Wall clock time and date at job start Fri Apr 10 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48505 * 109.46788 * 270.00154 * 3 2 1 5 5 H 1.48498 * 109.47321 * 29.99694 * 3 2 1 6 6 H 1.48499 * 109.47391 * 149.99898 * 3 2 1 7 7 C 1.39026 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99809 * 175.87064 * 7 2 1 9 9 N 1.36905 * 119.99737 * 355.59808 * 7 2 1 10 10 C 1.46505 * 120.00013 * 46.93320 * 9 7 2 11 11 C 1.50701 * 109.47180 * 85.23255 * 10 9 7 12 12 C 1.38238 * 120.00413 * 274.72073 * 11 10 9 13 13 C 1.38233 * 119.99930 * 179.76530 * 12 11 10 14 14 C 1.38234 * 120.00341 * 0.48345 * 13 12 11 15 15 C 1.38245 * 119.99614 * 359.79182 * 14 13 12 16 16 C 1.38229 * 119.99988 * 359.95456 * 15 14 13 17 17 C 1.34778 * 120.00322 * 226.92912 * 9 7 2 18 18 O 1.21604 * 119.99812 * 184.96137 * 17 9 7 19 19 C 1.47605 * 119.99546 * 4.95852 * 17 9 7 20 20 N 1.31897 * 126.57911 * 5.07322 * 19 17 9 21 21 N 1.28458 * 110.04446 * 179.88194 * 20 19 17 22 22 H 0.97005 * 124.87508 * 180.16577 * 21 20 19 23 23 C 1.35274 * 110.24726 * 0.40115 * 21 20 19 24 24 C 1.35039 * 107.08353 * 359.74561 * 23 21 20 25 25 C 1.50943 * 110.52848 * 180.02562 * 24 23 21 26 26 C 1.54515 * 104.96685 * 16.76901 * 25 24 23 27 27 C 1.51231 * 142.75830 * 179.72959 * 23 21 20 28 28 H 0.97003 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47411 * 205.23475 * 10 9 7 30 30 H 1.08999 * 109.46964 * 325.24041 * 10 9 7 31 31 H 1.07995 * 119.99929 * 359.97438 * 12 11 10 32 32 H 1.08001 * 119.99959 * 180.25099 * 13 12 11 33 33 H 1.08001 * 120.00592 * 179.76630 * 14 13 12 34 34 H 1.08004 * 119.99677 * 179.97438 * 15 14 13 35 35 H 1.08003 * 119.99990 * 180.02562 * 16 15 14 36 36 H 1.08998 * 110.34120 * 135.64172 * 25 24 23 37 37 H 1.09002 * 110.33625 * 257.79281 * 25 24 23 38 38 H 1.08995 * 110.93349 * 92.69257 * 26 25 24 39 39 H 1.09005 * 110.92505 * 216.31824 * 26 25 24 40 40 H 1.09001 * 110.33040 * 44.29229 * 27 23 21 41 41 H 1.09001 * 110.41030 * 282.11636 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4403 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 3.0868 -1.2051 -0.0668 9 7 1.3275 -2.3878 0.0921 10 6 0.1520 -2.6234 -0.7501 11 6 0.5924 -3.1527 -2.0906 12 6 0.9629 -2.2753 -3.0925 13 6 1.3714 -2.7611 -4.3204 14 6 1.4000 -4.1240 -4.5499 15 6 1.0240 -5.0013 -3.5498 16 6 0.6205 -4.5156 -2.3202 17 6 1.7379 -3.3366 0.9568 18 8 1.1889 -4.4215 0.9747 19 6 2.8539 -3.0588 1.8821 20 7 3.4768 -1.9068 2.0388 21 7 4.3963 -2.0209 2.9285 22 1 4.9841 -1.3038 3.2138 23 6 4.4307 -3.2858 3.4067 24 6 3.4642 -3.9783 2.7664 25 6 3.4335 -5.4097 3.2446 26 6 4.2251 -5.4042 4.5715 27 6 5.1538 -4.1836 4.3855 28 1 -0.4850 0.8400 0.0004 29 1 -0.5001 -3.3518 -0.2682 30 1 -0.3888 -1.6873 -0.8890 31 1 0.9364 -1.2104 -2.9147 32 1 1.6648 -2.0757 -5.1019 33 1 1.7155 -4.5034 -5.5106 34 1 1.0459 -6.0661 -3.7292 35 1 0.3271 -5.2010 -1.5387 36 1 2.4059 -5.7293 3.4178 37 1 3.9152 -6.0627 2.5168 38 1 3.5588 -5.2605 5.4220 39 1 4.8039 -6.3211 4.6833 40 1 5.2980 -3.6694 5.3357 41 1 6.1139 -4.4973 3.9758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201236938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:08 Heat of formation + Delta-G solvation = 84.398738 kcal Electronic energy + Delta-G solvation = -25718.595567 eV Core-core repulsion = 22179.562838 eV Total energy + Delta-G solvation = -3539.032729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12775 -38.84549 -37.66900 -36.42063 -34.73139 -31.77206 -31.39364 -30.29700 -30.15729 -28.20928 -27.26887 -25.81555 -24.69956 -22.48681 -21.79237 -21.33427 -20.39570 -19.30650 -18.92204 -17.27404 -16.70228 -16.08333 -15.76780 -15.37448 -14.69480 -14.43586 -14.27300 -14.16280 -14.09557 -13.31618 -13.03201 -12.84511 -12.68758 -12.58887 -12.40913 -12.02433 -11.91165 -11.41035 -11.31307 -11.13772 -11.02867 -10.95313 -10.88575 -10.62290 -10.37134 -10.29230 -10.03846 -9.81556 -9.00106 -8.68195 -8.50219 -8.20957 -8.05105 -7.97684 -7.39724 -6.22008 -4.05353 2.06057 2.12328 2.48498 2.77764 3.17726 3.24564 3.29460 3.30338 4.15075 4.43160 4.56779 4.63402 4.86326 4.99553 5.10776 5.14999 5.40392 5.52266 5.54180 5.59558 5.69161 5.70819 5.85893 5.93067 6.02077 6.02968 6.23750 6.30455 6.33379 6.41932 6.43374 6.56930 6.71026 6.74325 6.89317 7.13104 7.14787 7.19660 7.34062 7.56488 7.62718 7.72297 7.79336 8.05246 8.52941 8.70038 9.17672 9.54530 9.96279 10.73842 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.005876 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.340197 B = 4763.966897 C = 6504.545438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.047 3.953 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.297 4.297 8 H 0.093 0.907 9 N -0.420 5.420 10 C 0.130 3.870 11 C -0.073 4.073 12 C -0.091 4.091 13 C -0.134 4.134 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.107 4.107 17 C 0.550 3.450 18 O -0.593 6.593 19 C 0.042 3.958 20 N -0.208 5.208 21 N -0.386 5.386 22 H 0.434 0.566 23 C -0.049 4.049 24 C -0.173 4.173 25 C -0.042 4.042 26 C -0.116 4.116 27 C -0.031 4.031 28 H 0.269 0.731 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -4.984 2.771 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.157 4.157 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.426 4.426 8 H 0.111 0.889 9 N -0.137 5.137 10 C 0.008 3.992 11 C -0.074 4.074 12 C -0.110 4.110 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.126 4.126 17 C 0.338 3.662 18 O -0.477 6.477 19 C -0.119 4.119 20 N -0.041 5.041 21 N -0.098 5.098 22 H 0.276 0.724 23 C -0.175 4.175 24 C -0.183 4.183 25 C -0.080 4.080 26 C -0.154 4.154 27 C -0.070 4.070 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.914 -4.265 2.373 8.463 hybrid contribution 0.885 0.718 0.337 1.189 sum 7.799 -3.547 2.710 8.986 Atomic orbital electron populations 1.69495 1.06110 1.27348 1.48415 1.25486 0.95211 0.99574 0.95434 0.86077 0.79837 0.81450 0.78206 1.20582 1.21057 1.19183 1.19476 0.91960 0.81849 1.49330 0.88912 1.43247 1.25799 1.14150 1.30476 1.20910 0.89169 1.03650 0.85499 1.20624 0.97174 0.92889 0.96757 1.21159 0.97271 1.00285 0.92271 1.21057 1.01604 0.95175 0.97402 1.20942 1.02219 0.93695 0.98673 1.21014 1.01329 0.98822 0.94071 1.21254 0.99193 0.95626 0.96494 1.17330 0.83039 0.85230 0.80622 1.90600 1.59192 1.24929 1.73008 1.21520 1.00026 0.89074 1.01304 1.74599 1.00647 1.23204 1.05699 1.43121 1.27955 1.08622 1.30071 0.72422 1.22046 1.03582 0.87332 1.04497 1.20828 0.99388 0.97188 1.00932 1.20283 1.01059 0.91618 0.95072 1.22421 0.97757 0.96930 0.98252 1.20489 0.97681 0.93130 0.95683 0.92026 0.92062 0.84670 0.85797 0.87085 0.87306 0.87149 0.86093 0.90593 0.90974 0.90897 0.90442 0.91235 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.78 10.77 55.50 0.60 -22.18 16 2 C 0.05 1.19 5.41 -17.45 -0.09 1.09 16 3 Si 0.92 20.03 29.56 -169.99 -5.02 15.01 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.30 -7.66 7.40 -14.99 -0.11 -7.77 16 8 H 0.09 2.44 6.75 -52.49 -0.35 2.09 16 9 N -0.42 -10.88 2.51 -117.25 -0.29 -11.18 16 10 C 0.13 3.18 5.22 -5.19 -0.03 3.16 16 11 C -0.07 -1.61 5.43 -104.62 -0.57 -2.18 16 12 C -0.09 -1.89 9.72 -39.58 -0.38 -2.27 16 13 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 14 C -0.14 -2.29 10.05 -39.58 -0.40 -2.69 16 15 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 16 C -0.11 -2.19 9.68 -39.58 -0.38 -2.58 16 17 C 0.55 14.36 7.63 -12.44 -0.09 14.26 16 18 O -0.59 -16.00 16.49 5.27 0.09 -15.91 16 19 C 0.04 0.99 6.84 -82.81 -0.57 0.42 16 20 N -0.21 -4.58 9.40 33.39 0.31 -4.27 16 21 N -0.39 -6.60 6.84 33.61 0.23 -6.37 16 22 H 0.43 5.59 8.96 -190.44 -1.71 3.88 16 23 C -0.05 -0.79 8.12 -81.95 -0.67 -1.46 16 24 C -0.17 -3.39 6.83 -104.43 -0.71 -4.10 16 25 C -0.04 -0.66 6.78 -26.97 -0.18 -0.84 16 26 C -0.12 -1.30 7.13 -25.16 -0.18 -1.48 16 27 C -0.03 -0.35 6.78 -26.84 -0.18 -0.53 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.06 1.52 7.26 -51.93 -0.38 1.15 16 30 H 0.14 3.47 5.17 -51.93 -0.27 3.21 16 31 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -31.14 345.59 -10.72 -41.86 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.49 Total: 10.36 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -5.35 Total: -12.52 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.85 Total: -44.00 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.14 -10.72 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201236938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.254 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds