Wall clock time and date at job start Fri Apr 10 2020 22:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86802 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46985 * 299.99831 * 3 2 1 6 6 H 1.48498 * 109.46870 * 59.99976 * 3 2 1 7 7 C 1.39936 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 175.55595 * 7 2 1 9 9 C 1.41410 * 119.99619 * 355.55769 * 7 2 1 10 10 C 1.40777 * 120.21070 * 34.72977 * 9 7 2 11 11 C 1.37650 * 119.88964 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32737 * 359.73184 * 11 10 9 13 13 C 1.39281 * 120.42229 * 0.54714 * 12 11 10 14 14 N 1.39832 * 119.94672 * 179.72535 * 13 12 11 15 15 C 1.34780 * 119.99430 * 214.93177 * 14 13 12 16 16 O 1.21613 * 120.00233 * 355.95917 * 15 14 13 17 17 C 1.47364 * 119.99754 * 175.96401 * 15 14 13 18 18 N 1.31617 * 125.84702 * 359.69004 * 17 15 14 19 19 C 1.33090 * 109.20896 * 179.86820 * 18 17 15 20 20 C 1.35566 * 108.38533 * 0.39588 * 19 18 17 21 21 N 1.35949 * 107.07380 * 359.76386 * 20 19 18 22 22 C 1.46503 * 126.48868 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.46658 * 264.95583 * 22 21 20 24 24 C 1.53000 * 117.49729 * 243.61868 * 23 22 21 25 25 C 1.52999 * 60.00227 * 252.51109 * 24 23 22 26 26 C 1.38306 * 120.09701 * 359.45117 * 13 12 11 27 27 H 0.97005 * 119.99607 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.05464 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.83270 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.78841 * 180.29294 * 12 11 10 31 31 H 0.96993 * 119.99894 * 35.20545 * 14 13 12 32 32 H 1.08003 * 125.80442 * 180.15805 * 19 18 17 33 33 H 1.08002 * 126.45998 * 179.78130 * 20 19 18 34 34 H 1.08997 * 109.46791 * 24.94722 * 22 21 20 35 35 H 1.08995 * 109.47248 * 144.95213 * 22 21 20 36 36 H 1.09003 * 115.55304 * 29.32649 * 23 22 21 37 37 H 1.09004 * 117.49826 * 0.02562 * 24 23 22 38 38 H 1.08997 * 117.49976 * 145.02214 * 24 23 22 39 39 H 1.08999 * 117.50429 * 252.51085 * 25 24 23 40 40 H 1.09005 * 117.52043 * 107.47606 * 25 24 23 41 41 H 1.08001 * 120.15759 * 180.25726 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0855 -1.2133 -0.0719 9 6 1.3040 -2.4346 0.0959 10 6 0.0403 -2.5735 -0.5088 11 6 -0.6394 -3.7665 -0.4113 12 6 -0.0837 -4.8341 0.2745 13 6 1.1631 -4.7095 0.8828 14 7 1.7121 -5.7918 1.5775 15 6 2.4538 -5.5770 2.6821 16 8 2.7071 -4.4404 3.0330 17 6 2.9580 -6.7194 3.4646 18 7 2.7497 -7.9906 3.1945 19 6 3.3570 -8.7385 4.1127 20 6 3.9649 -7.9148 5.0015 21 7 3.7171 -6.6403 4.5985 22 6 4.1771 -5.4140 5.2550 23 6 3.0848 -4.8975 6.1936 24 6 2.4665 -3.5347 5.8754 25 6 3.4174 -3.6844 7.0646 26 6 1.8613 -3.5188 0.7958 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3952 -1.7454 -1.0483 29 1 -1.6090 -3.8720 -0.8752 30 1 -0.6225 -5.7677 0.3415 31 1 1.5624 -6.6967 1.2621 32 1 3.3613 -9.8180 4.1464 33 1 4.5381 -8.2147 5.8663 34 1 5.0791 -5.6258 5.8291 35 1 4.3956 -4.6581 4.5008 36 1 2.4322 -5.6595 6.6198 37 1 2.8376 -3.0062 4.9972 38 1 1.4068 -3.3998 6.0923 39 1 2.9834 -3.6481 8.0638 40 1 4.4146 -3.2546 6.9694 41 1 2.8300 -3.4225 1.2635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199450066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:04 Heat of formation + Delta-G solvation = 77.980690 kcal Electronic energy + Delta-G solvation = -25063.208219 eV Core-core repulsion = 21523.897183 eV Total energy + Delta-G solvation = -3539.311037 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24827 -39.39564 -37.64158 -37.06209 -34.54244 -33.60480 -32.88873 -30.13297 -29.77924 -27.98945 -27.34328 -25.26585 -23.58740 -22.37018 -21.59749 -21.31936 -20.95851 -20.41978 -19.43920 -17.97562 -17.37314 -16.19468 -15.90951 -15.52846 -15.24113 -15.05948 -14.59173 -14.42921 -14.24733 -13.86738 -13.72872 -13.61208 -12.96429 -12.86992 -12.83419 -12.13271 -11.90692 -11.74170 -11.42914 -11.20473 -11.16354 -10.64176 -10.59760 -10.45142 -10.30523 -10.24378 -10.00320 -9.82425 -9.79591 -9.50188 -9.07860 -8.91989 -8.59414 -7.35870 -6.87267 -6.55314 -4.35023 1.41511 2.42890 2.56478 2.82179 3.02233 3.12822 3.17327 3.23175 3.54823 3.70813 3.77770 4.02840 4.45485 4.54997 4.65993 4.73404 4.82384 4.95057 5.06232 5.09376 5.25811 5.39419 5.47703 5.57713 5.68770 5.93241 6.06962 6.16677 6.26529 6.32571 6.40009 6.54212 6.74990 6.87928 7.00556 7.04444 7.11343 7.33669 7.51844 7.73814 7.82213 7.98301 8.12561 8.19336 8.29332 8.62401 8.72849 8.99349 9.00956 10.35418 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.004189 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.843667 B = 6682.650780 C = 8096.400586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.075 0.925 9 C 0.112 3.888 10 C -0.157 4.157 11 C -0.100 4.100 12 C -0.243 4.243 13 C 0.140 3.860 14 N -0.641 5.641 15 C 0.594 3.406 16 O -0.509 6.509 17 C 0.158 3.842 18 N -0.453 5.453 19 C -0.029 4.029 20 C -0.038 4.038 21 N -0.413 5.413 22 C 0.132 3.868 23 C -0.177 4.177 24 C -0.153 4.153 25 C -0.174 4.174 26 C -0.197 4.197 27 H 0.276 0.724 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.409 0.591 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -10.627 11.035 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.093 0.907 9 C 0.109 3.891 10 C -0.177 4.177 11 C -0.119 4.119 12 C -0.265 4.265 13 C 0.049 3.951 14 N -0.284 5.284 15 C 0.378 3.622 16 O -0.383 6.383 17 C -0.102 4.102 18 N -0.175 5.175 19 C -0.182 4.182 20 C -0.175 4.175 21 N -0.093 5.093 22 C 0.010 3.990 23 C -0.196 4.196 24 C -0.190 4.190 25 C -0.212 4.212 26 C -0.218 4.218 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.245 0.755 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.215 -9.730 10.699 15.740 hybrid contribution 0.621 0.304 0.862 1.105 sum 6.836 -9.426 11.561 16.408 Atomic orbital electron populations 1.69765 1.07237 1.28444 1.38574 1.25828 0.94898 1.01012 0.92584 0.86181 0.80623 0.81028 0.78330 1.18646 1.20037 1.20035 1.19504 0.94615 0.90032 1.44962 0.90720 1.17555 0.92106 0.91571 0.87848 1.21660 0.97439 0.96206 1.02423 1.20552 0.98140 0.93685 0.99490 1.20166 0.95750 0.99437 1.11113 1.17443 0.93348 0.87494 0.96819 1.43013 1.49955 1.10275 1.25167 1.16470 0.79517 0.85725 0.80482 1.90829 1.56820 1.21547 1.69123 1.22836 1.02303 0.93577 0.91528 1.70197 1.20908 0.99968 1.26397 1.22378 1.01847 0.99938 0.94033 1.22988 1.07591 0.83217 1.03744 1.45312 1.36958 1.07237 1.19771 1.21721 0.96094 0.84645 0.96525 1.22423 1.01883 0.92889 1.02400 1.23118 0.98876 0.97534 0.99426 1.22969 1.01458 1.00650 0.96124 1.21213 1.01604 0.93704 1.05254 0.91307 0.85279 0.88848 0.89000 0.75499 0.80735 0.80268 0.88916 0.86828 0.87874 0.86736 0.88952 0.88736 0.88606 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.44 10.60 55.55 0.59 -20.86 16 2 C 0.07 1.84 5.42 -17.35 -0.09 1.74 16 3 Si 0.91 19.37 29.56 -169.99 -5.03 14.35 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.51 9.04 -37.74 -0.34 -12.85 16 8 H 0.07 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.11 3.04 5.55 -106.85 -0.59 2.45 16 10 C -0.16 -4.11 8.67 -38.84 -0.34 -4.45 16 11 C -0.10 -2.32 10.01 -39.69 -0.40 -2.72 16 12 C -0.24 -5.40 9.97 -39.09 -0.39 -5.79 16 13 C 0.14 3.20 6.29 -83.80 -0.53 2.67 16 14 N -0.64 -12.36 5.33 -10.90 -0.06 -12.42 16 15 C 0.59 11.30 7.65 -12.55 -0.10 11.20 16 16 O -0.51 -10.63 10.47 5.27 0.06 -10.57 16 17 C 0.16 2.56 7.78 -154.53 -1.20 1.36 16 18 N -0.45 -6.92 10.89 -11.27 -0.12 -7.05 16 19 C -0.03 -0.34 11.85 -17.96 -0.21 -0.56 16 20 C -0.04 -0.40 11.56 -16.68 -0.19 -0.59 16 21 N -0.41 -5.43 2.77 -114.44 -0.32 -5.75 16 22 C 0.13 1.53 5.75 -4.04 -0.02 1.51 16 23 C -0.18 -2.09 6.01 -90.62 -0.54 -2.63 16 24 C -0.15 -2.10 9.39 -26.73 -0.25 -2.35 16 25 C -0.17 -1.79 10.25 -26.73 -0.27 -2.06 16 26 C -0.20 -4.99 8.43 -38.68 -0.33 -5.32 16 27 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 28 H 0.13 3.49 6.13 -52.48 -0.32 3.17 16 29 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.41 6.94 8.51 -40.82 -0.35 6.59 16 32 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.11 1.56 6.38 -51.93 -0.33 1.23 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.11 1.86 7.08 -51.93 -0.37 1.49 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.11 2.90 6.23 -52.49 -0.33 2.57 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -30.22 347.96 -10.48 -40.70 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -5.05 Total: 14.74 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -5.80 Total: -18.39 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.09 Total: -46.07 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.06 Total: -10.57 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.22 -10.48 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199450066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.680 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds