Wall clock time and date at job start Fri Apr 10 2020 22:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36878 * 120.75775 * 2 1 4 4 C 1.39371 * 119.38853 * 180.29996 * 3 2 1 5 5 N 1.38472 * 119.52938 * 179.69422 * 4 3 2 6 6 N 1.32633 * 120.93821 * 359.71064 * 4 3 2 7 7 C 1.31647 * 121.64038 * 0.02562 * 6 4 3 8 8 C 1.39663 * 120.50835 * 0.02562 * 7 6 4 9 9 C 1.47438 * 120.48397 * 179.97438 * 8 7 6 10 10 O 1.21625 * 120.00198 * 139.14249 * 9 8 7 11 11 N 1.34774 * 119.99976 * 319.14788 * 9 8 7 12 12 C 1.36915 * 119.99916 * 5.16484 * 11 9 8 13 13 H 1.08007 * 119.99725 * 320.42293 * 12 11 9 14 14 C 1.39015 * 120.00372 * 140.42805 * 12 11 9 15 15 N 1.31384 * 119.99957 * 161.03163 * 14 12 11 16 16 Si 1.86795 * 119.99671 * 341.02617 * 14 12 11 17 17 H 1.48509 * 109.47083 * 94.76250 * 16 14 12 18 18 H 1.48504 * 109.47308 * 214.76029 * 16 14 12 19 19 H 1.48495 * 109.47499 * 334.76251 * 16 14 12 20 20 C 1.46495 * 120.00541 * 185.16166 * 11 9 8 21 21 C 1.50705 * 109.46796 * 84.25932 * 20 11 9 22 22 C 1.38230 * 119.99904 * 84.96988 * 21 20 11 23 23 C 1.38235 * 120.00405 * 179.97438 * 22 21 20 24 24 C 1.38241 * 119.99407 * 0.08294 * 23 22 21 25 25 C 1.38230 * 120.00053 * 359.87270 * 24 23 22 26 26 C 1.38230 * 120.00185 * 264.94097 * 21 20 11 27 27 H 1.09004 * 109.46640 * 269.21942 * 1 2 3 28 28 H 1.09002 * 109.47319 * 29.21568 * 1 2 3 29 29 H 1.09004 * 109.47371 * 149.21967 * 1 2 3 30 30 H 1.08005 * 120.30293 * 359.97438 * 3 2 1 31 31 H 0.97002 * 120.00061 * 180.02562 * 5 4 3 32 32 H 0.96998 * 120.00092 * 0.02562 * 5 4 3 33 33 H 1.07996 * 119.74148 * 179.97438 * 7 6 4 34 34 H 0.97006 * 119.99934 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.46789 * 324.26532 * 20 11 9 36 36 H 1.08993 * 109.47644 * 204.26353 * 20 11 9 37 37 H 1.07999 * 119.99946 * 359.69361 * 22 21 20 38 38 H 1.07997 * 120.00485 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.99704 * 179.97438 * 24 23 22 40 40 H 1.08009 * 119.99898 * 180.02562 * 25 24 23 41 41 H 1.08006 * 119.99930 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1762 0.0000 4 6 3.6003 1.1429 -0.0064 5 7 4.3113 2.3311 -0.0128 6 7 4.2548 -0.0106 -0.0066 7 6 3.6208 -1.1644 -0.0015 8 6 2.2248 -1.2063 0.0040 9 6 1.5153 -2.4987 0.0092 10 8 0.5270 -2.6471 0.7023 11 7 1.9620 -3.5157 -0.7541 12 6 3.1325 -3.3849 -1.4521 13 1 3.3722 -2.4484 -1.9339 14 6 4.0126 -4.4574 -1.5408 15 7 4.9268 -4.4806 -2.4841 16 14 3.8952 -5.8653 -0.3188 17 1 3.0627 -6.9521 -0.8942 18 1 5.2562 -6.3845 -0.0296 19 1 3.2736 -5.3786 0.9389 20 6 1.1952 -4.7612 -0.8368 21 6 0.1185 -4.6197 -1.8818 22 6 0.4088 -4.8646 -3.2108 23 6 -0.5788 -4.7353 -4.1693 24 6 -1.8565 -4.3594 -3.7988 25 6 -2.1470 -4.1153 -2.4696 26 6 -1.1595 -4.2455 -1.5111 27 1 -0.3633 -0.0140 1.0276 28 1 -0.3634 0.8969 -0.5016 29 1 -0.3634 -0.8829 -0.5259 30 1 1.6844 2.1214 -0.0004 31 1 5.2812 2.3159 -0.0176 32 1 3.8396 3.1787 -0.0125 33 1 4.1846 -2.0855 -0.0023 34 1 5.5412 -5.2288 -2.5458 35 1 0.7378 -4.9711 0.1300 36 1 1.8607 -5.5802 -1.1094 37 1 1.4084 -5.1526 -3.5010 38 1 -0.3519 -4.9263 -5.2078 39 1 -2.6281 -4.2579 -4.5476 40 1 -3.1454 -3.8220 -2.1800 41 1 -1.3866 -4.0549 -0.4725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194349988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:53 Heat of formation + Delta-G solvation = 23.604785 kcal Electronic energy + Delta-G solvation = -25914.065260 eV Core-core repulsion = 22372.396307 eV Total energy + Delta-G solvation = -3541.668953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65780 -40.49480 -39.43024 -36.93855 -35.76721 -34.43145 -34.10414 -32.65790 -31.71469 -30.36809 -28.72493 -27.46746 -26.78735 -24.50614 -23.36885 -22.98550 -22.22917 -21.01738 -19.31802 -18.65725 -18.13472 -17.85687 -17.36502 -16.97735 -16.38062 -16.17196 -15.92489 -15.83521 -15.49171 -15.09992 -14.92868 -14.64244 -14.49634 -14.19184 -14.07969 -13.81927 -13.66372 -13.54491 -13.32079 -13.24757 -12.94148 -12.70341 -12.38404 -12.03544 -11.94037 -11.70407 -11.46620 -11.22224 -10.71891 -10.38463 -10.22711 -9.76482 -9.69573 -9.61792 -8.74532 -8.48160 -6.10655 0.21370 0.44804 0.46650 0.56496 1.18057 1.31214 1.40646 2.03022 2.16979 2.55706 2.65489 2.88747 3.07794 3.17605 3.72756 3.89865 3.97085 3.98056 4.17722 4.21600 4.28418 4.34408 4.37209 4.39903 4.52915 4.70782 4.74752 4.79914 4.81305 4.91341 5.02145 5.14088 5.17645 5.22660 5.41327 5.56316 5.62562 5.64480 5.72203 5.82976 6.07899 6.18234 6.24411 6.42791 6.58501 6.95141 7.39629 7.40817 7.76772 8.64077 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.006354 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.566129 B = 4405.516137 C = 5878.822448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.027 3.973 3 C -0.248 4.248 4 C 0.405 3.595 5 N -0.829 5.829 6 N -0.580 5.580 7 C 0.199 3.801 8 C -0.248 4.248 9 C 0.538 3.462 10 O -0.599 6.599 11 N -0.463 5.463 12 C -0.330 4.330 13 H 0.077 0.923 14 C 0.039 3.961 15 N -0.889 5.889 16 Si 0.913 3.087 17 H -0.260 1.260 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.136 3.864 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.111 4.111 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.168 0.832 31 H 0.408 0.592 32 H 0.423 0.577 33 H 0.155 0.845 34 H 0.280 0.720 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 7.886 0.367 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.019 3.981 3 C -0.272 4.272 4 C 0.166 3.834 5 N -0.373 5.373 6 N -0.300 5.300 7 C 0.041 3.959 8 C -0.256 4.256 9 C 0.329 3.671 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.458 4.458 13 H 0.095 0.905 14 C -0.166 4.166 15 N -0.526 5.526 16 Si 0.738 3.262 17 H -0.185 1.185 18 H -0.208 1.208 19 H -0.191 1.191 20 C 0.014 3.986 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.130 4.130 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.186 0.814 31 H 0.238 0.762 32 H 0.256 0.744 33 H 0.172 0.828 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.158 0.842 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.226 7.711 0.603 11.291 hybrid contribution 0.224 -0.817 0.347 0.915 sum -8.002 6.894 0.950 10.605 Atomic orbital electron populations 1.20746 0.88871 1.02809 1.03265 1.20060 0.97560 0.90950 0.89556 1.21052 0.92387 0.99433 1.14318 1.18833 0.89149 0.87332 0.88089 1.42007 1.09960 1.03683 1.81622 1.67317 1.40831 0.97849 1.23958 1.22939 0.91152 0.94883 0.86882 1.20454 0.95231 0.94157 1.15729 1.18219 0.84583 0.84900 0.79400 1.90569 1.29681 1.84091 1.44138 1.43623 1.20506 1.12903 1.41257 1.18769 0.95144 1.01374 1.30472 0.90540 1.25709 0.94975 0.99419 0.96503 1.69784 1.19985 1.32885 1.29907 0.86349 0.77650 0.80791 0.81373 1.18549 1.20827 1.19115 1.20612 0.92401 0.87963 0.97583 1.20183 0.94836 1.00954 0.94921 1.21133 0.99252 0.99883 0.92956 1.21380 0.93426 1.00241 0.99640 1.21476 0.96784 0.98733 0.96576 1.21413 0.99669 1.00199 0.93073 1.21207 0.92595 0.98871 1.00303 0.89897 0.88758 0.93181 0.81419 0.76165 0.74423 0.82784 0.91023 0.90856 0.91348 0.87828 0.84218 0.82820 0.83472 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.14 8.97 71.24 0.64 -2.50 16 2 C 0.03 0.97 5.91 -19.67 -0.12 0.86 16 3 C -0.25 -7.33 9.54 22.22 0.21 -7.12 16 4 C 0.41 12.86 7.73 133.23 1.03 13.89 16 5 N -0.83 -17.30 9.05 -55.49 -0.50 -17.81 16 6 N -0.58 -23.22 10.38 -192.25 -2.00 -25.22 16 7 C 0.20 8.95 8.95 85.06 0.76 9.71 16 8 C -0.25 -10.95 5.32 -19.99 -0.11 -11.05 16 9 C 0.54 25.82 6.60 86.67 0.57 26.39 16 10 O -0.60 -29.17 14.53 -4.11 -0.06 -29.23 16 11 N -0.46 -22.67 2.15 -643.32 -1.38 -24.05 16 12 C -0.33 -17.31 6.90 84.09 0.58 -16.73 16 13 H 0.08 4.44 6.60 -2.91 -0.02 4.42 16 14 C 0.04 2.04 5.31 84.95 0.45 2.49 16 15 N -0.89 -48.86 13.96 21.68 0.30 -48.56 16 16 Si 0.91 41.83 24.93 68.60 1.71 43.54 16 17 H -0.26 -11.26 6.70 99.48 0.67 -10.59 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 C 0.14 6.18 4.08 85.64 0.35 6.53 16 21 C -0.11 -4.41 5.41 -19.87 -0.11 -4.52 16 22 C -0.11 -4.43 9.72 22.27 0.22 -4.22 16 23 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 24 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 25 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 26 C -0.11 -4.01 9.63 22.27 0.21 -3.80 16 27 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 28 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 29 H 0.05 1.84 6.70 -2.39 -0.02 1.82 16 30 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.41 7.94 8.95 -92.71 -0.83 7.11 16 32 H 0.42 5.56 8.81 -92.71 -0.82 4.74 16 33 H 0.16 7.60 6.18 -2.91 -0.02 7.58 16 34 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 35 H 0.07 3.27 7.44 -2.39 -0.02 3.25 16 36 H 0.07 3.14 3.55 -2.39 -0.01 3.13 16 37 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 41 H 0.12 4.33 7.76 -2.91 -0.02 4.31 16 Total: -1.00 -66.62 340.95 2.85 -63.78 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.59 Total: 37.72 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.37 Total: -0.17 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -3.58 Total: -115.63 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.71 Total: 43.54 kcal Total: -66.62 2.85 -63.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194349988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.382 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds