Wall clock time and date at job start Fri Apr 10 2020 22:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48495 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00068 * 3 2 1 6 6 H 1.48509 * 109.47012 * 59.99697 * 3 2 1 7 7 C 1.37874 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00371 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46954 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.46893 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99697 * 180.02562 * 12 11 10 14 14 O 1.21510 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.48190 * 119.99597 * 180.02562 * 13 12 11 16 16 C 1.39397 * 119.65935 * 180.02562 * 15 13 12 17 17 C 1.38664 * 119.25302 * 179.97438 * 16 15 13 18 18 C 1.38431 * 118.57699 * 359.73471 * 17 16 15 19 19 C 1.39603 * 119.25895 * 0.52227 * 18 17 16 20 20 C 1.48394 * 119.65252 * 179.73292 * 19 18 17 21 21 C 1.39298 * 119.72007 * 179.73192 * 20 19 18 22 22 C 1.38451 * 119.06956 * 179.74580 * 21 20 19 23 23 C 1.38751 * 118.50165 * 0.25583 * 22 21 20 24 24 C 1.38304 * 119.35733 * 359.97438 * 23 22 21 25 25 N 1.31716 * 120.89480 * 359.97438 * 24 23 22 26 26 N 1.32309 * 120.68747 * 359.46639 * 19 18 17 27 27 H 0.97001 * 119.99622 * 0.02562 * 1 2 3 28 28 H 1.09011 * 109.47193 * 59.99482 * 9 7 2 29 29 H 1.08996 * 109.47445 * 300.00145 * 9 7 2 30 30 H 1.08998 * 109.47130 * 60.00132 * 10 9 7 31 31 H 1.09000 * 109.47450 * 300.00003 * 10 9 7 32 32 H 1.08995 * 109.47210 * 60.00640 * 11 10 9 33 33 H 1.08996 * 109.47380 * 299.99855 * 11 10 9 34 34 H 0.96995 * 119.99801 * 0.02562 * 12 11 10 35 35 H 1.08003 * 120.36997 * 359.97438 * 16 15 13 36 36 H 1.08000 * 120.70636 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.36679 * 180.26072 * 18 17 16 38 38 H 1.08002 * 120.46934 * 0.02782 * 21 20 19 39 39 H 1.07994 * 120.75014 * 180.27399 * 22 21 20 40 40 H 1.08000 * 120.32141 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.55362 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0018 13 6 1.9830 -7.3713 0.0019 14 8 0.7883 -7.5933 0.0020 15 6 2.9460 -8.4977 0.0031 16 6 2.4735 -9.8091 0.0027 17 6 3.3821 -10.8567 0.0033 18 6 4.7343 -10.5604 -0.0014 19 6 5.1402 -9.2246 0.0047 20 6 6.5875 -8.8971 0.0058 21 6 6.9941 -7.5648 0.0061 22 6 8.3478 -7.2745 0.0125 23 6 9.2508 -8.3280 0.0130 24 6 8.7769 -9.6273 0.0076 25 7 7.4833 -9.8753 0.0025 26 7 4.2478 -8.2478 0.0041 27 1 -0.4849 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8719 -3.6043 0.8905 31 1 2.8720 -3.6044 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8539 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0021 35 1 1.4118 -10.0070 0.0019 36 1 3.0420 -11.8817 0.0034 37 1 5.4671 -11.3537 -0.0053 38 1 6.2636 -6.7693 0.0060 39 1 8.6931 -6.2513 0.0174 40 1 10.3134 -8.1352 0.0183 41 1 9.4770 -10.4497 0.0074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192119735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:46 Heat of formation + Delta-G solvation = 1.141548 kcal Electronic energy + Delta-G solvation = -23514.443027 eV Core-core repulsion = 19971.799995 eV Total energy + Delta-G solvation = -3542.643032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90870 -40.92800 -39.89783 -37.05341 -35.27377 -34.11667 -34.00103 -33.28226 -32.68477 -30.88168 -28.75460 -26.20949 -25.67980 -24.80234 -23.93520 -22.85898 -22.33674 -21.58874 -19.26840 -18.51595 -18.36259 -17.22230 -17.06430 -16.95917 -16.86713 -16.63851 -16.41105 -16.13008 -15.85741 -15.30856 -15.22427 -14.78341 -14.35992 -14.30347 -14.21293 -13.93795 -13.76765 -13.51534 -13.08845 -12.78512 -12.65870 -12.57791 -12.36606 -11.77501 -11.70726 -11.41493 -11.20559 -11.17988 -10.92832 -10.82942 -10.73232 -10.56309 -10.39125 -10.18641 -9.51158 -8.19898 -6.31198 -0.68398 -0.27639 0.32723 0.60197 1.41519 1.41653 1.55030 1.62895 1.97422 2.41821 2.53072 2.60563 3.05605 3.13968 3.32854 3.62190 3.84485 3.90445 4.00414 4.07413 4.12056 4.18070 4.19239 4.27227 4.31217 4.45882 4.52602 4.63346 4.86385 4.91335 4.91622 5.00128 5.05567 5.14344 5.18494 5.27992 5.33959 5.48451 5.51268 5.69534 5.74007 5.83559 6.21382 6.30508 6.62625 6.86020 6.91940 7.04399 7.38305 8.92503 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002766 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.271095 B =10119.827508 C =12302.345356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.697 5.697 13 C 0.564 3.436 14 O -0.569 6.569 15 C 0.065 3.935 16 C -0.108 4.108 17 C -0.069 4.069 18 C -0.106 4.106 19 C 0.148 3.852 20 C 0.140 3.860 21 C -0.147 4.147 22 C -0.083 4.083 23 C -0.156 4.156 24 C 0.093 3.907 25 N -0.489 5.489 26 N -0.459 5.459 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.417 0.583 35 H 0.156 0.844 36 H 0.187 0.813 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.209 -24.637 0.026 31.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.348 5.348 13 C 0.350 3.650 14 O -0.449 6.449 15 C -0.074 4.074 16 C -0.129 4.129 17 C -0.094 4.094 18 C -0.127 4.127 19 C 0.009 3.991 20 C 0.004 3.996 21 C -0.168 4.168 22 C -0.109 4.109 23 C -0.176 4.176 24 C -0.066 4.066 25 N -0.199 5.199 26 N -0.171 5.171 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.254 0.746 35 H 0.173 0.827 36 H 0.205 0.795 37 H 0.186 0.814 38 H 0.157 0.843 39 H 0.177 0.823 40 H 0.188 0.812 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 19.163 -24.622 0.022 31.200 hybrid contribution 0.091 1.381 0.001 1.384 sum 19.254 -23.240 0.022 30.180 Atomic orbital electron populations 1.70120 1.07919 1.27741 1.51750 1.26022 0.95761 1.03539 0.94777 0.85364 0.79204 0.78611 0.77647 1.18207 1.20532 1.20543 1.21697 0.93729 0.92002 1.50373 0.91625 1.18937 0.94358 0.92775 0.95229 1.21602 0.98517 0.91820 1.02045 1.21380 0.91809 0.85128 1.01309 1.45893 1.11698 1.04828 1.72341 1.18253 0.87222 0.83167 0.76340 1.90759 1.16843 1.85120 1.52156 1.20840 0.89699 0.93584 1.03293 1.22418 1.03170 0.91536 0.95818 1.22046 0.91543 1.01283 0.94539 1.22620 0.97674 0.97048 0.95334 1.19525 0.91177 0.89951 0.98473 1.19239 0.90635 0.90196 0.99508 1.22315 0.98041 0.97196 0.99274 1.22002 0.92137 1.01857 0.94867 1.22677 1.02825 0.93199 0.98856 1.23309 0.90828 0.97824 0.94596 1.67396 1.03715 1.36209 1.12563 1.67164 1.01463 1.37665 1.10841 0.92792 0.98765 0.98755 0.91524 0.91516 0.92469 0.92475 0.74575 0.82670 0.79532 0.81354 0.84285 0.82266 0.81155 0.79207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.09 5.27 30.59 0.16 -3.93 16 11 C 0.13 4.72 5.67 86.38 0.49 5.21 16 12 N -0.70 -22.31 5.55 -465.63 -2.58 -24.90 16 13 C 0.56 18.60 7.81 86.89 0.68 19.28 16 14 O -0.57 -22.10 16.32 -3.75 -0.06 -22.16 16 15 C 0.06 1.75 6.75 41.96 0.28 2.03 16 16 C -0.11 -2.28 9.63 22.65 0.22 -2.06 16 17 C -0.07 -1.01 10.16 22.42 0.23 -0.78 16 18 C -0.11 -1.81 9.61 22.65 0.22 -1.59 16 19 C 0.15 3.31 6.73 42.11 0.28 3.59 16 20 C 0.14 2.92 6.73 41.98 0.28 3.21 16 21 C -0.15 -2.84 9.61 22.58 0.22 -2.62 16 22 C -0.08 -1.12 10.17 22.44 0.23 -0.89 16 23 C -0.16 -1.55 10.11 22.41 0.23 -1.32 16 24 C 0.09 1.11 11.18 84.73 0.95 2.05 16 25 N -0.49 -8.80 9.40 -184.83 -1.74 -10.54 16 26 N -0.46 -11.66 8.57 -174.03 -1.49 -13.16 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.42 11.72 7.80 -92.71 -0.72 11.00 16 35 H 0.16 3.10 7.63 -2.91 -0.02 3.08 16 36 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.17 2.23 7.52 -2.91 -0.02 2.21 16 38 H 0.14 2.81 7.53 -2.91 -0.02 2.78 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 41 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -74.51 360.55 2.07 -72.44 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.33 Total: 15.68 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.30 Total: -6.33 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -5.53 Total: -105.72 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.06 Total: -22.16 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -74.51 2.07 -72.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192119735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.579 kcal (2) G-P(sol) polarization free energy of solvation -74.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds