Wall clock time and date at job start Fri Apr 10 2020 22:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48506 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47110 * 299.99988 * 3 2 1 6 6 H 1.48494 * 109.47502 * 60.00312 * 3 2 1 7 7 C 1.37877 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00141 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99666 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00064 * 270.00315 * 10 9 7 12 12 C 1.50701 * 109.47035 * 269.99985 * 11 10 9 13 13 C 1.38233 * 119.99697 * 269.72361 * 12 11 10 14 14 C 1.38242 * 119.99500 * 179.77305 * 13 12 11 15 15 C 1.38230 * 120.00073 * 0.49980 * 14 13 12 16 16 C 1.38238 * 120.00019 * 359.75524 * 15 14 13 17 17 C 1.38231 * 119.99813 * 90.00442 * 12 11 10 18 18 C 1.34772 * 120.00187 * 90.00500 * 10 9 7 19 19 O 1.21578 * 120.00438 * 180.02562 * 18 10 9 20 20 N 1.34781 * 120.00026 * 359.97438 * 18 10 9 21 21 C 1.39391 * 120.00057 * 185.08628 * 20 18 10 22 22 C 1.39050 * 119.69206 * 174.84078 * 21 20 18 23 23 C 1.38348 * 119.09519 * 180.02562 * 22 21 20 24 24 C 1.38842 * 118.50359 * 359.97438 * 23 22 21 25 25 C 1.38064 * 119.30603 * 0.27828 * 24 23 22 26 26 N 1.31943 * 120.85111 * 359.44843 * 25 24 23 27 27 H 0.96997 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47275 * 60.00562 * 9 7 2 29 29 H 1.08994 * 109.47903 * 300.00620 * 9 7 2 30 30 H 1.09004 * 109.46949 * 30.00045 * 11 10 9 31 31 H 1.08996 * 109.47321 * 149.99682 * 11 10 9 32 32 H 1.07994 * 120.00168 * 359.97438 * 13 12 11 33 33 H 1.07999 * 119.99493 * 180.23798 * 14 13 12 34 34 H 1.08000 * 120.00051 * 179.72572 * 15 14 13 35 35 H 1.08005 * 119.99755 * 179.97438 * 16 15 14 36 36 H 1.08000 * 120.00352 * 359.97438 * 17 12 11 37 37 H 0.96998 * 119.99605 * 5.09505 * 20 18 10 38 38 H 1.08001 * 120.45226 * 0.02562 * 22 21 20 39 39 H 1.08004 * 120.74628 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.35017 * 180.02562 * 24 23 22 41 41 H 1.08005 * 119.57633 * 179.72378 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7622 -5.2836 -1.7044 13 6 2.0187 -6.5834 -1.3100 14 6 1.1751 -7.6047 -1.7053 15 6 0.0810 -7.3277 -2.5033 16 6 -0.1725 -6.0285 -2.9020 17 6 0.6682 -5.0065 -2.5026 18 6 2.6408 -4.1250 1.1666 19 8 3.4311 -5.0488 1.1667 20 7 2.2032 -3.6125 2.3339 21 6 2.7347 -4.0697 3.5386 22 6 2.3584 -3.4630 4.7318 23 6 2.8940 -3.9263 5.9203 24 6 3.7908 -4.9853 5.8746 25 6 4.1237 -5.5367 4.6534 26 7 3.5929 -5.0772 3.5363 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8895 30 1 2.6868 -3.3877 -2.0289 31 1 3.6884 -4.5594 -1.1390 32 1 2.8762 -6.8005 -0.6905 33 1 1.3733 -8.6197 -1.3940 34 1 -0.5756 -8.1262 -2.8158 35 1 -1.0272 -5.8121 -3.5259 36 1 0.4702 -3.9915 -2.8141 37 1 1.5184 -2.9256 2.3355 38 1 1.6576 -2.6412 4.7308 39 1 2.6199 -3.4750 6.8625 40 1 4.2266 -5.3709 6.7844 41 1 4.8243 -6.3576 4.6124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191295199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:40 Heat of formation + Delta-G solvation = 52.401230 kcal Electronic energy + Delta-G solvation = -25161.553837 eV Core-core repulsion = 21621.133591 eV Total energy + Delta-G solvation = -3540.420246 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40830 -39.26474 -38.38486 -35.17327 -34.38281 -32.78267 -32.09563 -31.26074 -30.54077 -29.43974 -27.46620 -25.64417 -23.58198 -23.16515 -22.59783 -22.10707 -21.04844 -19.29528 -18.01123 -16.98226 -16.73939 -16.20199 -15.93992 -15.37902 -15.12165 -14.98461 -14.61941 -14.59579 -14.37203 -13.87340 -13.55152 -13.12834 -13.01909 -12.81383 -12.64687 -12.40028 -12.19446 -11.82902 -11.63675 -11.41117 -11.06734 -10.91357 -10.82190 -10.56324 -10.33262 -10.25218 -9.80444 -9.66024 -9.58495 -8.72309 -8.64175 -8.57107 -8.40050 -7.98705 -7.61411 -6.26149 -4.34780 1.41779 1.59894 1.64109 1.75219 3.16765 3.17772 3.26237 3.31810 3.79533 4.09296 4.24853 4.36929 4.54052 4.89273 5.02856 5.06668 5.20114 5.20812 5.31571 5.32434 5.34047 5.48867 5.51185 5.74105 5.86660 5.92652 6.00290 6.15015 6.24356 6.36994 6.40004 6.41910 6.63547 6.65834 6.78616 6.81512 7.00944 7.04974 7.14620 7.32218 7.35864 7.61369 7.70023 7.95945 8.27443 8.61014 8.80730 9.29866 9.37076 10.79670 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.007343 B = 0.006507 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3812.040183 B = 4301.933440 C = 7491.775462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.240 3.760 10 N -0.606 5.606 11 C 0.175 3.825 12 C -0.096 4.096 13 C -0.095 4.095 14 C -0.131 4.131 15 C -0.126 4.126 16 C -0.129 4.129 17 C -0.101 4.101 18 C 0.701 3.299 19 O -0.556 6.556 20 N -0.662 5.662 21 C 0.393 3.607 22 C -0.217 4.217 23 C -0.048 4.048 24 C -0.226 4.226 25 C 0.131 3.869 26 N -0.476 5.476 27 H 0.265 0.735 28 H 0.041 0.959 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.423 0.577 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -9.435 4.005 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.120 3.880 10 N -0.341 5.341 11 C 0.051 3.949 12 C -0.098 4.098 13 C -0.114 4.114 14 C -0.149 4.149 15 C -0.144 4.144 16 C -0.147 4.147 17 C -0.120 4.120 18 C 0.402 3.598 19 O -0.431 6.431 20 N -0.311 5.311 21 C 0.160 3.840 22 C -0.241 4.241 23 C -0.074 4.074 24 C -0.248 4.248 25 C -0.028 4.028 26 N -0.190 5.190 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.263 0.737 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.944 -10.284 3.031 10.896 hybrid contribution -0.411 1.877 0.836 2.096 sum 1.533 -8.407 3.868 9.380 Atomic orbital electron populations 1.69933 1.05978 1.27328 1.49598 1.24952 0.94849 0.99339 0.94614 0.86455 0.80208 0.83153 0.77785 1.19650 1.20789 1.20826 1.21582 0.93800 0.90356 1.52143 0.91869 1.19349 0.87522 0.82848 0.98313 1.47432 1.47988 1.35903 1.02765 1.20093 0.95995 0.93345 0.85418 1.20467 0.97017 0.95170 0.97132 1.21254 0.99650 0.92277 0.98182 1.21103 0.95687 0.98984 0.99086 1.21069 0.97794 0.96587 0.98995 1.21086 0.99624 0.93041 1.00924 1.21183 0.94144 0.99313 0.97322 1.15882 0.81266 0.82180 0.80428 1.90913 1.36832 1.29687 1.85662 1.43057 1.42516 1.42529 1.02961 1.18343 0.90524 0.89989 0.85143 1.21477 1.06400 1.04351 0.91887 1.21245 0.94066 0.94580 0.97532 1.21914 1.02988 1.00505 0.99409 1.22635 0.95845 0.97292 0.87059 1.67771 1.09906 1.11186 1.30182 0.92490 0.94077 0.95564 0.89421 0.89934 0.85441 0.86666 0.86775 0.86484 0.85785 0.73656 0.84730 0.85044 0.85434 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 13.29 55.43 0.74 -22.85 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.54 -13.57 9.39 -34.44 -0.32 -13.90 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.50 4.97 -5.19 -0.03 5.47 16 10 N -0.61 -12.77 2.44 -182.18 -0.44 -13.21 16 11 C 0.18 3.28 5.53 -5.19 -0.03 3.25 16 12 C -0.10 -1.67 5.46 -104.63 -0.57 -2.25 16 13 C -0.10 -1.60 9.70 -39.58 -0.38 -1.98 16 14 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 15 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 16 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 17 C -0.10 -1.64 9.70 -39.58 -0.38 -2.02 16 18 C 0.70 15.30 8.24 -86.92 -0.72 14.58 16 19 O -0.56 -12.96 13.73 5.30 0.07 -12.89 16 20 N -0.66 -13.22 5.27 -15.81 -0.08 -13.30 16 21 C 0.39 7.28 7.42 -154.72 -1.15 6.13 16 22 C -0.22 -3.24 9.94 -39.24 -0.39 -3.63 16 23 C -0.05 -0.59 10.17 -39.32 -0.40 -0.99 16 24 C -0.23 -2.74 10.11 -39.42 -0.40 -3.14 16 25 C 0.13 1.92 11.17 -17.57 -0.20 1.72 16 26 N -0.48 -9.06 7.89 -12.37 -0.10 -9.15 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.03 0.62 6.29 -51.93 -0.33 0.29 16 30 H 0.09 1.58 8.02 -51.93 -0.42 1.16 16 31 H 0.08 1.55 7.36 -51.93 -0.38 1.17 16 32 H 0.13 2.26 7.60 -52.49 -0.40 1.86 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.42 8.17 6.39 -40.82 -0.26 7.91 16 38 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -30.33 355.19 -10.87 -41.21 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.13 Total: 11.62 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -6.26 Total: -1.86 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.11 Total: -58.52 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.33 -10.87 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191295199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.608 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds