Wall clock time and date at job start Fri Apr 10 2020 22:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00302 * 2 1 4 4 H 1.48497 * 109.47053 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.46705 * 29.99906 * 3 2 1 6 6 H 1.48498 * 109.46831 * 149.99595 * 3 2 1 7 7 C 1.37882 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00098 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46964 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46566 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99730 * 179.97438 * 12 11 10 14 14 O 1.21510 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.48176 * 120.00079 * 179.97438 * 13 12 11 16 16 C 1.39339 * 119.66405 * 180.02562 * 15 13 12 17 17 C 1.38697 * 119.26580 * 179.70168 * 16 15 13 18 18 C 1.38394 * 118.58160 * 0.51938 * 17 16 15 19 19 C 1.39644 * 119.26123 * 359.49882 * 18 17 16 20 20 C 1.48362 * 119.66034 * 180.25354 * 19 18 17 21 21 C 1.39780 * 120.53785 * 180.02562 * 20 19 18 22 22 C 1.38412 * 118.31144 * 180.02562 * 21 20 19 23 23 C 1.38308 * 119.28255 * 359.97438 * 22 21 20 24 24 N 1.31896 * 121.03442 * 0.02562 * 23 22 21 25 25 C 1.31744 * 121.84969 * 359.65737 * 24 23 22 26 26 N 1.32326 * 120.67786 * 0.23554 * 19 18 17 27 27 H 0.97007 * 119.99768 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47196 * 60.00019 * 9 7 2 29 29 H 1.09002 * 109.47359 * 299.99751 * 9 7 2 30 30 H 1.08994 * 109.47208 * 59.99670 * 10 9 7 31 31 H 1.09002 * 109.46819 * 300.00102 * 10 9 7 32 32 H 1.08994 * 109.47693 * 59.99642 * 11 10 9 33 33 H 1.09002 * 109.47169 * 299.99561 * 11 10 9 34 34 H 0.96994 * 120.00207 * 359.97438 * 12 11 10 35 35 H 1.08000 * 120.36508 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.71084 * 180.29603 * 17 16 15 37 37 H 1.08002 * 120.37294 * 179.78383 * 18 17 16 38 38 H 1.08007 * 120.84060 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.35588 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.48370 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.70279 * 180.31187 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5514 -2.6366 0.0012 12 7 6.0397 -4.0179 0.0004 13 6 7.3648 -4.2642 0.0008 14 8 8.1544 -3.3407 0.0022 15 6 7.8587 -5.6613 0.0006 16 6 9.2301 -5.9079 0.0015 17 6 9.6833 -7.2187 0.0076 18 6 8.7511 -8.2416 0.0017 19 6 7.3909 -7.9255 0.0004 20 6 6.3840 -9.0150 -0.0003 21 6 5.0178 -8.7195 -0.0022 22 6 4.1185 -9.7717 -0.0022 23 6 4.5961 -11.0697 -0.0010 24 7 5.8916 -11.3177 0.0007 25 6 6.7848 -10.3492 -0.0054 26 7 6.9909 -6.6641 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6809 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.6584 -3.1503 -0.8902 31 1 3.6577 -3.1507 0.8897 32 1 5.9141 -2.1231 0.8915 33 1 5.9155 -2.1225 -0.8884 34 1 5.4093 -4.7551 -0.0003 35 1 9.9323 -5.0873 0.0019 36 1 10.7411 -7.4365 0.0133 37 1 9.0720 -9.2728 0.0027 38 1 4.6726 -7.6961 -0.0035 39 1 3.0554 -9.5812 -0.0040 40 1 3.8974 -11.8932 -0.0014 41 1 7.8371 -10.5918 -0.0088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192194480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:50 Heat of formation + Delta-G solvation = 24.526124 kcal Electronic energy + Delta-G solvation = -23543.417721 eV Core-core repulsion = 20001.788720 eV Total energy + Delta-G solvation = -3541.629001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16707 -40.16297 -38.95259 -35.63712 -33.86677 -33.57006 -32.93231 -32.35421 -31.38083 -30.05192 -27.44519 -25.28177 -24.94019 -23.63960 -22.66696 -22.08257 -20.86128 -20.20334 -18.32922 -17.59829 -17.10628 -16.74070 -16.48754 -16.10459 -15.64928 -15.63281 -15.29364 -14.79168 -14.43549 -14.22461 -14.18667 -13.94331 -13.52540 -13.47639 -13.36381 -12.71895 -12.40565 -12.26647 -12.05854 -11.94466 -11.11388 -10.91287 -10.72902 -10.57008 -10.29004 -10.13797 -9.99130 -9.93637 -9.90810 -9.79555 -9.60753 -9.24001 -8.96922 -8.78713 -8.56506 -6.07226 -4.05945 -0.02754 0.46257 0.88809 1.25726 2.60265 3.06521 3.30512 3.37185 3.38144 3.42180 3.51583 3.71827 3.94275 4.15693 4.43038 4.43551 4.45864 4.55159 4.62936 4.66775 4.80487 4.97971 5.02041 5.19819 5.26884 5.34417 5.47944 5.58505 5.62129 5.67747 5.78739 5.85158 5.98199 6.10977 6.26934 6.28901 6.42051 6.64697 6.76268 7.21149 7.25111 7.34761 7.52973 7.61407 7.75355 8.17142 8.49442 8.96714 9.54999 11.06025 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.002753 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.320820 B =10167.923746 C =12139.493630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.112 3.888 12 N -0.702 5.702 13 C 0.564 3.436 14 O -0.536 6.536 15 C 0.094 3.906 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.143 4.143 19 C 0.170 3.830 20 C -0.101 4.101 21 C -0.035 4.035 22 C -0.172 4.172 23 C 0.105 3.895 24 N -0.486 5.486 25 C 0.117 3.883 26 N -0.452 5.452 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.159 0.841 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.560 -22.489 0.014 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.011 4.011 12 N -0.352 5.352 13 C 0.348 3.652 14 O -0.413 6.413 15 C -0.045 4.045 16 C -0.134 4.134 17 C -0.101 4.101 18 C -0.163 4.163 19 C 0.031 3.969 20 C -0.104 4.104 21 C -0.062 4.062 22 C -0.192 4.192 23 C -0.051 4.051 24 N -0.194 5.194 25 C -0.041 4.041 26 N -0.164 5.164 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.245 0.755 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 17.327 -22.302 0.024 28.242 hybrid contribution 0.565 1.270 -0.023 1.390 sum 17.892 -21.032 0.001 27.613 Atomic orbital electron populations 1.69910 1.06325 1.26961 1.50993 1.25027 0.94743 0.99229 0.94463 0.86778 0.80417 0.83537 0.78591 1.20241 1.21370 1.18878 1.21092 0.89287 0.94523 1.51100 0.90984 1.19504 0.97304 0.91383 0.96678 1.21713 0.90404 1.01120 1.01907 1.21761 0.96419 0.80709 1.02203 1.46034 1.06396 1.10523 1.72276 1.17853 0.83188 0.86652 0.77514 1.90790 1.55664 1.44244 1.50561 1.21216 0.90704 0.93025 0.99575 1.22223 0.95965 0.98323 0.96861 1.21583 1.00736 0.91820 0.95919 1.22260 0.92987 1.01116 0.99934 1.19490 0.91044 0.89755 0.96642 1.19476 0.93307 0.92832 1.04783 1.21843 0.91664 1.00980 0.91688 1.22247 1.01662 0.93550 1.01759 1.22926 0.92083 0.96309 0.93800 1.67721 1.02853 1.36263 1.12545 1.22860 0.99661 0.87229 0.94379 1.67446 1.38995 0.99261 1.10694 0.92687 0.96284 0.96710 0.92001 0.91983 0.91421 0.91436 0.75517 0.83062 0.83556 0.83893 0.83368 0.83984 0.82390 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.11 1.85 5.67 -4.04 -0.02 1.83 16 12 N -0.70 -10.25 5.55 -61.14 -0.34 -10.59 16 13 C 0.56 8.44 7.81 -12.18 -0.10 8.35 16 14 O -0.54 -9.45 16.32 5.36 0.09 -9.36 16 15 C 0.09 1.16 6.75 -83.04 -0.56 0.60 16 16 C -0.11 -1.11 9.63 -39.00 -0.38 -1.48 16 17 C -0.08 -0.52 10.16 -39.35 -0.40 -0.92 16 18 C -0.14 -1.01 9.47 -39.00 -0.37 -1.38 16 19 C 0.17 1.63 6.74 -82.96 -0.56 1.07 16 20 C -0.10 -0.92 5.89 -104.75 -0.62 -1.53 16 21 C -0.04 -0.32 9.69 -38.94 -0.38 -0.70 16 22 C -0.17 -1.31 10.10 -39.49 -0.40 -1.71 16 23 C 0.11 0.81 11.17 -17.50 -0.20 0.62 16 24 N -0.49 -4.47 10.35 -12.97 -0.13 -4.60 16 25 C 0.12 0.95 10.59 -17.19 -0.18 0.77 16 26 N -0.45 -5.20 8.68 -6.36 -0.06 -5.25 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.41 5.32 7.80 -40.82 -0.32 5.00 16 35 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 36 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.56 6.21 -52.49 -0.33 0.23 16 38 H 0.15 1.34 7.63 -52.48 -0.40 0.94 16 39 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.16 0.82 6.20 -52.49 -0.33 0.50 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -34.20 354.45 -8.91 -43.12 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.08 Total: 1.53 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.84 Total: -10.26 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.25 Total: -47.36 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.20 -8.91 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192194480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.644 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds