Wall clock time and date at job start Fri Apr 10 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48506 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47110 * 299.99988 * 3 2 1 6 6 H 1.48494 * 109.47502 * 60.00312 * 3 2 1 7 7 C 1.37877 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00141 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99666 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00064 * 270.00315 * 10 9 7 12 12 C 1.50701 * 109.47035 * 269.99985 * 11 10 9 13 13 C 1.38233 * 119.99697 * 269.72361 * 12 11 10 14 14 C 1.38242 * 119.99500 * 179.77305 * 13 12 11 15 15 C 1.38230 * 120.00073 * 0.49980 * 14 13 12 16 16 C 1.38238 * 120.00019 * 359.75524 * 15 14 13 17 17 C 1.38231 * 119.99813 * 90.00442 * 12 11 10 18 18 C 1.34772 * 120.00187 * 90.00500 * 10 9 7 19 19 O 1.21578 * 120.00438 * 180.02562 * 18 10 9 20 20 N 1.34781 * 120.00026 * 359.97438 * 18 10 9 21 21 C 1.39391 * 120.00057 * 185.08628 * 20 18 10 22 22 C 1.39050 * 119.69206 * 174.84078 * 21 20 18 23 23 C 1.38348 * 119.09519 * 180.02562 * 22 21 20 24 24 C 1.38842 * 118.50359 * 359.97438 * 23 22 21 25 25 C 1.38064 * 119.30603 * 0.27828 * 24 23 22 26 26 N 1.31943 * 120.85111 * 359.44843 * 25 24 23 27 27 H 0.96997 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47275 * 60.00562 * 9 7 2 29 29 H 1.08994 * 109.47903 * 300.00620 * 9 7 2 30 30 H 1.09004 * 109.46949 * 30.00045 * 11 10 9 31 31 H 1.08996 * 109.47321 * 149.99682 * 11 10 9 32 32 H 1.07994 * 120.00168 * 359.97438 * 13 12 11 33 33 H 1.07999 * 119.99493 * 180.23798 * 14 13 12 34 34 H 1.08000 * 120.00051 * 179.72572 * 15 14 13 35 35 H 1.08005 * 119.99755 * 179.97438 * 16 15 14 36 36 H 1.08000 * 120.00352 * 359.97438 * 17 12 11 37 37 H 0.96998 * 119.99605 * 5.09505 * 20 18 10 38 38 H 1.08001 * 120.45226 * 0.02562 * 22 21 20 39 39 H 1.08004 * 120.74628 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.35017 * 180.02562 * 24 23 22 41 41 H 1.08005 * 119.57633 * 179.72378 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7622 -5.2836 -1.7044 13 6 2.0187 -6.5834 -1.3100 14 6 1.1751 -7.6047 -1.7053 15 6 0.0810 -7.3277 -2.5033 16 6 -0.1725 -6.0285 -2.9020 17 6 0.6682 -5.0065 -2.5026 18 6 2.6408 -4.1250 1.1666 19 8 3.4311 -5.0488 1.1667 20 7 2.2032 -3.6125 2.3339 21 6 2.7347 -4.0697 3.5386 22 6 2.3584 -3.4630 4.7318 23 6 2.8940 -3.9263 5.9203 24 6 3.7908 -4.9853 5.8746 25 6 4.1237 -5.5367 4.6534 26 7 3.5929 -5.0772 3.5363 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8895 30 1 2.6868 -3.3877 -2.0289 31 1 3.6884 -4.5594 -1.1390 32 1 2.8762 -6.8005 -0.6905 33 1 1.3733 -8.6197 -1.3940 34 1 -0.5756 -8.1262 -2.8158 35 1 -1.0272 -5.8121 -3.5259 36 1 0.4702 -3.9915 -2.8141 37 1 1.5184 -2.9256 2.3355 38 1 1.6576 -2.6412 4.7308 39 1 2.6199 -3.4750 6.8625 40 1 4.2266 -5.3709 6.7844 41 1 4.8243 -6.3576 4.6124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191295199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:39 Heat of formation + Delta-G solvation = 37.501754 kcal Electronic energy + Delta-G solvation = -25162.199927 eV Core-core repulsion = 21621.133591 eV Total energy + Delta-G solvation = -3541.066335 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81424 -40.58010 -39.70301 -36.80490 -35.89540 -34.65964 -33.24210 -32.64391 -31.74982 -30.68440 -29.28872 -27.10537 -25.14197 -24.55878 -23.89876 -23.36092 -22.31704 -20.79660 -19.43583 -18.78519 -18.28645 -17.60092 -17.10006 -16.69256 -16.61520 -16.46784 -16.14844 -15.87041 -15.82596 -15.09208 -14.94386 -14.70905 -14.28951 -14.22024 -13.93409 -13.84501 -13.59065 -13.40370 -13.07995 -12.81610 -12.75474 -12.59479 -12.20096 -12.14672 -11.80443 -11.71438 -11.65983 -11.26023 -10.73760 -10.64022 -9.99357 -9.78954 -9.69556 -9.54128 -9.05214 -8.22845 -6.38523 0.25628 0.40233 0.51288 0.53177 1.37986 1.42235 1.52184 1.73365 2.24865 2.38968 2.80034 3.06081 3.07786 3.11539 3.68869 3.94898 3.95394 4.02530 4.18711 4.22777 4.28490 4.31877 4.35925 4.47295 4.62302 4.74471 4.78613 4.83583 4.87740 5.08520 5.11759 5.12782 5.19661 5.34467 5.47210 5.54519 5.59936 5.62203 5.69921 5.80088 5.97355 6.00538 6.03486 6.14963 6.62473 6.86008 7.26500 7.37127 7.70831 8.81741 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.007343 B = 0.006507 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3812.040183 B = 4301.933440 C = 7491.775462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.257 3.743 10 N -0.608 5.608 11 C 0.176 3.824 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.131 4.131 15 C -0.119 4.119 16 C -0.127 4.127 17 C -0.115 4.115 18 C 0.695 3.305 19 O -0.579 6.579 20 N -0.667 5.667 21 C 0.351 3.649 22 C -0.218 4.218 23 C -0.042 4.042 24 C -0.202 4.202 25 C 0.109 3.891 26 N -0.522 5.522 27 H 0.269 0.731 28 H 0.028 0.972 29 H 0.019 0.981 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.421 0.579 38 H 0.146 0.854 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -9.948 5.502 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.066 0.934 9 C 0.137 3.863 10 N -0.343 5.343 11 C 0.053 3.947 12 C -0.113 4.113 13 C -0.131 4.131 14 C -0.149 4.149 15 C -0.137 4.137 16 C -0.145 4.145 17 C -0.134 4.134 18 C 0.397 3.603 19 O -0.455 6.455 20 N -0.316 5.316 21 C 0.120 3.880 22 C -0.242 4.242 23 C -0.068 4.068 24 C -0.224 4.224 25 C -0.049 4.049 26 N -0.237 5.237 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.261 0.739 38 H 0.164 0.836 39 H 0.192 0.808 40 H 0.188 0.812 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.411 -10.809 4.556 11.815 hybrid contribution -0.213 1.938 0.481 2.008 sum 1.198 -8.871 5.037 10.272 Atomic orbital electron populations 1.70004 1.06981 1.28219 1.50120 1.25573 0.95535 1.01987 0.94211 0.85551 0.78590 0.79720 0.78047 1.20233 1.20239 1.20051 1.21656 0.93085 0.91571 1.52246 0.93436 1.18996 0.87363 0.82785 0.97199 1.47441 1.47706 1.35571 1.03542 1.20113 0.96092 0.93928 0.84575 1.20323 0.97645 0.94862 0.98519 1.21199 1.00074 0.92859 0.98921 1.21403 0.95365 0.99455 0.98657 1.21484 0.97415 0.97252 0.97504 1.21433 0.99704 0.92840 1.00501 1.21247 0.94448 0.99917 0.97773 1.16078 0.81186 0.82121 0.80964 1.90874 1.37911 1.30659 1.86077 1.43001 1.42738 1.42626 1.03244 1.18666 0.92308 0.91558 0.85435 1.21730 1.06497 1.04387 0.91612 1.21785 0.92885 0.94080 0.98046 1.22374 1.01181 0.98999 0.99804 1.23127 0.96338 0.98186 0.87230 1.67606 1.11004 1.12213 1.32889 0.92159 0.95348 0.96271 0.89493 0.90832 0.87302 0.84298 0.83094 0.83747 0.86293 0.73879 0.83583 0.80809 0.81154 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.86 13.29 21.45 0.28 -48.58 16 2 C 0.03 1.44 5.46 84.65 0.46 1.91 16 3 Si 0.96 41.51 29.54 68.60 2.03 43.53 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -28.37 9.39 25.60 0.24 -28.13 16 8 H 0.05 2.58 7.81 -2.92 -0.02 2.56 16 9 C 0.26 12.37 4.97 85.63 0.43 12.80 16 10 N -0.61 -27.19 2.44 -848.57 -2.07 -29.26 16 11 C 0.18 7.06 5.53 85.63 0.47 7.53 16 12 C -0.11 -4.08 5.46 -19.87 -0.11 -4.19 16 13 C -0.11 -3.89 9.70 22.27 0.22 -3.68 16 14 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 15 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 16 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 17 C -0.12 -3.80 9.70 22.27 0.22 -3.59 16 18 C 0.70 32.17 8.24 179.05 1.47 33.65 16 19 O -0.58 -28.64 13.73 -3.96 -0.05 -28.70 16 20 N -0.67 -28.05 5.27 -322.21 -1.70 -29.75 16 21 C 0.35 13.36 7.42 132.93 0.99 14.34 16 22 C -0.22 -6.32 9.94 22.49 0.22 -6.10 16 23 C -0.04 -0.90 10.17 22.44 0.23 -0.67 16 24 C -0.20 -4.24 10.11 22.37 0.23 -4.01 16 25 C 0.11 3.10 11.17 84.63 0.95 4.04 16 26 N -0.52 -20.35 7.89 -193.04 -1.52 -21.87 16 27 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.03 1.43 8.07 -2.38 -0.02 1.41 16 29 H 0.02 0.96 6.29 -2.39 -0.02 0.94 16 30 H 0.09 3.38 8.02 -2.38 -0.02 3.36 16 31 H 0.07 3.01 7.36 -2.39 -0.02 2.99 16 32 H 0.11 4.13 7.60 -2.91 -0.02 4.11 16 33 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.42 17.24 6.39 -92.71 -0.59 16.64 16 38 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.17 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -68.13 355.19 4.10 -64.03 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.45 Total: 36.14 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.68 Total: 14.46 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.00 Total: -129.46 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -68.13 4.10 -64.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191295199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.531 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds