Wall clock time and date at job start Fri Apr 10 2020 22:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36878 * 120.75775 * 2 1 4 4 C 1.39371 * 119.38853 * 180.29996 * 3 2 1 5 5 N 1.38472 * 119.52938 * 179.69422 * 4 3 2 6 6 N 1.32633 * 120.93821 * 359.71064 * 4 3 2 7 7 C 1.31647 * 121.64038 * 0.02562 * 6 4 3 8 8 C 1.39663 * 120.50835 * 0.02562 * 7 6 4 9 9 C 1.47438 * 120.48397 * 179.97438 * 8 7 6 10 10 O 1.21625 * 120.00198 * 139.14249 * 9 8 7 11 11 N 1.34774 * 119.99976 * 319.14788 * 9 8 7 12 12 C 1.36915 * 119.99916 * 5.16484 * 11 9 8 13 13 H 1.08007 * 119.99725 * 320.42293 * 12 11 9 14 14 C 1.39015 * 120.00372 * 140.42805 * 12 11 9 15 15 N 1.31384 * 119.99957 * 161.03163 * 14 12 11 16 16 Si 1.86795 * 119.99671 * 341.02617 * 14 12 11 17 17 H 1.48509 * 109.47083 * 94.76250 * 16 14 12 18 18 H 1.48504 * 109.47308 * 214.76029 * 16 14 12 19 19 H 1.48495 * 109.47499 * 334.76251 * 16 14 12 20 20 C 1.46495 * 120.00541 * 185.16166 * 11 9 8 21 21 C 1.50705 * 109.46796 * 84.25932 * 20 11 9 22 22 C 1.38230 * 119.99904 * 84.96988 * 21 20 11 23 23 C 1.38235 * 120.00405 * 179.97438 * 22 21 20 24 24 C 1.38241 * 119.99407 * 0.08294 * 23 22 21 25 25 C 1.38230 * 120.00053 * 359.87270 * 24 23 22 26 26 C 1.38230 * 120.00185 * 264.94097 * 21 20 11 27 27 H 1.09004 * 109.46640 * 269.21942 * 1 2 3 28 28 H 1.09002 * 109.47319 * 29.21568 * 1 2 3 29 29 H 1.09004 * 109.47371 * 149.21967 * 1 2 3 30 30 H 1.08005 * 120.30293 * 359.97438 * 3 2 1 31 31 H 0.97002 * 120.00061 * 180.02562 * 5 4 3 32 32 H 0.96998 * 120.00092 * 0.02562 * 5 4 3 33 33 H 1.07996 * 119.74148 * 179.97438 * 7 6 4 34 34 H 0.97006 * 119.99934 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.46789 * 324.26532 * 20 11 9 36 36 H 1.08993 * 109.47644 * 204.26353 * 20 11 9 37 37 H 1.07999 * 119.99946 * 359.69361 * 22 21 20 38 38 H 1.07997 * 120.00485 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.99704 * 179.97438 * 24 23 22 40 40 H 1.08009 * 119.99898 * 180.02562 * 25 24 23 41 41 H 1.08006 * 119.99930 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1762 0.0000 4 6 3.6003 1.1429 -0.0064 5 7 4.3113 2.3311 -0.0128 6 7 4.2548 -0.0106 -0.0066 7 6 3.6208 -1.1644 -0.0015 8 6 2.2248 -1.2063 0.0040 9 6 1.5153 -2.4987 0.0092 10 8 0.5270 -2.6471 0.7023 11 7 1.9620 -3.5157 -0.7541 12 6 3.1325 -3.3849 -1.4521 13 1 3.3722 -2.4484 -1.9339 14 6 4.0126 -4.4574 -1.5408 15 7 4.9268 -4.4806 -2.4841 16 14 3.8952 -5.8653 -0.3188 17 1 3.0627 -6.9521 -0.8942 18 1 5.2562 -6.3845 -0.0296 19 1 3.2736 -5.3786 0.9389 20 6 1.1952 -4.7612 -0.8368 21 6 0.1185 -4.6197 -1.8818 22 6 0.4088 -4.8646 -3.2108 23 6 -0.5788 -4.7353 -4.1693 24 6 -1.8565 -4.3594 -3.7988 25 6 -2.1470 -4.1153 -2.4696 26 6 -1.1595 -4.2455 -1.5111 27 1 -0.3633 -0.0140 1.0276 28 1 -0.3634 0.8969 -0.5016 29 1 -0.3634 -0.8829 -0.5259 30 1 1.6844 2.1214 -0.0004 31 1 5.2812 2.3159 -0.0176 32 1 3.8396 3.1787 -0.0125 33 1 4.1846 -2.0855 -0.0023 34 1 5.5412 -5.2288 -2.5458 35 1 0.7378 -4.9711 0.1300 36 1 1.8607 -5.5802 -1.1094 37 1 1.4084 -5.1526 -3.5010 38 1 -0.3519 -4.9263 -5.2078 39 1 -2.6281 -4.2579 -4.5476 40 1 -3.1454 -3.8220 -2.1800 41 1 -1.3866 -4.0549 -0.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194349988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:54 Heat of formation + Delta-G solvation = 40.916503 kcal Electronic energy + Delta-G solvation = -25913.314568 eV Core-core repulsion = 22372.396307 eV Total energy + Delta-G solvation = -3540.918261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.10242 -39.02075 -37.90519 -35.18281 -34.43554 -32.99940 -32.26210 -31.11113 -30.37353 -28.94749 -27.38547 -25.82141 -24.97838 -22.98258 -22.01030 -21.57450 -20.81861 -19.25138 -17.58281 -17.25089 -16.57868 -16.54508 -15.84239 -15.34029 -14.78882 -14.69753 -14.50176 -14.37379 -13.93902 -13.56540 -13.40468 -13.06450 -12.87567 -12.69184 -12.62453 -12.38220 -12.23694 -12.07867 -11.81364 -11.57391 -11.39596 -11.02921 -10.80126 -10.52573 -10.35052 -10.02934 -10.00790 -9.46983 -9.00527 -8.94785 -8.62415 -8.41101 -8.19630 -7.84633 -7.39475 -6.52968 -4.14574 1.71759 1.81110 1.91096 1.91669 3.01027 3.18694 3.25505 3.74505 3.83537 4.05641 4.13358 4.48885 4.63178 4.90762 5.13610 5.34329 5.35686 5.38446 5.46441 5.55579 5.67044 5.73223 5.81590 5.87562 6.01900 6.06902 6.11637 6.16867 6.26696 6.33331 6.47030 6.49749 6.57774 6.60596 6.94169 6.95516 6.97601 7.15777 7.23305 7.29740 7.51399 7.57926 7.73973 8.01074 8.20214 8.72319 8.87430 9.27379 9.60754 10.55869 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.006354 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.566129 B = 4405.516137 C = 5878.822448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.035 3.965 3 C -0.261 4.261 4 C 0.406 3.594 5 N -0.854 5.854 6 N -0.557 5.557 7 C 0.210 3.790 8 C -0.213 4.213 9 C 0.540 3.460 10 O -0.588 6.588 11 N -0.454 5.454 12 C -0.347 4.347 13 H 0.107 0.893 14 C 0.070 3.930 15 N -0.852 5.852 16 Si 0.867 3.133 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.257 1.257 20 C 0.137 3.863 21 C -0.085 4.085 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.133 4.133 26 C -0.100 4.100 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.401 0.599 32 H 0.403 0.597 33 H 0.183 0.817 34 H 0.276 0.724 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 5.775 0.835 8.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.027 3.973 3 C -0.286 4.286 4 C 0.169 3.831 5 N -0.397 5.397 6 N -0.275 5.275 7 C 0.052 3.948 8 C -0.221 4.221 9 C 0.330 3.670 10 O -0.472 6.472 11 N -0.173 5.173 12 C -0.474 4.474 13 H 0.124 0.876 14 C -0.139 4.139 15 N -0.486 5.486 16 Si 0.693 3.307 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.181 1.181 20 C 0.014 3.986 21 C -0.086 4.086 22 C -0.110 4.110 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.118 4.118 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.230 0.770 32 H 0.232 0.768 33 H 0.200 0.800 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.940 5.563 1.070 8.209 hybrid contribution -0.444 -0.373 0.208 0.616 sum -6.384 5.190 1.278 8.327 Atomic orbital electron populations 1.20772 0.90430 1.02358 1.02879 1.19723 0.96321 0.91237 0.90012 1.20671 0.92689 0.98545 1.16681 1.18499 0.88241 0.87028 0.89338 1.42044 1.09460 1.04375 1.83833 1.67392 1.40242 0.97301 1.22596 1.23401 0.91146 0.94859 0.85400 1.20441 0.95120 0.93757 1.12745 1.17875 0.84798 0.84371 0.79978 1.90608 1.29186 1.83702 1.43745 1.43552 1.20610 1.12133 1.41051 1.19127 0.94328 1.02538 1.31376 0.87557 1.25327 0.95228 0.97723 0.95602 1.69730 1.18741 1.31745 1.28374 0.87082 0.77647 0.82470 0.83463 1.19885 1.21166 1.18125 1.20632 0.92048 0.88930 0.96949 1.20291 0.94507 0.98743 0.95108 1.21189 0.99242 0.98105 0.92416 1.21075 0.93425 1.01204 0.99079 1.21023 0.96653 1.01086 0.95977 1.21032 0.98955 1.01826 0.93280 1.21190 0.92589 0.98166 0.99868 0.90439 0.92416 0.90460 0.85889 0.77031 0.76827 0.80043 0.91305 0.90490 0.90463 0.85560 0.86648 0.86951 0.86803 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 8.97 36.00 0.32 -1.46 16 2 C 0.04 0.66 5.91 -104.31 -0.62 0.04 16 3 C -0.26 -4.25 9.54 -39.65 -0.38 -4.63 16 4 C 0.41 6.83 7.73 -155.25 -1.20 5.63 16 5 N -0.85 -10.29 9.05 31.11 0.28 -10.01 16 6 N -0.56 -11.04 10.38 -12.12 -0.13 -11.17 16 7 C 0.21 4.49 8.95 -17.10 -0.15 4.34 16 8 C -0.21 -4.57 5.32 -104.82 -0.56 -5.13 16 9 C 0.54 12.42 6.60 -12.51 -0.08 12.34 16 10 O -0.59 -13.88 14.53 5.26 0.08 -13.80 16 11 N -0.45 -10.55 2.15 -117.31 -0.25 -10.81 16 12 C -0.35 -8.56 6.90 -14.99 -0.10 -8.66 16 13 H 0.11 2.87 6.60 -52.48 -0.35 2.52 16 14 C 0.07 1.73 5.31 -17.45 -0.09 1.64 16 15 N -0.85 -22.31 13.96 55.50 0.77 -21.53 16 16 Si 0.87 19.41 24.93 -169.99 -4.24 15.17 16 17 H -0.27 -5.88 6.70 56.52 0.38 -5.50 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.14 2.96 4.08 -5.19 -0.02 2.94 16 21 C -0.09 -1.70 5.41 -104.63 -0.57 -2.26 16 22 C -0.09 -1.74 9.72 -39.59 -0.38 -2.12 16 23 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 24 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 25 C -0.13 -2.09 10.05 -39.59 -0.40 -2.49 16 26 C -0.10 -1.81 9.63 -39.59 -0.38 -2.19 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.08 1.44 6.70 -51.93 -0.35 1.10 16 30 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.40 4.44 8.95 -40.82 -0.37 4.08 16 32 H 0.40 3.53 8.81 -40.82 -0.36 3.17 16 33 H 0.18 4.12 6.18 -52.49 -0.32 3.79 16 34 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.08 1.63 7.44 -51.93 -0.39 1.24 16 36 H 0.08 1.69 3.55 -51.93 -0.18 1.51 16 37 H 0.13 2.54 8.06 -52.49 -0.42 2.11 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 41 H 0.13 2.28 7.76 -52.48 -0.41 1.88 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -28.84 340.95 -8.59 -37.43 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -4.84 Total: 16.46 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -5.41 Total: -6.89 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.68 Total: -53.52 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.24 Total: 15.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.84 -8.59 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194349988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.350 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds