Wall clock time and date at job start Fri Apr 10 2020 22:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86802 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46985 * 299.99831 * 3 2 1 6 6 H 1.48498 * 109.46870 * 59.99976 * 3 2 1 7 7 C 1.39936 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00115 * 175.55595 * 7 2 1 9 9 C 1.41410 * 119.99619 * 355.55769 * 7 2 1 10 10 C 1.40777 * 120.21070 * 34.72977 * 9 7 2 11 11 C 1.37650 * 119.88964 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32737 * 359.73184 * 11 10 9 13 13 C 1.39281 * 120.42229 * 0.54714 * 12 11 10 14 14 N 1.39832 * 119.94672 * 179.72535 * 13 12 11 15 15 C 1.34780 * 119.99430 * 214.93177 * 14 13 12 16 16 O 1.21613 * 120.00233 * 355.95917 * 15 14 13 17 17 C 1.47364 * 119.99754 * 175.96401 * 15 14 13 18 18 N 1.31617 * 125.84702 * 359.69004 * 17 15 14 19 19 C 1.33090 * 109.20896 * 179.86820 * 18 17 15 20 20 C 1.35566 * 108.38533 * 0.39588 * 19 18 17 21 21 N 1.35949 * 107.07380 * 359.76386 * 20 19 18 22 22 C 1.46503 * 126.48868 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.46658 * 264.95583 * 22 21 20 24 24 C 1.53000 * 117.49729 * 243.61868 * 23 22 21 25 25 C 1.52999 * 60.00227 * 252.51109 * 24 23 22 26 26 C 1.38306 * 120.09701 * 359.45117 * 13 12 11 27 27 H 0.97005 * 119.99607 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.05464 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.83270 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.78841 * 180.29294 * 12 11 10 31 31 H 0.96993 * 119.99894 * 35.20545 * 14 13 12 32 32 H 1.08003 * 125.80442 * 180.15805 * 19 18 17 33 33 H 1.08002 * 126.45998 * 179.78130 * 20 19 18 34 34 H 1.08997 * 109.46791 * 24.94722 * 22 21 20 35 35 H 1.08995 * 109.47248 * 144.95213 * 22 21 20 36 36 H 1.09003 * 115.55304 * 29.32649 * 23 22 21 37 37 H 1.09004 * 117.49826 * 0.02562 * 24 23 22 38 38 H 1.08997 * 117.49976 * 145.02214 * 24 23 22 39 39 H 1.08999 * 117.50429 * 252.51085 * 25 24 23 40 40 H 1.09005 * 117.52043 * 107.47606 * 25 24 23 41 41 H 1.08001 * 120.15759 * 180.25726 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0855 -1.2133 -0.0719 9 6 1.3040 -2.4346 0.0959 10 6 0.0403 -2.5735 -0.5088 11 6 -0.6394 -3.7665 -0.4113 12 6 -0.0837 -4.8341 0.2745 13 6 1.1631 -4.7095 0.8828 14 7 1.7121 -5.7918 1.5775 15 6 2.4538 -5.5770 2.6821 16 8 2.7071 -4.4404 3.0330 17 6 2.9580 -6.7194 3.4646 18 7 2.7497 -7.9906 3.1945 19 6 3.3570 -8.7385 4.1127 20 6 3.9649 -7.9148 5.0015 21 7 3.7171 -6.6403 4.5985 22 6 4.1771 -5.4140 5.2550 23 6 3.0848 -4.8975 6.1936 24 6 2.4665 -3.5347 5.8754 25 6 3.4174 -3.6844 7.0646 26 6 1.8613 -3.5188 0.7958 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3952 -1.7454 -1.0483 29 1 -1.6090 -3.8720 -0.8752 30 1 -0.6225 -5.7677 0.3415 31 1 1.5624 -6.6967 1.2621 32 1 3.3613 -9.8180 4.1464 33 1 4.5381 -8.2147 5.8663 34 1 5.0791 -5.6258 5.8291 35 1 4.3956 -4.6581 4.5008 36 1 2.4322 -5.6595 6.6198 37 1 2.8376 -3.0062 4.9972 38 1 1.4068 -3.3998 6.0923 39 1 2.9834 -3.6481 8.0638 40 1 4.4146 -3.2546 6.9694 41 1 2.8300 -3.4225 1.2635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199450066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:03 Heat of formation + Delta-G solvation = 61.600511 kcal Electronic energy + Delta-G solvation = -25063.918517 eV Core-core repulsion = 21523.897183 eV Total energy + Delta-G solvation = -3540.021335 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.28000 -40.98379 -38.92328 -38.54392 -36.24068 -34.98359 -34.41799 -31.74303 -31.35722 -29.57330 -28.35838 -27.24657 -24.96813 -23.34058 -22.98387 -22.61515 -22.42649 -21.73611 -20.87626 -19.54720 -18.85116 -17.50776 -17.33573 -17.05482 -16.80615 -16.42596 -16.12752 -15.74054 -15.52340 -15.09534 -14.95550 -14.70577 -14.65700 -14.46014 -13.96435 -13.78505 -13.66860 -13.02269 -12.92413 -12.84780 -12.54346 -12.43983 -12.20529 -12.07219 -11.67007 -11.56261 -11.32241 -11.26813 -11.00944 -10.89753 -10.80881 -10.68995 -9.57625 -9.31902 -8.72611 -8.49188 -6.40817 0.22340 0.94391 1.03803 1.36269 1.39045 1.46387 1.52323 1.70629 2.21585 2.26316 2.38806 2.78252 2.79019 3.29329 3.59084 3.69128 3.75397 3.84579 4.03495 4.11077 4.17176 4.42049 4.46549 4.49640 4.58390 4.59509 4.75017 4.94975 4.99227 5.09705 5.11653 5.12878 5.16121 5.22884 5.26689 5.36372 5.63584 5.75203 5.83274 5.89446 6.06403 6.14248 6.34133 6.45565 6.70250 6.86277 6.96112 7.00434 7.16872 8.42967 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.004189 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.843667 B = 6682.650780 C = 8096.400586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.083 3.917 10 C -0.182 4.182 11 C -0.097 4.097 12 C -0.237 4.237 13 C 0.148 3.852 14 N -0.639 5.639 15 C 0.590 3.410 16 O -0.537 6.537 17 C 0.112 3.888 18 N -0.466 5.466 19 C -0.043 4.043 20 C -0.005 4.005 21 N -0.411 5.411 22 C 0.130 3.870 23 C -0.168 4.168 24 C -0.191 4.191 25 C -0.139 4.139 26 C -0.217 4.217 27 H 0.284 0.716 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.421 0.579 32 H 0.209 0.791 33 H 0.232 0.768 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 -12.756 13.365 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.080 3.920 10 C -0.202 4.202 11 C -0.116 4.116 12 C -0.258 4.258 13 C 0.055 3.945 14 N -0.284 5.284 15 C 0.376 3.624 16 O -0.412 6.412 17 C -0.146 4.146 18 N -0.188 5.188 19 C -0.196 4.196 20 C -0.144 4.144 21 N -0.091 5.091 22 C 0.009 3.991 23 C -0.187 4.187 24 C -0.228 4.228 25 C -0.176 4.176 26 C -0.238 4.238 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.259 0.741 32 H 0.226 0.774 33 H 0.248 0.752 34 H 0.155 0.845 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.238 -11.883 13.015 19.052 hybrid contribution 0.316 0.735 0.242 0.835 sum 7.553 -11.148 13.257 18.896 Atomic orbital electron populations 1.69832 1.08501 1.29772 1.38768 1.26683 0.95802 1.04129 0.91539 0.85106 0.78970 0.76291 0.78951 1.18674 1.18438 1.19272 1.19704 0.94432 0.91443 1.47462 0.91657 1.17875 0.93098 0.92276 0.88708 1.21598 0.97738 0.97157 1.03706 1.20882 0.99040 0.92771 0.98874 1.20544 0.95267 1.00458 1.09494 1.17515 0.93319 0.87601 0.96045 1.42915 1.50302 1.09803 1.25400 1.16926 0.78654 0.86529 0.80287 1.90830 1.57585 1.23135 1.69697 1.22093 1.05964 0.92840 0.93670 1.70128 1.21225 0.99843 1.27637 1.23093 1.01494 1.01563 0.93457 1.23876 1.05272 0.81407 1.03805 1.45488 1.36052 1.08690 1.18872 1.21827 0.97550 0.83811 0.95925 1.22421 1.01587 0.92276 1.02430 1.22928 0.98992 1.00280 1.00625 1.23072 1.00949 0.98115 0.95452 1.21150 1.01547 0.94961 1.06142 0.90542 0.86817 0.85774 0.85425 0.74113 0.77408 0.75205 0.84490 0.89773 0.87595 0.90353 0.90288 0.86595 0.87069 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.12 10.60 21.82 0.23 -45.89 16 2 C 0.03 1.62 5.42 85.25 0.46 2.08 16 3 Si 0.99 41.00 29.56 68.60 2.03 43.02 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.50 -28.96 9.04 23.46 0.21 -28.75 16 8 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 9 C 0.08 4.79 5.55 -21.31 -0.12 4.67 16 10 C -0.18 -9.93 8.67 22.75 0.20 -9.73 16 11 C -0.10 -4.54 10.01 22.20 0.22 -4.32 16 12 C -0.24 -10.41 9.97 22.59 0.23 -10.19 16 13 C 0.15 6.95 6.29 38.13 0.24 7.19 16 14 N -0.64 -25.27 5.33 -306.65 -1.63 -26.91 16 15 C 0.59 23.30 7.65 86.64 0.66 23.97 16 16 O -0.54 -24.01 10.47 -4.07 -0.04 -24.06 16 17 C 0.11 3.56 7.78 136.26 1.06 4.62 16 18 N -0.47 -13.47 10.89 -189.56 -2.06 -15.53 16 19 C -0.04 -0.86 11.85 83.88 0.99 0.14 16 20 C -0.01 -0.09 11.56 83.44 0.96 0.88 16 21 N -0.41 -9.93 2.77 -515.98 -1.43 -11.36 16 22 C 0.13 2.80 5.75 86.38 0.50 3.30 16 23 C -0.17 -3.76 6.01 -10.79 -0.06 -3.82 16 24 C -0.19 -5.52 9.39 30.59 0.29 -5.23 16 25 C -0.14 -2.58 10.25 30.60 0.31 -2.26 16 26 C -0.22 -11.72 8.43 22.85 0.19 -11.53 16 27 H 0.28 14.09 8.30 -92.70 -0.77 13.32 16 28 H 0.11 6.48 6.13 -2.91 -0.02 6.46 16 29 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.42 14.29 8.51 -92.71 -0.79 13.50 16 32 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.14 1.73 8.13 -2.39 -0.02 1.71 16 35 H 0.08 2.38 6.38 -2.39 -0.02 2.36 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.83 7.08 -2.38 -0.02 2.82 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.10 5.40 6.23 -2.91 -0.02 5.38 16 Total: -1.00 -72.21 347.96 3.72 -68.50 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: 0.28 Total: 41.20 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 6.35 Total: -28.98 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.90 Total: -99.68 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.04 Total: -24.06 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -72.21 3.72 -68.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199450066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.098 kcal (2) G-P(sol) polarization free energy of solvation -72.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds