Wall clock time and date at job start Fri Apr 10 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32136 * 120.54114 * 2 1 4 4 C 1.31871 * 120.97455 * 180.24168 * 3 2 1 5 5 N 1.31875 * 122.11411 * 359.77410 * 4 3 2 6 6 C 1.32135 * 120.97434 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.54672 * 180.02562 * 6 5 4 8 8 C 1.40017 * 120.54157 * 179.75677 * 2 1 3 9 9 C 1.47709 * 120.94929 * 0.02725 * 8 2 1 10 10 O 1.21596 * 119.99617 * 269.71809 * 9 8 2 11 11 N 1.34776 * 119.99959 * 89.43563 * 9 8 2 12 12 C 1.36865 * 120.00269 * 0.28183 * 11 9 8 13 13 H 1.08001 * 120.00477 * 320.67833 * 12 11 9 14 14 C 1.39054 * 120.00223 * 140.67497 * 12 11 9 15 15 N 1.31357 * 120.00072 * 340.62914 * 14 12 11 16 16 Si 1.86804 * 119.99999 * 160.62492 * 14 12 11 17 17 H 1.48504 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46895 * 120.00257 * 16 14 12 19 19 H 1.48498 * 109.47201 * 240.00373 * 16 14 12 20 20 C 1.46509 * 119.99566 * 180.27610 * 11 9 8 21 21 C 1.50699 * 109.46859 * 83.81641 * 20 11 9 22 22 C 1.38236 * 119.99503 * 268.01112 * 21 20 11 23 23 C 1.38231 * 119.99917 * 179.77048 * 22 21 20 24 24 C 1.38245 * 119.99817 * 0.50485 * 23 22 21 25 25 C 1.38227 * 119.99932 * 359.74922 * 24 23 22 26 26 C 1.38233 * 120.00187 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47055 * 270.24121 * 1 2 3 28 28 H 1.09001 * 109.47629 * 30.24128 * 1 2 3 29 29 H 1.09003 * 109.47052 * 150.24408 * 1 2 3 30 30 H 1.08007 * 118.94688 * 179.74630 * 4 3 2 31 31 H 1.08998 * 109.46895 * 269.97237 * 7 6 5 32 32 H 1.08998 * 109.47019 * 29.96931 * 7 6 5 33 33 H 1.09001 * 109.47409 * 149.97885 * 7 6 5 34 34 H 0.97005 * 120.00272 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.46506 * 203.81316 * 20 11 9 36 36 H 1.08994 * 109.47205 * 323.80769 * 20 11 9 37 37 H 1.07996 * 120.00208 * 359.97438 * 22 21 20 38 38 H 1.08000 * 120.00196 * 180.22912 * 23 22 21 39 39 H 1.08001 * 119.99916 * 179.72757 * 24 23 22 40 40 H 1.07996 * 119.99993 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.00507 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1380 0.0000 4 6 3.4971 1.1480 -0.0048 5 7 4.2066 0.0364 -0.0053 6 6 3.6175 -1.1464 -0.0006 7 6 4.4377 -2.4106 -0.0007 8 6 2.2185 -1.2059 0.0051 9 6 1.5135 -2.5039 0.0100 10 8 1.2275 -3.0363 1.0651 11 7 1.1823 -3.0952 -1.1549 12 6 1.5042 -2.4959 -2.3425 13 1 1.4153 -1.4248 -2.4485 14 6 1.9459 -3.2660 -3.4127 15 7 2.4160 -4.4744 -3.2025 16 14 1.8705 -2.5821 -5.1495 17 1 1.3050 -1.2094 -5.1168 18 1 3.2390 -2.5397 -5.7245 19 1 1.0081 -3.4534 -5.9875 20 6 0.4776 -4.3797 -1.1499 21 6 -1.0014 -4.1406 -0.9878 22 6 -1.5662 -4.1333 0.2739 23 6 -2.9220 -3.9092 0.4230 24 6 -3.7150 -3.7028 -0.6905 25 6 -3.1512 -3.7154 -1.9525 26 6 -1.7943 -3.9338 -2.1012 27 1 -0.3633 0.0043 1.0277 28 1 -0.3634 0.8878 -0.5176 29 1 -0.3633 -0.8922 -0.5100 30 1 4.0127 2.0971 -0.0088 31 1 4.6314 -2.7179 -1.0283 32 1 5.3841 -2.2297 0.5089 33 1 3.8909 -3.1986 0.5172 34 1 2.7238 -5.0118 -3.9492 35 1 0.6609 -4.8982 -2.0910 36 1 0.8400 -4.9897 -0.3225 37 1 -0.9475 -4.2993 1.1434 38 1 -3.3626 -3.8998 1.4089 39 1 -4.7751 -3.5322 -0.5743 40 1 -3.7707 -3.5546 -2.8223 41 1 -1.3538 -3.9440 -3.0872 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191315168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:42 Heat of formation + Delta-G solvation = 24.018041 kcal Electronic energy + Delta-G solvation = -26362.717617 eV Core-core repulsion = 22821.066584 eV Total energy + Delta-G solvation = -3541.651033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24453 -40.60490 -39.43277 -36.79079 -35.84599 -34.27303 -33.77672 -32.22445 -31.66961 -30.37694 -28.97452 -27.62277 -26.70720 -25.14465 -23.31887 -22.68783 -22.33776 -21.23326 -19.41778 -18.84865 -18.08728 -17.32491 -17.25967 -16.75999 -16.40639 -16.04056 -15.97440 -15.70614 -15.17470 -14.87034 -14.45666 -14.34137 -14.19351 -14.15245 -13.71283 -13.66120 -13.54072 -13.49874 -13.26152 -13.14626 -13.09006 -12.80198 -12.58601 -12.48752 -12.11958 -11.90438 -11.73686 -11.26616 -11.10845 -10.64154 -10.32037 -10.24000 -9.72027 -9.57113 -9.53318 -8.38834 -6.14134 -0.17362 -0.01244 0.52280 0.60433 1.32128 1.42465 1.51650 1.81822 2.23752 2.61625 2.80813 2.95976 3.03676 3.11059 3.18935 3.36676 4.00422 4.04600 4.12568 4.15735 4.26231 4.33229 4.39662 4.40438 4.52877 4.56415 4.59838 4.64171 4.75983 4.86845 4.88572 4.89526 5.05631 5.15167 5.23700 5.29119 5.38313 5.44252 5.67572 5.68461 5.83527 5.95117 5.97176 6.23072 6.32861 7.03467 7.04986 7.43557 7.88357 8.64367 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.006943 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.731746 B = 4031.680083 C = 5195.335205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.191 3.809 3 N -0.532 5.532 4 C 0.293 3.707 5 N -0.534 5.534 6 C 0.199 3.801 7 C -0.092 4.092 8 C -0.198 4.198 9 C 0.524 3.476 10 O -0.616 6.616 11 N -0.416 5.416 12 C -0.345 4.345 13 H 0.073 0.927 14 C 0.024 3.976 15 N -0.874 5.874 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.159 3.841 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.112 4.112 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.237 0.763 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.276 0.724 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 4.315 1.110 7.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.045 3.955 3 N -0.248 5.248 4 C 0.006 3.994 5 N -0.250 5.250 6 C 0.054 3.946 7 C -0.149 4.149 8 C -0.205 4.205 9 C 0.311 3.689 10 O -0.503 6.503 11 N -0.131 5.131 12 C -0.473 4.473 13 H 0.091 0.909 14 C -0.182 4.182 15 N -0.510 5.510 16 Si 0.785 3.215 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 C 0.036 3.964 21 C -0.106 4.106 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.131 4.131 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.253 0.747 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.162 0.838 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.561 4.707 1.473 7.433 hybrid contribution 0.105 -0.788 -0.892 1.195 sum -5.456 3.919 0.581 6.743 Atomic orbital electron populations 1.20735 0.86752 1.04021 1.03962 1.22023 0.98296 0.86921 0.88300 1.68260 1.10894 1.29006 1.16608 1.25751 0.86623 0.97826 0.89202 1.68260 1.41586 0.98518 1.16613 1.21919 0.90133 0.94990 0.87605 1.20638 0.99570 0.91076 1.03660 1.21453 0.96304 0.96407 1.06381 1.18049 0.81162 0.85524 0.84146 1.90604 1.60343 1.67146 1.32211 1.43363 1.46565 1.18917 1.04264 1.19247 1.46092 0.92907 0.89013 0.90899 1.25914 0.93513 0.95988 1.02764 1.69970 1.36216 1.11320 1.33473 0.85367 0.78177 0.79038 0.78927 1.19202 1.20642 1.19245 1.20221 0.87031 0.86584 1.02561 1.20385 0.95742 1.00368 0.94079 1.21204 0.95955 0.99970 0.96368 1.21374 0.92920 1.00247 1.00088 1.21433 1.00883 0.99622 0.91868 1.21389 0.94141 1.00147 0.98702 1.21122 0.94547 0.99581 0.97852 0.88892 0.88056 0.91841 0.74670 0.89878 0.88079 0.92021 0.91427 0.88554 0.93846 0.87634 0.84238 0.83016 0.83791 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.37 9.86 71.24 0.70 -2.67 16 2 C 0.19 7.51 6.72 42.95 0.29 7.80 16 3 N -0.53 -18.89 10.36 -187.00 -1.94 -20.82 16 4 C 0.29 9.40 12.27 180.84 2.22 11.62 16 5 N -0.53 -19.60 10.36 -186.99 -1.94 -21.54 16 6 C 0.20 8.21 6.87 42.95 0.29 8.51 16 7 C -0.09 -3.55 9.86 71.24 0.70 -2.85 16 8 C -0.20 -8.70 4.16 -19.91 -0.08 -8.78 16 9 C 0.52 25.05 4.28 86.75 0.37 25.42 16 10 O -0.62 -31.77 15.62 -4.02 -0.06 -31.83 16 11 N -0.42 -19.89 2.50 -643.01 -1.61 -21.50 16 12 C -0.34 -16.71 8.58 84.10 0.72 -15.99 16 13 H 0.07 3.65 7.31 -2.91 -0.02 3.63 16 14 C 0.02 1.13 4.93 84.96 0.42 1.55 16 15 N -0.87 -42.97 11.56 21.68 0.25 -42.72 16 16 Si 0.96 38.17 29.60 68.60 2.03 40.20 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 20 C 0.16 7.37 4.99 85.63 0.43 7.80 16 21 C -0.10 -4.24 5.41 -19.87 -0.11 -4.34 16 22 C -0.12 -4.37 9.30 22.27 0.21 -4.16 16 23 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 24 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 26 C -0.11 -4.06 9.71 22.27 0.22 -3.84 16 27 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.06 2.48 7.18 -2.39 -0.02 2.46 16 30 H 0.24 5.08 8.06 -2.91 -0.02 5.05 16 31 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.06 2.58 7.18 -2.39 -0.02 2.57 16 34 H 0.28 12.77 8.31 -92.70 -0.77 12.00 16 35 H 0.10 4.70 5.63 -2.38 -0.01 4.68 16 36 H 0.04 2.12 7.54 -2.39 -0.02 2.11 16 37 H 0.11 4.32 7.29 -2.91 -0.02 4.30 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -60.13 351.71 4.83 -55.30 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 1.05 Total: 32.69 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 7.05 Total: 10.21 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.23 Total: -106.58 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.06 Total: -31.83 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -60.13 4.83 -55.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191315168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.322 kcal (2) G-P(sol) polarization free energy of solvation -60.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds