -34.94 5.26 -315.60 -1.66 -36.59 16 10 C 0.17 6.30 3.74 46.55 0.17 6.47 16 11 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 12 C -0.13 -3.45 6.58 31.78 0.21 -3.24 16 13 C 0.10 2.30 5.67 86.73 0.49 2.79 16 14 N -0.60 -18.95 3.33 -814.67 -2.71 -21.66 16 15 C 0.57 19.05 6.85 86.67 0.59 19.64 16 16 O -0.58 -24.86 15.72 -4.03 -0.06 -24.92 16 17 C -0.15 -3.80 5.42 -19.92 -0.11 -3.91 16 18 C -0.05 -0.76 8.51 22.58 0.19 -0.57 16 19 C -0.12 -1.11 9.92 21.99 0.22 -0.90 16 20 C -0.04 -0.40 9.79 22.36 0.22 -0.18 16 21 C -0.13 -2.27 5.74 -21.33 -0.12 -2.39 16 22 C 0.16 2.48 11.05 85.32 0.94 3.43 16 23 N -0.51 -11.39 10.30 -195.40 -2.01 -13.41 16 24 C 0.08 1.91 11.07 84.14 0.93 2.84 16 25 C -0.18 -5.09 9.25 22.32 0.21 -4.88 16 26 C -0.01 -0.21 5.76 -21.12 -0.12 -0.33 16 27 C 0.09 3.53 6.61 87.02 0.58 4.10 16 28 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.38 19.41 7.76 -92.71 -0.72 18.69 16 30 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 31 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.10 1.57 6.06 -2.39 -0.01 1.55 16 34 H 0.15 1.91 6.03 -2.92 -0.02 1.89 16 35 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 37 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.12 3.91 6.38 -2.91 -0.02 3.89 16 40 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -77.72 343.17 1.92 -75.80 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.35 Total: 23.34 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.71 Total: 6.79 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -6.10 Total: -128.94 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.06 Total: -24.92 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.72 1.92 -75.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019773547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.410 kcal (2) G-P(sol) polarization free energy of solvation -77.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds