Wall clock time and date at job start Fri Apr 10 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00302 * 2 1 4 4 H 1.48497 * 109.47053 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.46705 * 29.99906 * 3 2 1 6 6 H 1.48498 * 109.46831 * 149.99595 * 3 2 1 7 7 C 1.37882 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00098 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46964 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46566 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99730 * 179.97438 * 12 11 10 14 14 O 1.21510 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.48176 * 120.00079 * 179.97438 * 13 12 11 16 16 C 1.39339 * 119.66405 * 180.02562 * 15 13 12 17 17 C 1.38697 * 119.26580 * 179.70168 * 16 15 13 18 18 C 1.38394 * 118.58160 * 0.51938 * 17 16 15 19 19 C 1.39644 * 119.26123 * 359.49882 * 18 17 16 20 20 C 1.48362 * 119.66034 * 180.25354 * 19 18 17 21 21 C 1.39780 * 120.53785 * 180.02562 * 20 19 18 22 22 C 1.38412 * 118.31144 * 180.02562 * 21 20 19 23 23 C 1.38308 * 119.28255 * 359.97438 * 22 21 20 24 24 N 1.31896 * 121.03442 * 0.02562 * 23 22 21 25 25 C 1.31744 * 121.84969 * 359.65737 * 24 23 22 26 26 N 1.32326 * 120.67786 * 0.23554 * 19 18 17 27 27 H 0.97007 * 119.99768 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47196 * 60.00019 * 9 7 2 29 29 H 1.09002 * 109.47359 * 299.99751 * 9 7 2 30 30 H 1.08994 * 109.47208 * 59.99670 * 10 9 7 31 31 H 1.09002 * 109.46819 * 300.00102 * 10 9 7 32 32 H 1.08994 * 109.47693 * 59.99642 * 11 10 9 33 33 H 1.09002 * 109.47169 * 299.99561 * 11 10 9 34 34 H 0.96994 * 120.00207 * 359.97438 * 12 11 10 35 35 H 1.08000 * 120.36508 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.71084 * 180.29603 * 17 16 15 37 37 H 1.08002 * 120.37294 * 179.78383 * 18 17 16 38 38 H 1.08007 * 120.84060 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.35588 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.48370 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.70279 * 180.31187 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5514 -2.6366 0.0012 12 7 6.0397 -4.0179 0.0004 13 6 7.3648 -4.2642 0.0008 14 8 8.1544 -3.3407 0.0022 15 6 7.8587 -5.6613 0.0006 16 6 9.2301 -5.9079 0.0015 17 6 9.6833 -7.2187 0.0076 18 6 8.7511 -8.2416 0.0017 19 6 7.3909 -7.9255 0.0004 20 6 6.3840 -9.0150 -0.0003 21 6 5.0178 -8.7195 -0.0022 22 6 4.1185 -9.7717 -0.0022 23 6 4.5961 -11.0697 -0.0010 24 7 5.8916 -11.3177 0.0007 25 6 6.7848 -10.3492 -0.0054 26 7 6.9909 -6.6641 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6809 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.6584 -3.1503 -0.8902 31 1 3.6577 -3.1507 0.8897 32 1 5.9141 -2.1231 0.8915 33 1 5.9155 -2.1225 -0.8884 34 1 5.4093 -4.7551 -0.0003 35 1 9.9323 -5.0873 0.0019 36 1 10.7411 -7.4365 0.0133 37 1 9.0720 -9.2728 0.0027 38 1 4.6726 -7.6961 -0.0035 39 1 3.0554 -9.5812 -0.0040 40 1 3.8974 -11.8932 -0.0014 41 1 7.8371 -10.5918 -0.0088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192194480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:49 Heat of formation + Delta-G solvation = 1.658527 kcal Electronic energy + Delta-G solvation = -23544.409334 eV Core-core repulsion = 20001.788720 eV Total energy + Delta-G solvation = -3542.620614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90814 -40.94177 -39.92123 -37.09312 -35.23691 -34.52667 -33.96867 -33.11019 -32.92314 -30.77014 -29.09511 -26.26267 -25.59809 -24.71273 -23.78568 -22.80543 -22.28491 -21.53849 -19.32537 -18.85041 -18.31349 -17.74371 -17.15794 -16.89659 -16.88087 -16.63477 -16.22025 -16.08737 -15.84620 -15.16337 -15.12090 -14.81952 -14.78717 -14.43169 -14.20232 -14.01532 -13.82980 -13.64591 -13.02297 -12.85158 -12.76791 -12.72566 -12.01329 -11.81337 -11.62775 -11.45055 -11.39363 -11.34926 -10.95737 -10.77026 -10.67457 -10.57054 -10.50066 -10.18754 -9.47470 -8.30118 -6.34238 -0.68286 -0.26224 0.27883 0.62828 1.36690 1.38242 1.50198 1.64103 1.99671 2.35932 2.64150 2.74778 3.02706 3.05637 3.32737 3.58494 3.71382 3.89139 3.91154 4.03496 4.04492 4.05727 4.15618 4.23614 4.34226 4.41040 4.46632 4.59209 4.80788 4.84189 4.84762 4.98421 5.01036 5.05302 5.17404 5.22963 5.29848 5.44773 5.49795 5.53113 5.63738 5.69315 6.26391 6.31176 6.66806 6.73655 6.93852 7.03675 7.30536 8.86410 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.002753 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.320820 B =10167.923746 C =12139.493630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.124 3.876 12 N -0.700 5.700 13 C 0.563 3.437 14 O -0.569 6.569 15 C 0.065 3.935 16 C -0.117 4.117 17 C -0.063 4.063 18 C -0.127 4.127 19 C 0.154 3.846 20 C -0.112 4.112 21 C -0.055 4.055 22 C -0.175 4.175 23 C 0.101 3.899 24 N -0.506 5.506 25 C 0.119 3.881 26 N -0.471 5.471 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.416 0.584 35 H 0.152 0.848 36 H 0.188 0.812 37 H 0.182 0.818 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.285 -24.007 0.002 31.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.049 4.049 10 C -0.138 4.138 11 C 0.001 3.999 12 N -0.350 5.350 13 C 0.349 3.651 14 O -0.448 6.448 15 C -0.073 4.073 16 C -0.138 4.138 17 C -0.088 4.088 18 C -0.147 4.147 19 C 0.015 3.985 20 C -0.115 4.115 21 C -0.081 4.081 22 C -0.195 4.195 23 C -0.055 4.055 24 N -0.214 5.214 25 C -0.040 4.040 26 N -0.183 5.183 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.170 0.830 36 H 0.206 0.794 37 H 0.199 0.801 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.200 0.800 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 20.054 -23.847 0.011 31.159 hybrid contribution -0.336 1.564 -0.020 1.600 sum 19.718 -22.283 -0.009 29.755 Atomic orbital electron populations 1.70059 1.08260 1.28166 1.52657 1.25993 0.95601 1.03476 0.94154 0.85686 0.79556 0.78385 0.79225 1.19194 1.21019 1.16995 1.21456 0.91890 0.93260 1.50361 0.94544 1.19458 0.94094 0.94342 0.96966 1.21483 0.91923 0.98383 1.02059 1.21440 0.94584 0.81933 1.01963 1.45914 1.06866 1.09851 1.72405 1.18295 0.82635 0.87856 0.76308 1.90754 1.56280 1.45643 1.52156 1.20861 0.91848 0.91634 1.02957 1.22386 0.94802 1.00014 0.96598 1.22031 1.02752 0.90140 0.93870 1.22709 0.91648 1.03134 0.97183 1.19793 0.92580 0.89070 0.97078 1.19580 0.93164 0.93308 1.05462 1.21957 0.92493 1.01065 0.92611 1.22448 1.02382 0.93315 1.01305 1.23361 0.92248 0.97012 0.92841 1.67788 1.03551 1.36768 1.13299 1.23272 1.00916 0.86470 0.93320 1.67303 1.39506 1.00048 1.11425 0.92480 0.95903 0.96001 0.91887 0.91917 0.91737 0.91675 0.74717 0.83038 0.79441 0.80079 0.84325 0.82382 0.80000 0.79582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 2 C 0.00 0.27 5.47 84.66 0.46 0.73 16 3 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.53 -30.46 9.66 25.60 0.25 -30.21 16 8 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.10 -3.76 5.27 30.60 0.16 -3.60 16 11 C 0.12 4.10 5.67 86.38 0.49 4.59 16 12 N -0.70 -20.69 5.55 -465.65 -2.58 -23.27 16 13 C 0.56 17.07 7.81 86.88 0.68 17.75 16 14 O -0.57 -20.32 16.32 -3.75 -0.06 -20.38 16 15 C 0.07 1.59 6.75 41.93 0.28 1.87 16 16 C -0.12 -2.12 9.63 22.64 0.22 -1.90 16 17 C -0.06 -0.64 10.16 22.42 0.23 -0.42 16 18 C -0.13 -1.35 9.47 22.65 0.21 -1.13 16 19 C 0.15 2.72 6.74 42.11 0.28 3.01 16 20 C -0.11 -1.90 5.89 -19.95 -0.12 -2.01 16 21 C -0.05 -0.99 9.69 22.68 0.22 -0.77 16 22 C -0.18 -2.53 10.10 22.33 0.23 -2.31 16 23 C 0.10 1.41 11.17 84.70 0.95 2.35 16 24 N -0.51 -8.32 10.35 -194.95 -2.02 -10.33 16 25 C 0.12 1.65 10.59 84.96 0.90 2.55 16 26 N -0.47 -10.68 8.68 -174.04 -1.51 -12.19 16 27 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 28 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 29 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.42 11.08 7.80 -92.71 -0.72 10.35 16 35 H 0.15 2.66 7.63 -2.91 -0.02 2.64 16 36 H 0.19 0.37 8.06 -2.91 -0.02 0.34 16 37 H 0.18 0.45 6.21 -2.91 -0.02 0.43 16 38 H 0.14 2.65 7.63 -2.91 -0.02 2.63 16 39 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.19 1.23 6.20 -2.91 -0.02 1.21 16 Total: -1.00 -76.19 354.45 1.86 -74.33 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.28 Total: 14.78 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.56 Total: -9.87 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -5.81 Total: -105.22 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -76.19 1.86 -74.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192194480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.987 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds