Wall clock time and date at job start Fri Apr 10 2020 22:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32136 * 120.54114 * 2 1 4 4 C 1.31871 * 120.97455 * 180.24168 * 3 2 1 5 5 N 1.31875 * 122.11411 * 359.77410 * 4 3 2 6 6 C 1.32135 * 120.97434 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.54672 * 180.02562 * 6 5 4 8 8 C 1.40017 * 120.54157 * 179.75677 * 2 1 3 9 9 C 1.47709 * 120.94929 * 0.02725 * 8 2 1 10 10 O 1.21596 * 119.99617 * 269.71809 * 9 8 2 11 11 N 1.34776 * 119.99959 * 89.43563 * 9 8 2 12 12 C 1.36865 * 120.00269 * 0.28183 * 11 9 8 13 13 H 1.08001 * 120.00477 * 320.67833 * 12 11 9 14 14 C 1.39054 * 120.00223 * 140.67497 * 12 11 9 15 15 N 1.31357 * 120.00072 * 340.62914 * 14 12 11 16 16 Si 1.86804 * 119.99999 * 160.62492 * 14 12 11 17 17 H 1.48504 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46895 * 120.00257 * 16 14 12 19 19 H 1.48498 * 109.47201 * 240.00373 * 16 14 12 20 20 C 1.46509 * 119.99566 * 180.27610 * 11 9 8 21 21 C 1.50699 * 109.46859 * 83.81641 * 20 11 9 22 22 C 1.38236 * 119.99503 * 268.01112 * 21 20 11 23 23 C 1.38231 * 119.99917 * 179.77048 * 22 21 20 24 24 C 1.38245 * 119.99817 * 0.50485 * 23 22 21 25 25 C 1.38227 * 119.99932 * 359.74922 * 24 23 22 26 26 C 1.38233 * 120.00187 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47055 * 270.24121 * 1 2 3 28 28 H 1.09001 * 109.47629 * 30.24128 * 1 2 3 29 29 H 1.09003 * 109.47052 * 150.24408 * 1 2 3 30 30 H 1.08007 * 118.94688 * 179.74630 * 4 3 2 31 31 H 1.08998 * 109.46895 * 269.97237 * 7 6 5 32 32 H 1.08998 * 109.47019 * 29.96931 * 7 6 5 33 33 H 1.09001 * 109.47409 * 149.97885 * 7 6 5 34 34 H 0.97005 * 120.00272 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.46506 * 203.81316 * 20 11 9 36 36 H 1.08994 * 109.47205 * 323.80769 * 20 11 9 37 37 H 1.07996 * 120.00208 * 359.97438 * 22 21 20 38 38 H 1.08000 * 120.00196 * 180.22912 * 23 22 21 39 39 H 1.08001 * 119.99916 * 179.72757 * 24 23 22 40 40 H 1.07996 * 119.99993 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.00507 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1380 0.0000 4 6 3.4971 1.1480 -0.0048 5 7 4.2066 0.0364 -0.0053 6 6 3.6175 -1.1464 -0.0006 7 6 4.4377 -2.4106 -0.0007 8 6 2.2185 -1.2059 0.0051 9 6 1.5135 -2.5039 0.0100 10 8 1.2275 -3.0363 1.0651 11 7 1.1823 -3.0952 -1.1549 12 6 1.5042 -2.4959 -2.3425 13 1 1.4153 -1.4248 -2.4485 14 6 1.9459 -3.2660 -3.4127 15 7 2.4160 -4.4744 -3.2025 16 14 1.8705 -2.5821 -5.1495 17 1 1.3050 -1.2094 -5.1168 18 1 3.2390 -2.5397 -5.7245 19 1 1.0081 -3.4534 -5.9875 20 6 0.4776 -4.3797 -1.1499 21 6 -1.0014 -4.1406 -0.9878 22 6 -1.5662 -4.1333 0.2739 23 6 -2.9220 -3.9092 0.4230 24 6 -3.7150 -3.7028 -0.6905 25 6 -3.1512 -3.7154 -1.9525 26 6 -1.7943 -3.9338 -2.1012 27 1 -0.3633 0.0043 1.0277 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8922 -0.5100 30 1 4.0127 2.0971 -0.0088 31 1 4.6314 -2.7179 -1.0283 32 1 5.3841 -2.2297 0.5089 33 1 3.8909 -3.1986 0.5172 34 1 2.7238 -5.0118 -3.9492 35 1 0.6609 -4.8982 -2.0910 36 1 0.8400 -4.9897 -0.3225 37 1 -0.9475 -4.2993 1.1434 38 1 -3.3626 -3.8998 1.4089 39 1 -4.7751 -3.5322 -0.5743 40 1 -3.7707 -3.5546 -2.8223 41 1 -1.3538 -3.9440 -3.0872 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191315168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:43 Heat of formation + Delta-G solvation = 36.185859 kcal Electronic energy + Delta-G solvation = -26362.189981 eV Core-core repulsion = 22821.066584 eV Total energy + Delta-G solvation = -3541.123397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71369 -39.06246 -37.91135 -35.01332 -34.35204 -32.74455 -32.04167 -30.70303 -30.35246 -28.89883 -27.44653 -25.97951 -25.00746 -23.61721 -21.99021 -21.17941 -20.91811 -19.50191 -17.71642 -17.32322 -16.50643 -15.87880 -15.80178 -15.01334 -14.77399 -14.55061 -14.46912 -14.28230 -13.57521 -13.17918 -12.98927 -12.92217 -12.87796 -12.65652 -12.19604 -12.15185 -12.06287 -11.99373 -11.67644 -11.62430 -11.43457 -11.10479 -10.95360 -10.90882 -10.50028 -10.46188 -10.27976 -9.78423 -9.33257 -8.93825 -8.80964 -8.61013 -8.39844 -8.18574 -7.73817 -6.59125 -4.29059 1.33372 1.53774 1.85924 1.92996 2.97540 3.11587 3.15255 3.55631 3.92838 4.13713 4.27002 4.44572 4.52953 4.72485 4.78089 4.86623 5.36594 5.40713 5.49424 5.56515 5.61945 5.78193 5.82299 5.90311 5.93922 6.03397 6.09493 6.12702 6.16195 6.29596 6.35685 6.39212 6.53344 6.57139 6.66289 6.90313 6.96263 6.97512 7.02546 7.25574 7.33705 7.46955 7.54388 7.68885 8.15695 8.53430 8.85726 9.22101 9.66552 10.43515 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.006943 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.731746 B = 4031.680083 C = 5195.335205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.195 3.805 3 N -0.532 5.532 4 C 0.288 3.712 5 N -0.530 5.530 6 C 0.211 3.789 7 C -0.102 4.102 8 C -0.166 4.166 9 C 0.524 3.476 10 O -0.589 6.589 11 N -0.414 5.414 12 C -0.340 4.340 13 H 0.084 0.916 14 C 0.053 3.947 15 N -0.851 5.851 16 Si 0.905 3.095 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.276 1.276 20 C 0.152 3.848 21 C -0.084 4.084 22 C -0.100 4.100 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.097 4.097 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.190 0.810 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.273 0.727 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 2.439 1.700 5.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.049 3.951 3 N -0.247 5.247 4 C -0.001 4.001 5 N -0.246 5.246 6 C 0.065 3.935 7 C -0.159 4.159 8 C -0.173 4.173 9 C 0.310 3.690 10 O -0.474 6.474 11 N -0.130 5.130 12 C -0.468 4.468 13 H 0.102 0.898 14 C -0.154 4.154 15 N -0.486 5.486 16 Si 0.731 3.269 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.201 1.201 20 C 0.029 3.971 21 C -0.085 4.085 22 C -0.118 4.118 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.116 4.116 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.207 0.793 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.962 2.835 2.070 5.293 hybrid contribution -0.381 -0.237 -1.121 1.208 sum -4.342 2.598 0.948 5.148 Atomic orbital electron populations 1.20753 0.88002 1.04120 1.03240 1.21694 0.97229 0.87050 0.89130 1.68134 1.10259 1.30022 1.16299 1.24760 0.86822 0.96693 0.91776 1.68166 1.41628 0.98648 1.16156 1.21713 0.90235 0.93930 0.87626 1.20740 0.98736 0.91973 1.04437 1.21436 0.95628 0.96575 1.03707 1.17832 0.81520 0.85017 0.84589 1.90644 1.59206 1.66157 1.31441 1.43271 1.46580 1.18895 1.04286 1.19303 1.45581 0.93300 0.88573 0.89838 1.25329 0.94056 0.95850 1.00214 1.69899 1.35718 1.10447 1.32542 0.86197 0.78426 0.79692 0.82554 1.19088 1.20463 1.20100 1.20397 0.84998 0.87192 1.04515 1.20590 0.97158 0.97991 0.92769 1.21295 0.94533 0.98398 0.97603 1.21067 0.94233 1.01648 0.98085 1.20988 0.99078 1.02000 0.92964 1.21045 0.95254 1.01819 0.96911 1.21117 0.93142 0.98417 0.98920 0.90077 0.90254 0.89684 0.79314 0.88667 0.90800 0.90070 0.91711 0.87030 0.91635 0.85602 0.86939 0.87093 0.86902 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.86 36.01 0.35 -1.47 16 2 C 0.19 3.87 6.72 -81.79 -0.55 3.33 16 3 N -0.53 -9.91 10.36 -10.46 -0.11 -10.02 16 4 C 0.29 4.95 12.27 -92.02 -1.13 3.82 16 5 N -0.53 -10.07 10.36 -10.46 -0.11 -10.18 16 6 C 0.21 4.31 6.87 -81.79 -0.56 3.75 16 7 C -0.10 -1.90 9.86 36.01 0.35 -1.55 16 8 C -0.17 -3.58 4.16 -104.69 -0.44 -4.01 16 9 C 0.52 11.96 4.28 -12.39 -0.05 11.91 16 10 O -0.59 -14.38 15.62 5.28 0.08 -14.29 16 11 N -0.41 -9.44 2.50 -117.21 -0.29 -9.73 16 12 C -0.34 -7.98 8.58 -15.00 -0.13 -8.11 16 13 H 0.08 2.04 7.31 -52.49 -0.38 1.66 16 14 C 0.05 1.23 4.93 -17.45 -0.09 1.15 16 15 N -0.85 -20.25 11.56 55.50 0.64 -19.61 16 16 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 C 0.15 3.30 4.99 -5.19 -0.03 3.27 16 21 C -0.08 -1.64 5.41 -104.62 -0.57 -2.20 16 22 C -0.10 -1.83 9.30 -39.58 -0.37 -2.20 16 23 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 24 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 26 C -0.10 -1.76 9.71 -39.58 -0.38 -2.14 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.64 7.18 -51.93 -0.37 1.27 16 30 H 0.19 2.42 8.06 -52.48 -0.42 2.00 16 31 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.61 7.18 -51.93 -0.37 1.24 16 34 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 35 H 0.11 2.55 5.63 -51.93 -0.29 2.26 16 36 H 0.07 1.47 7.54 -51.93 -0.39 1.08 16 37 H 0.13 2.42 7.29 -52.49 -0.38 2.04 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -26.95 351.71 -9.42 -36.37 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.14 Total: 10.38 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -4.77 Total: -1.73 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.13 Total: -49.54 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.95 -9.42 -36.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191315168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.558 kcal (2) G-P(sol) polarization free energy of solvation -26.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds