Wall clock time and date at job start Fri Apr 10 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99764 * 2 1 4 4 H 1.48499 * 109.47282 * 267.51254 * 3 2 1 5 5 H 1.48505 * 109.47222 * 27.51151 * 3 2 1 6 6 H 1.48504 * 109.47271 * 147.51398 * 3 2 1 7 7 C 1.39937 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00257 * 341.64638 * 7 2 1 9 9 C 1.41439 * 119.99631 * 161.65057 * 7 2 1 10 10 C 1.40784 * 120.17631 * 317.26397 * 9 7 2 11 11 C 1.37715 * 120.04067 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41512 * 359.70625 * 11 10 9 13 13 C 1.39895 * 120.35598 * 0.55091 * 12 11 10 14 14 C 1.47847 * 120.02945 * 179.75039 * 13 12 11 15 15 O 1.21559 * 119.99903 * 208.58586 * 14 13 12 16 16 N 1.34774 * 120.00140 * 28.57864 * 14 13 12 17 17 C 1.46504 * 119.99914 * 4.91260 * 16 14 13 18 18 C 1.53000 * 109.47103 * 249.80382 * 17 16 14 19 19 N 1.46903 * 109.47019 * 180.02562 * 18 17 16 20 20 C 1.39877 * 120.00288 * 184.91251 * 16 14 13 21 21 C 1.39298 * 120.48849 * 7.00878 * 20 16 14 22 22 C 1.38503 * 118.36056 * 179.78071 * 21 20 16 23 23 C 1.38273 * 119.23238 * 0.49322 * 22 21 20 24 24 N 1.31857 * 120.92967 * 359.74531 * 23 22 21 25 25 C 1.31813 * 121.79387 * 0.02562 * 24 23 22 26 26 C 1.39048 * 119.94477 * 359.46809 * 13 12 11 27 27 H 0.96999 * 120.00329 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.98005 * 0.03138 * 10 9 7 29 29 H 1.08002 * 119.79441 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.82459 * 180.30534 * 12 11 10 31 31 H 1.08997 * 109.46859 * 129.80676 * 17 16 14 32 32 H 1.08999 * 109.46967 * 9.80365 * 17 16 14 33 33 H 1.08999 * 109.47195 * 299.99843 * 18 17 16 34 34 H 1.08997 * 109.47023 * 60.00395 * 18 17 16 35 35 H 1.00895 * 110.99936 * 180.02562 * 19 18 17 36 36 H 1.00907 * 111.00075 * 303.95420 * 19 18 17 37 37 H 1.08004 * 120.82072 * 359.97438 * 21 20 16 38 38 H 1.07996 * 120.38279 * 180.23388 * 22 21 20 39 39 H 1.07998 * 119.53487 * 179.76809 * 23 22 21 40 40 H 1.08003 * 119.66890 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.20302 * 180.22705 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.5423 2.0161 -1.3987 5 1 1.4143 2.6673 0.6467 6 1 3.5125 1.4560 0.7520 7 6 2.0080 -1.2119 0.0005 8 1 1.5092 -2.1233 0.2954 9 6 3.3684 -1.2431 -0.3851 10 6 3.8042 -0.5066 -1.5030 11 6 5.1294 -0.5394 -1.8763 12 6 6.0419 -1.2889 -1.1551 13 6 5.6265 -2.0315 -0.0446 14 6 6.6067 -2.8341 0.7175 15 8 6.2468 -3.8360 1.3044 16 7 7.8993 -2.4551 0.7615 17 6 8.3137 -1.1922 0.1454 18 6 9.1570 -1.4835 -1.0975 19 7 9.5730 -0.2171 -1.7149 20 6 8.8453 -3.2676 1.3952 21 6 8.4937 -4.5344 1.8559 22 6 9.4664 -5.3034 2.4728 23 6 10.7415 -4.7891 2.6195 24 7 11.0412 -3.5838 2.1767 25 6 10.1471 -2.8210 1.5800 26 6 4.2920 -2.0093 0.3453 27 1 -0.4850 0.8400 -0.0004 28 1 3.0989 0.0846 -2.0681 29 1 5.4593 0.0268 -2.7348 30 1 7.0798 -1.3039 -1.4533 31 1 8.9042 -0.6168 0.8584 32 1 7.4308 -0.6204 -0.1403 33 1 10.0399 -2.0553 -0.8118 34 1 8.5664 -2.0589 -1.8105 35 1 10.1313 -0.3827 -2.5387 36 1 8.7737 0.3601 -1.9301 37 1 7.4882 -4.9088 1.7321 38 1 9.2306 -6.2917 2.8388 39 1 11.5028 -5.3832 3.1032 40 1 10.4299 -1.8388 1.2309 41 1 3.9674 -2.5781 1.2041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188688114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:36 Heat of formation + Delta-G solvation = 61.583149 kcal Electronic energy + Delta-G solvation = -25304.214662 eV Core-core repulsion = 21764.192575 eV Total energy + Delta-G solvation = -3540.022088 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24088 -39.35102 -37.61708 -36.87332 -34.26732 -33.73906 -32.22289 -31.35326 -30.40028 -29.62310 -27.99099 -25.56810 -24.16103 -23.58788 -22.77357 -21.78051 -20.98058 -19.81938 -17.92984 -17.45822 -17.07397 -16.67163 -16.40242 -15.73347 -15.58062 -15.22464 -14.84351 -14.54294 -14.32272 -13.90994 -13.69602 -13.65155 -13.43100 -13.12353 -12.93659 -12.82695 -12.57277 -12.12742 -11.94679 -11.68975 -11.47103 -11.11284 -10.85830 -10.67680 -10.54444 -10.24336 -9.98423 -9.88956 -9.60252 -9.32121 -8.99072 -8.96327 -8.24389 -7.97981 -7.78433 -7.02198 -4.65824 1.00971 1.32901 1.75011 2.27798 2.71358 2.98978 3.07319 3.10356 3.21696 3.86730 3.87550 4.28281 4.33738 4.47223 4.67199 4.71590 4.86898 4.92663 5.03987 5.08581 5.19451 5.27300 5.39110 5.52365 5.57188 5.68514 5.78847 5.85913 6.03357 6.25614 6.27006 6.34269 6.40971 6.49502 6.78905 6.81369 6.93265 7.04826 7.11687 7.15847 7.25135 7.29836 7.62347 7.75369 7.95060 8.20296 8.21347 8.39507 8.63741 10.01134 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.003941 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.811121 B = 7103.079186 C = 8029.558971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.088 3.912 3 Si 0.899 3.101 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.462 4.462 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.196 4.196 11 C -0.090 4.090 12 C -0.228 4.228 13 C -0.115 4.115 14 C 0.568 3.432 15 O -0.518 6.518 16 N -0.543 5.543 17 C 0.069 3.931 18 C 0.038 3.962 19 N -0.845 5.845 20 C 0.114 3.886 21 C -0.123 4.123 22 C -0.148 4.148 23 C 0.057 3.943 24 N -0.463 5.463 25 C 0.056 3.944 26 C -0.125 4.125 27 H 0.285 0.715 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.346 0.654 36 H 0.346 0.654 37 H 0.185 0.815 38 H 0.135 0.865 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.925 -1.350 -1.339 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.174 1.174 7 C -0.491 4.491 8 H 0.113 0.887 9 C 0.082 3.918 10 C -0.215 4.215 11 C -0.109 4.109 12 C -0.247 4.247 13 C -0.118 4.118 14 C 0.362 3.638 15 O -0.395 6.395 16 N -0.265 5.265 17 C -0.053 4.053 18 C -0.093 4.093 19 N -0.376 5.376 20 C 0.016 3.984 21 C -0.150 4.150 22 C -0.168 4.168 23 C -0.101 4.101 24 N -0.171 5.171 25 C -0.104 4.104 26 C -0.145 4.145 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.201 0.799 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.596 -1.282 -0.240 16.647 hybrid contribution -1.110 0.124 -0.963 1.475 sum 15.486 -1.158 -1.203 15.576 Atomic orbital electron populations 1.69691 1.08001 1.30233 1.35461 1.26015 0.94627 1.01214 0.91199 0.86449 0.80888 0.80298 0.80000 1.18795 1.20953 1.17421 1.19367 0.92771 0.96458 1.40469 0.88711 1.17722 0.93325 0.90665 0.90063 1.21512 0.95458 1.06154 0.98401 1.20635 0.93571 0.98464 0.98202 1.21118 0.99159 1.04668 0.99798 1.19286 0.93545 1.00911 0.98044 1.19143 0.80811 0.84601 0.79285 1.90435 1.78302 1.26198 1.44575 1.45393 1.06940 1.21183 1.52935 1.22598 1.02802 0.84927 0.94962 1.22222 0.99226 0.92020 0.95851 1.58617 1.26903 1.16832 1.35239 1.19118 0.90678 0.91896 0.96668 1.22976 1.03636 0.92052 0.96379 1.22161 0.93895 1.01042 0.99736 1.22632 0.95711 0.92606 0.99109 1.67609 1.35201 1.05643 1.08692 1.22547 0.88156 1.00145 0.99589 1.21469 0.90092 1.03043 0.99913 0.90398 0.87316 0.87901 0.86354 0.89703 0.84737 0.90332 0.94117 0.84101 0.84163 0.79874 0.84727 0.83080 0.82480 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.79 13.93 55.55 0.77 -20.02 16 2 C 0.09 2.19 5.36 -17.34 -0.09 2.09 16 3 Si 0.90 19.20 25.37 -169.99 -4.31 14.89 16 4 H -0.26 -5.35 6.73 56.52 0.38 -4.97 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.25 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -11.84 9.49 -37.73 -0.36 -12.20 16 8 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.09 1.99 4.71 -106.87 -0.50 1.48 16 10 C -0.20 -4.15 7.43 -38.81 -0.29 -4.44 16 11 C -0.09 -1.62 10.01 -39.72 -0.40 -2.02 16 12 C -0.23 -3.91 7.40 -38.91 -0.29 -4.20 16 13 C -0.11 -2.24 5.46 -105.04 -0.57 -2.81 16 14 C 0.57 10.46 7.37 -12.33 -0.09 10.37 16 15 O -0.52 -10.47 13.20 5.31 0.07 -10.39 16 16 N -0.54 -8.26 2.78 -114.38 -0.32 -8.58 16 17 C 0.07 0.86 4.49 -4.04 -0.02 0.85 16 18 C 0.04 0.41 5.83 -3.82 -0.02 0.39 16 19 N -0.85 -7.45 9.62 -10.37 -0.10 -7.55 16 20 C 0.11 1.69 6.28 -83.56 -0.52 1.17 16 21 C -0.12 -1.84 9.08 -39.09 -0.35 -2.20 16 22 C -0.15 -1.80 10.10 -39.47 -0.40 -2.20 16 23 C 0.06 0.68 11.18 -17.53 -0.20 0.49 16 24 N -0.46 -6.35 10.35 -13.08 -0.14 -6.49 16 25 C 0.06 0.76 9.39 -17.33 -0.16 0.59 16 26 C -0.13 -2.77 9.34 -38.44 -0.36 -3.13 16 27 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 28 H 0.11 2.30 6.29 -52.49 -0.33 1.97 16 29 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.66 3.08 -52.49 -0.16 1.49 16 31 H 0.08 0.98 7.13 -51.93 -0.37 0.61 16 32 H 0.14 1.83 4.10 -51.93 -0.21 1.62 16 33 H 0.08 0.85 6.40 -51.93 -0.33 0.52 16 34 H 0.04 0.47 6.85 -51.93 -0.36 0.11 16 35 H 0.35 2.47 9.08 -39.29 -0.36 2.11 16 36 H 0.35 2.87 8.99 -39.29 -0.35 2.52 16 37 H 0.18 3.07 4.81 -54.69 -0.26 2.81 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.16 1.87 5.87 -52.48 -0.31 1.56 16 41 H 0.12 2.61 7.90 -52.49 -0.41 2.20 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -27.63 330.13 -7.98 -35.61 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.30 Total: 13.32 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -4.63 Total: -15.77 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.22 Total: -42.64 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.31 Total: 14.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.63 -7.98 -35.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.194 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds