Wall clock time and date at job start Fri Apr 10 2020 22:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34219 * 125.06008 * 2 1 4 4 C 1.46567 * 106.88693 * 179.97438 * 3 2 1 5 5 C 1.39574 * 133.94851 * 180.02562 * 4 3 2 6 6 C 1.37873 * 119.99146 * 179.97438 * 5 4 3 7 7 C 1.38362 * 120.58766 * 359.97438 * 6 5 4 8 8 C 1.39309 * 120.49894 * 0.25799 * 7 6 5 9 9 C 1.47506 * 120.20480 * 179.72073 * 8 7 6 10 10 O 1.21595 * 120.00199 * 235.01816 * 9 8 7 11 11 N 1.34777 * 119.99989 * 55.02472 * 9 8 7 12 12 C 1.46498 * 120.00245 * 185.55317 * 11 9 8 13 13 C 1.50709 * 109.46766 * 89.99902 * 12 11 9 14 14 H 1.07995 * 119.99699 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99828 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00215 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99854 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46904 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46842 * 120.00421 * 17 15 13 20 20 H 1.48502 * 109.46796 * 240.00481 * 17 15 13 21 21 C 1.46503 * 120.00000 * 5.55968 * 11 9 8 22 22 C 1.52995 * 109.47352 * 94.96447 * 21 11 9 23 23 C 1.47201 * 109.47133 * 180.02562 * 22 21 11 24 24 N 7.25315 * 130.87220 * 107.53004 * 2 1 3 25 25 C 1.40492 * 119.58220 * 359.49468 * 8 7 6 26 26 N 1.36896 * 125.06206 * 180.02562 * 2 1 3 27 27 H 0.97001 * 125.01518 * 359.95412 * 26 2 1 28 28 H 1.09001 * 109.46750 * 89.96984 * 1 2 3 29 29 H 1.08994 * 109.47046 * 209.97411 * 1 2 3 30 30 H 1.09003 * 109.47080 * 329.97793 * 1 2 3 31 31 H 1.07995 * 126.55760 * 0.04127 * 3 2 1 32 32 H 1.08003 * 120.00281 * 359.94980 * 5 4 3 33 33 H 1.08000 * 119.70363 * 180.02562 * 6 5 4 34 34 H 1.08004 * 119.74718 * 179.97438 * 7 6 5 35 35 H 1.08993 * 109.47607 * 209.99734 * 12 11 9 36 36 H 1.08992 * 109.47204 * 330.00490 * 12 11 9 37 37 H 0.97003 * 120.00296 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.46997 * 214.97171 * 21 11 9 39 39 H 1.09001 * 109.46799 * 334.96570 * 21 11 9 40 40 H 1.09004 * 109.47448 * 299.99732 * 22 21 11 41 41 H 1.09001 * 109.47068 * 60.00287 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2781 1.0987 0.0000 4 6 3.6706 0.6415 0.0006 5 6 4.9044 1.2942 0.0014 6 6 6.0720 0.5609 0.0024 7 6 6.0347 -0.8222 0.0032 8 6 4.8158 -1.4967 -0.0024 9 6 4.7837 -2.9714 -0.0077 10 8 4.1691 -3.5630 -0.8742 11 7 5.4354 -3.6631 0.9480 12 6 5.5061 -5.1245 0.8751 13 6 6.7329 -5.5300 0.0992 14 1 7.3938 -4.7745 -0.2992 15 6 7.0118 -6.8652 -0.1009 16 7 6.2072 -7.7851 0.3848 17 14 8.5328 -7.3678 -1.0620 18 1 9.2665 -6.1527 -1.4983 19 1 9.4132 -8.1949 -0.1982 20 1 8.1273 -8.1553 -2.2539 21 6 6.0730 -2.9534 2.0598 22 6 5.1172 -2.9121 3.2537 23 6 5.7576 -2.1985 4.3706 24 7 6.2533 -1.6520 5.2299 25 6 3.6174 -0.7635 0.0019 26 7 2.2935 -1.1205 -0.0005 27 1 1.9629 -2.0325 -0.0003 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 1.9375 2.1235 0.0006 32 1 4.9444 2.3735 0.0007 33 1 7.0241 1.0707 0.0033 34 1 6.9577 -1.3832 0.0035 35 1 5.5610 -5.5364 1.8827 36 1 4.6168 -5.5068 0.3743 37 1 6.4032 -8.7246 0.2437 38 1 6.9882 -3.4722 2.3448 39 1 6.3132 -1.9359 1.7513 40 1 4.2019 -2.3931 2.9687 41 1 4.8769 -3.9295 3.5622 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198559555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:57 Heat of formation + Delta-G solvation = 46.753623 kcal Electronic energy + Delta-G solvation = -25204.117890 eV Core-core repulsion = 21663.452746 eV Total energy + Delta-G solvation = -3540.665144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39506 -39.21438 -36.85942 -36.78466 -35.25477 -32.95637 -32.10939 -31.14743 -30.83656 -29.48729 -27.25836 -26.82732 -24.18385 -23.76206 -21.98957 -21.61461 -20.31650 -19.00597 -17.58640 -17.41678 -16.71362 -16.46057 -15.89576 -15.41942 -14.96923 -14.80291 -14.66235 -14.44545 -14.25881 -13.81314 -13.56431 -13.23529 -13.05603 -12.83767 -12.74711 -12.58138 -12.39038 -12.30730 -12.16294 -11.79987 -11.60975 -11.40020 -11.30701 -11.20676 -10.96469 -10.78648 -10.66626 -10.23153 -9.73358 -9.62728 -9.11306 -8.51161 -8.12295 -7.92498 -7.61460 -6.12612 -4.17525 0.94529 1.67373 2.56306 2.79111 2.89382 3.11173 3.26178 3.27803 3.34661 3.38420 3.64364 3.95630 4.22720 4.38970 4.56457 4.79227 4.99692 5.08011 5.10200 5.14329 5.20654 5.22646 5.27301 5.30576 5.43888 5.47109 5.53066 5.64502 5.85930 5.88524 5.94993 6.01038 6.11132 6.43226 6.56445 6.69179 6.78700 6.90492 7.15621 7.29404 7.38354 7.53279 7.63247 7.83510 8.12407 8.18711 8.75046 8.91364 9.48403 10.95506 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.004349 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.073503 B = 6436.691688 C = 7101.967311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.079 3.921 3 C -0.206 4.206 4 C -0.112 4.112 5 C -0.061 4.061 6 C -0.150 4.150 7 C -0.071 4.071 8 C -0.127 4.127 9 C 0.552 3.448 10 O -0.534 6.534 11 N -0.587 5.587 12 C 0.243 3.757 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.107 3.893 22 C -0.048 4.048 23 C 0.220 3.780 24 N -0.445 5.445 25 C 0.137 3.863 26 N -0.583 5.583 27 H 0.419 0.581 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 16.520 1.801 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C -0.231 4.231 4 C -0.117 4.117 5 C -0.080 4.080 6 C -0.170 4.170 7 C -0.091 4.091 8 C -0.133 4.133 9 C 0.339 3.661 10 O -0.411 6.411 11 N -0.318 5.318 12 C 0.124 3.876 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.019 4.019 22 C -0.089 4.089 23 C -0.098 4.098 24 N -0.122 5.122 25 C 0.028 3.972 26 N -0.186 5.186 27 H 0.257 0.743 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.725 16.659 2.639 18.552 hybrid contribution 0.604 -1.120 -0.874 1.544 sum -7.121 15.539 1.766 17.184 Atomic orbital electron populations 1.20474 0.87776 1.03645 1.03211 1.20363 0.93467 0.85850 1.03238 1.21385 0.90178 0.97586 1.13983 1.19124 0.93777 0.91531 1.07227 1.20574 0.90359 0.99331 0.97755 1.20783 0.98030 0.93455 1.04688 1.21018 0.96062 0.94389 0.97584 1.19113 0.91352 0.93457 1.09352 1.18179 0.79647 0.86054 0.82205 1.90781 1.43054 1.70567 1.36708 1.48153 1.51954 1.09773 1.21900 1.19394 0.98591 0.71693 0.97878 1.21449 1.08522 0.92006 1.34865 0.92210 1.24911 0.96979 0.96362 0.95656 1.69928 1.37119 1.00743 1.45402 0.86457 0.82658 0.78630 0.79796 1.19704 1.20926 1.20881 1.21552 0.95550 0.99255 0.85518 1.19803 0.99179 1.00709 0.89209 1.28899 0.93526 0.93281 0.94108 1.81043 1.09311 1.10362 1.11496 1.17877 0.83876 0.93392 1.02073 1.41721 1.04017 1.08700 1.64136 0.74314 0.90419 0.91237 0.89777 0.83713 0.85994 0.85596 0.84833 0.94557 0.93471 0.92691 0.88899 0.89442 0.87952 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.39 36.01 0.37 -0.29 16 2 C 0.08 0.86 7.09 -81.74 -0.58 0.28 16 3 C -0.21 -2.35 10.96 -37.64 -0.41 -2.76 16 4 C -0.11 -1.50 6.37 -105.15 -0.67 -2.17 16 5 C -0.06 -0.73 10.09 -39.22 -0.40 -1.12 16 6 C -0.15 -1.78 10.00 -39.67 -0.40 -2.18 16 7 C -0.07 -0.99 7.45 -39.14 -0.29 -1.29 16 8 C -0.13 -2.04 4.91 -104.87 -0.52 -2.56 16 9 C 0.55 10.78 7.13 -12.48 -0.09 10.69 16 10 O -0.53 -12.60 16.64 5.28 0.09 -12.52 16 11 N -0.59 -11.07 2.46 -176.31 -0.43 -11.50 16 12 C 0.24 5.74 5.23 -5.19 -0.03 5.71 16 13 C -0.53 -14.04 9.39 -34.44 -0.32 -14.36 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.11 1.55 5.18 -4.04 -0.02 1.53 16 22 C -0.05 -0.57 6.02 -29.52 -0.18 -0.75 16 23 C 0.22 2.94 15.42 -20.87 -0.32 2.61 16 24 N -0.44 -6.94 18.51 42.02 0.78 -6.16 16 25 C 0.14 2.06 6.99 -83.76 -0.59 1.47 16 26 N -0.58 -7.72 6.04 -6.76 -0.04 -7.76 16 27 H 0.42 5.39 8.96 -40.82 -0.37 5.03 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.80 7.56 -52.48 -0.40 1.41 16 35 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.05 1.27 7.35 -51.93 -0.38 0.89 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 39 H 0.09 1.15 4.42 -51.93 -0.23 0.92 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -33.17 361.36 -8.12 -41.29 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.14 Total: 3.22 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -4.53 Total: -3.55 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 1.04 Total: -49.97 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.17 -8.12 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198559555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.041 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds