Wall clock time and date at job start Fri Apr 10 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99889 * 2 1 4 4 O 1.21582 * 119.99845 * 359.97438 * 3 2 1 5 5 C 1.47664 * 120.00166 * 180.02562 * 3 2 1 6 6 C 1.39796 * 119.99653 * 179.97438 * 5 3 2 7 7 C 1.36601 * 120.00484 * 179.97438 * 6 5 3 8 8 C 1.39836 * 119.99390 * 0.02562 * 7 6 5 9 9 C 1.47688 * 120.00274 * 179.97438 * 8 7 6 10 10 C 1.39243 * 120.22778 * 310.00151 * 9 8 7 11 11 C 1.37917 * 120.16750 * 180.02562 * 10 9 8 12 12 C 1.39489 * 120.62288 * 0.23459 * 11 10 9 13 13 O 1.35851 * 119.77375 * 179.72453 * 12 11 10 14 14 C 1.42897 * 116.99911 * 359.97438 * 13 12 11 15 15 C 1.37965 * 120.44686 * 359.47823 * 12 11 10 16 16 C 1.40635 * 119.82191 * 0.54276 * 15 12 11 17 17 C 1.40844 * 120.31043 * 179.73942 * 16 15 12 18 18 H 1.07994 * 120.00537 * 154.02448 * 17 16 15 19 19 C 1.40128 * 119.99589 * 334.03022 * 17 16 15 20 20 N 1.30735 * 119.99864 * 344.28535 * 19 17 16 21 21 Si 1.86804 * 120.00011 * 164.29091 * 19 17 16 22 22 H 1.48497 * 109.47288 * 59.99580 * 21 19 17 23 23 H 1.48496 * 109.46905 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46914 * 299.99755 * 21 19 17 25 25 C 1.39839 * 119.99060 * 0.25404 * 8 7 6 26 26 C 1.36593 * 119.99544 * 359.50874 * 25 8 7 27 27 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47770 * 300.00117 * 1 2 3 29 29 H 1.09006 * 109.47221 * 60.00642 * 1 2 3 30 30 H 0.97004 * 120.00020 * 179.97438 * 2 1 3 31 31 H 1.08004 * 120.00133 * 359.97438 * 6 5 3 32 32 H 1.08007 * 120.00282 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.91447 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.68967 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47140 * 60.00652 * 14 13 12 36 36 H 1.09006 * 109.46667 * 179.97438 * 14 13 12 37 37 H 1.08993 * 109.47375 * 300.00049 * 14 13 12 38 38 H 1.08001 * 120.08635 * 180.25782 * 15 12 11 39 39 H 0.97002 * 119.99621 * 180.02562 * 20 19 17 40 40 H 1.08007 * 119.99756 * 179.74345 * 25 8 7 41 41 H 1.07999 * 119.99724 * 180.21466 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 6 3.6155 1.1673 -0.0006 6 6 4.3143 2.3780 -0.0011 7 6 5.6803 2.3783 -0.0011 8 6 6.3796 1.1673 -0.0011 9 6 7.8565 1.1674 -0.0017 10 6 8.5571 1.9406 -0.9237 11 6 9.9363 1.9393 -0.9235 12 6 10.6459 1.1633 -0.0070 13 8 12.0043 1.1707 -0.0258 14 6 12.6350 1.9938 -1.0090 15 6 9.9777 0.3922 0.9216 16 6 8.5715 0.3790 0.9378 17 6 7.8788 -0.4086 1.8778 18 1 6.8813 -0.1310 2.1846 19 6 8.4842 -1.5525 2.4151 20 7 9.5402 -2.0648 1.8393 21 14 7.7821 -2.3455 3.9538 22 1 6.3814 -2.7673 3.6983 23 1 8.5979 -3.5326 4.3151 24 1 7.8085 -1.3675 5.0708 25 6 5.6803 -0.0436 -0.0065 26 6 4.3144 -0.0435 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 3.7742 3.3133 -0.0015 32 1 6.2202 3.3137 -0.0011 33 1 8.0191 2.5428 -1.6409 34 1 10.4719 2.5416 -1.6424 35 1 12.3386 3.0318 -0.8582 36 1 13.7175 1.9081 -0.9143 37 1 12.3301 1.6698 -2.0040 38 1 10.5330 -0.2032 1.6312 39 1 9.9590 -2.8568 2.2111 40 1 6.2203 -0.9790 -0.0107 41 1 3.7743 -0.9787 -0.0022 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240567708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:13 Heat of formation + Delta-G solvation = -35.471771 kcal Electronic energy + Delta-G solvation = -24598.366530 eV Core-core repulsion = 21021.843074 eV Total energy + Delta-G solvation = -3576.523456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -39.86375 -38.92379 -37.99849 -36.20140 -34.57032 -33.74957 -31.50769 -30.68304 -29.77391 -28.59883 -27.08432 -25.97076 -25.31986 -23.05613 -21.96246 -20.98720 -20.54183 -19.65386 -18.00654 -17.76098 -16.25238 -15.94459 -15.67231 -15.23081 -15.07252 -14.90546 -14.80653 -14.52477 -14.00209 -13.53332 -13.24998 -13.08207 -12.96854 -12.87592 -12.58112 -12.33855 -12.12271 -11.95123 -11.71096 -11.47164 -11.27327 -11.20184 -10.90865 -10.60239 -10.50797 -10.10938 -9.99969 -9.68737 -9.66012 -9.29915 -9.13310 -8.52144 -8.20685 -7.63299 -7.04812 -6.74768 -4.56596 1.25044 2.02265 2.63306 2.78158 2.98150 3.00405 3.11634 3.32070 3.33195 3.79437 4.22368 4.40695 4.48861 4.93550 5.19304 5.27952 5.42016 5.42316 5.51814 5.59048 5.67432 5.68572 5.73387 5.85304 5.94936 6.00605 6.09836 6.24619 6.36783 6.46123 6.60769 6.70714 6.82346 6.87132 6.91099 7.06587 7.26403 7.29285 7.46703 7.57192 7.57497 7.68942 7.84782 7.91069 8.22343 8.36525 8.60164 8.67330 8.76449 9.97624 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004265 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.907141 B = 6563.780967 C = 8440.695559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.738 5.738 3 C 0.565 3.435 4 O -0.551 6.551 5 C -0.179 4.179 6 C -0.055 4.055 7 C -0.146 4.146 8 C 0.062 3.938 9 C -0.220 4.220 10 C -0.035 4.035 11 C -0.317 4.317 12 C 0.136 3.864 13 O -0.329 6.329 14 C 0.036 3.964 15 C -0.194 4.194 16 C 0.159 3.841 17 C -0.445 4.445 18 H 0.087 0.913 19 C 0.077 3.923 20 N -0.775 5.775 21 Si 0.907 3.093 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.112 4.112 26 C -0.087 4.087 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.402 0.598 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.129 0.871 39 H 0.285 0.715 40 H 0.136 0.864 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 0.068 -2.908 6.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.391 5.391 3 C 0.355 3.645 4 O -0.430 6.430 5 C -0.182 4.182 6 C -0.074 4.074 7 C -0.165 4.165 8 C 0.062 3.938 9 C -0.222 4.222 10 C -0.053 4.053 11 C -0.336 4.336 12 C 0.092 3.908 13 O -0.243 6.243 14 C -0.060 4.060 15 C -0.214 4.214 16 C 0.156 3.844 17 C -0.473 4.473 18 H 0.105 0.895 19 C -0.144 4.144 20 N -0.399 5.399 21 Si 0.730 3.270 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.130 4.130 26 C -0.106 4.106 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.237 0.763 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.223 0.494 -2.776 6.833 hybrid contribution 0.007 -0.726 0.404 0.831 sum -6.216 -0.232 -2.372 6.658 Atomic orbital electron populations 1.21485 0.79902 1.01902 1.02148 1.45742 1.07497 1.09026 1.76821 1.18461 0.87781 0.83248 0.75044 1.90720 1.70369 1.31319 1.50582 1.19623 0.91419 0.94819 1.12375 1.20756 0.93918 0.96902 0.95862 1.21062 0.93377 0.98115 1.03896 1.19073 0.93288 0.91891 0.89561 1.18556 0.89835 1.10440 1.03322 1.20360 0.92969 0.95693 0.96267 1.20383 0.94621 1.11506 1.07119 1.19043 0.80296 0.95751 0.95675 1.86005 1.18934 1.64814 1.54535 1.22775 0.97123 0.94307 0.91762 1.20573 0.93811 1.04823 1.02197 1.17188 0.90335 0.87928 0.88991 1.19588 1.02066 1.06174 1.19483 0.89516 1.26003 0.94104 0.96905 0.97371 1.69778 1.16844 1.17768 1.35464 0.86368 0.79981 0.78825 0.81777 1.18698 1.20154 1.18574 1.21161 0.92894 0.99206 0.99727 1.20843 0.94839 0.95924 0.98958 0.90868 0.92392 0.92403 0.76294 0.85809 0.86032 0.88674 0.88417 0.93635 0.89842 0.93586 0.85350 0.90334 0.84641 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.70 59.84 0.64 1.52 16 2 N -0.74 -8.99 5.66 -68.10 -0.39 -9.38 16 3 C 0.56 9.14 7.77 -12.41 -0.10 9.04 16 4 O -0.55 -10.53 16.33 5.29 0.09 -10.45 16 5 C -0.18 -2.99 5.88 -104.88 -0.62 -3.61 16 6 C -0.06 -0.96 9.53 -39.59 -0.38 -1.34 16 7 C -0.15 -2.65 9.45 -39.58 -0.37 -3.02 16 8 C 0.06 1.25 4.92 -104.84 -0.52 0.73 16 9 C -0.22 -4.93 5.52 -104.24 -0.58 -5.51 16 10 C -0.03 -0.73 9.48 -39.33 -0.37 -1.10 16 11 C -0.32 -6.72 9.02 -39.23 -0.35 -7.08 16 12 C 0.14 3.16 6.68 -39.22 -0.26 2.89 16 13 O -0.33 -6.95 10.48 -19.27 -0.20 -7.15 16 14 C 0.04 0.56 9.80 101.05 0.99 1.55 16 15 C -0.19 -4.88 8.60 -38.78 -0.33 -5.21 16 16 C 0.16 3.90 5.56 -106.58 -0.59 3.30 16 17 C -0.45 -10.66 7.14 -37.89 -0.27 -10.93 16 18 H 0.09 2.03 6.59 -52.49 -0.35 1.69 16 19 C 0.08 1.77 5.17 -17.31 -0.09 1.68 16 20 N -0.78 -18.60 10.92 55.56 0.61 -17.99 16 21 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.11 -2.09 7.92 -39.58 -0.31 -2.41 16 26 C -0.09 -1.38 9.48 -39.59 -0.38 -1.76 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.40 3.94 6.84 -40.82 -0.28 3.67 16 31 H 0.12 2.04 7.64 -52.48 -0.40 1.64 16 32 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 33 H 0.10 1.77 8.03 -52.49 -0.42 1.35 16 34 H 0.10 1.82 6.25 -52.49 -0.33 1.49 16 35 H 0.05 0.65 7.64 -51.93 -0.40 0.26 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.67 7.65 -51.93 -0.40 0.28 16 38 H 0.13 3.39 6.18 -52.49 -0.32 3.07 16 39 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 40 H 0.14 2.66 7.31 -52.48 -0.38 2.28 16 41 H 0.11 1.41 6.38 -52.49 -0.34 1.08 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -28.83 346.34 -8.45 -37.28 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.86 Total: 11.31 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.89 Total: -21.24 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.22 Total: -27.37 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.12 Total: -17.60 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.83 -8.45 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240567708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.810 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds