Wall clock time and date at job start Fri Apr 10 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48505 * 109.46788 * 270.00154 * 3 2 1 5 5 H 1.48498 * 109.47321 * 29.99694 * 3 2 1 6 6 H 1.48499 * 109.47391 * 149.99898 * 3 2 1 7 7 C 1.39026 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99809 * 175.87064 * 7 2 1 9 9 N 1.36905 * 119.99737 * 355.59808 * 7 2 1 10 10 C 1.46505 * 120.00013 * 46.93320 * 9 7 2 11 11 C 1.50701 * 109.47180 * 85.23255 * 10 9 7 12 12 C 1.38238 * 120.00413 * 274.72073 * 11 10 9 13 13 C 1.38233 * 119.99930 * 179.76530 * 12 11 10 14 14 C 1.38234 * 120.00341 * 0.48345 * 13 12 11 15 15 C 1.38245 * 119.99614 * 359.79182 * 14 13 12 16 16 C 1.38229 * 119.99988 * 359.95456 * 15 14 13 17 17 C 1.34778 * 120.00322 * 226.92912 * 9 7 2 18 18 O 1.21604 * 119.99812 * 184.96137 * 17 9 7 19 19 C 1.47605 * 119.99546 * 4.95852 * 17 9 7 20 20 N 1.31897 * 126.57911 * 5.07322 * 19 17 9 21 21 N 1.28458 * 110.04446 * 179.88194 * 20 19 17 22 22 H 0.97005 * 124.87508 * 180.16577 * 21 20 19 23 23 C 1.35274 * 110.24726 * 0.40115 * 21 20 19 24 24 C 1.35039 * 107.08353 * 359.74561 * 23 21 20 25 25 C 1.50943 * 110.52848 * 180.02562 * 24 23 21 26 26 C 1.54515 * 104.96685 * 16.76901 * 25 24 23 27 27 C 1.51231 * 142.75830 * 179.72959 * 23 21 20 28 28 H 0.97003 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47411 * 205.23475 * 10 9 7 30 30 H 1.08999 * 109.46964 * 325.24041 * 10 9 7 31 31 H 1.07995 * 119.99929 * 359.97438 * 12 11 10 32 32 H 1.08001 * 119.99959 * 180.25099 * 13 12 11 33 33 H 1.08001 * 120.00592 * 179.76630 * 14 13 12 34 34 H 1.08004 * 119.99677 * 179.97438 * 15 14 13 35 35 H 1.08003 * 119.99990 * 180.02562 * 16 15 14 36 36 H 1.08998 * 110.34120 * 135.64172 * 25 24 23 37 37 H 1.09002 * 110.33625 * 257.79281 * 25 24 23 38 38 H 1.08995 * 110.93349 * 92.69257 * 26 25 24 39 39 H 1.09005 * 110.92505 * 216.31824 * 26 25 24 40 40 H 1.09001 * 110.33040 * 44.29229 * 27 23 21 41 41 H 1.09001 * 110.41030 * 282.11636 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4403 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 3.0868 -1.2051 -0.0668 9 7 1.3275 -2.3878 0.0921 10 6 0.1520 -2.6234 -0.7501 11 6 0.5924 -3.1527 -2.0906 12 6 0.9629 -2.2753 -3.0925 13 6 1.3714 -2.7611 -4.3204 14 6 1.4000 -4.1240 -4.5499 15 6 1.0240 -5.0013 -3.5498 16 6 0.6205 -4.5156 -2.3202 17 6 1.7379 -3.3366 0.9568 18 8 1.1889 -4.4215 0.9747 19 6 2.8539 -3.0588 1.8821 20 7 3.4768 -1.9068 2.0388 21 7 4.3963 -2.0209 2.9285 22 1 4.9841 -1.3038 3.2138 23 6 4.4307 -3.2858 3.4067 24 6 3.4642 -3.9783 2.7664 25 6 3.4335 -5.4097 3.2446 26 6 4.2251 -5.4042 4.5715 27 6 5.1538 -4.1836 4.3855 28 1 -0.4850 0.8400 0.0004 29 1 -0.5001 -3.3518 -0.2682 30 1 -0.3888 -1.6873 -0.8890 31 1 0.9364 -1.2104 -2.9147 32 1 1.6648 -2.0757 -5.1019 33 1 1.7155 -4.5034 -5.5106 34 1 1.0459 -6.0661 -3.7292 35 1 0.3271 -5.2010 -1.5387 36 1 2.4059 -5.7293 3.4178 37 1 3.9152 -6.0627 2.5168 38 1 3.5588 -5.2605 5.4220 39 1 4.8039 -6.3211 4.6833 40 1 5.2980 -3.6694 5.3357 41 1 6.1139 -4.4973 3.9758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201236938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:07 Heat of formation + Delta-G solvation = 66.650126 kcal Electronic energy + Delta-G solvation = -25719.365205 eV Core-core repulsion = 22179.562838 eV Total energy + Delta-G solvation = -3539.802367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.59601 -40.59842 -39.40228 -37.60681 -36.67395 -33.63961 -33.04953 -31.90355 -31.67116 -29.51105 -28.45286 -27.61043 -26.61147 -24.15257 -23.31733 -22.46995 -21.96250 -20.82164 -20.73356 -18.83789 -18.26204 -17.69714 -17.24976 -16.91092 -16.51402 -16.18400 -15.95541 -15.69069 -15.55808 -14.99552 -14.71289 -14.22071 -14.17904 -13.82569 -13.63762 -13.54251 -13.49702 -13.17729 -12.97684 -12.85611 -12.63540 -12.38271 -12.11164 -11.97958 -11.95020 -11.83901 -11.71703 -11.34412 -10.95792 -10.62643 -10.09003 -9.72614 -9.56185 -9.45171 -9.34542 -8.16924 -6.06835 0.53105 0.59871 0.87640 1.26795 1.42464 1.45272 1.56460 1.99728 2.32453 2.66559 2.82575 3.11602 3.27071 3.57195 3.81167 3.98212 4.09017 4.17234 4.25718 4.26286 4.37212 4.39721 4.47826 4.61421 4.76715 4.83262 4.86865 4.90210 5.03665 5.08872 5.19533 5.22041 5.24241 5.26833 5.36428 5.41939 5.58783 5.65831 5.67050 5.69561 5.94388 6.09582 6.24169 6.38270 6.54866 7.08894 7.23386 7.58599 7.99181 8.79270 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.005876 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.340197 B = 4763.966897 C = 6504.545438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.302 4.302 8 H 0.085 0.915 9 N -0.428 5.428 10 C 0.136 3.864 11 C -0.098 4.098 12 C -0.109 4.109 13 C -0.128 4.128 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.126 4.126 17 C 0.532 3.468 18 O -0.621 6.621 19 C -0.003 4.003 20 N -0.239 5.239 21 N -0.370 5.370 22 H 0.453 0.547 23 C -0.018 4.018 24 C -0.215 4.215 25 C -0.047 4.047 26 C -0.102 4.102 27 C -0.025 4.025 28 H 0.271 0.729 29 H 0.037 0.963 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -5.369 2.722 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.192 4.192 3 Si 0.802 3.198 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.431 4.431 8 H 0.102 0.898 9 N -0.145 5.145 10 C 0.013 3.987 11 C -0.099 4.099 12 C -0.128 4.128 13 C -0.146 4.146 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.145 4.145 17 C 0.321 3.679 18 O -0.507 6.507 19 C -0.162 4.162 20 N -0.074 5.074 21 N -0.084 5.084 22 H 0.299 0.701 23 C -0.145 4.145 24 C -0.225 4.225 25 C -0.085 4.085 26 C -0.139 4.139 27 C -0.063 4.063 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.157 -4.634 2.315 11.402 hybrid contribution -0.107 0.770 0.342 0.849 sum 10.050 -3.864 2.657 11.090 Atomic orbital electron populations 1.69630 1.07367 1.28065 1.49067 1.26202 0.95880 1.02310 0.94821 0.85154 0.78714 0.77371 0.78554 1.19606 1.20941 1.18525 1.19452 0.91590 0.82175 1.49876 0.89759 1.43456 1.25848 1.14425 1.30733 1.20719 0.88833 1.02148 0.86989 1.20435 0.99483 0.94055 0.95913 1.21096 0.98858 0.99219 0.93600 1.21414 0.99971 0.96635 0.96569 1.21436 0.99917 0.92830 0.99984 1.21377 0.99593 1.00892 0.92714 1.21215 1.00784 0.94648 0.97856 1.17897 0.83962 0.85007 0.81053 1.90536 1.60459 1.25770 1.73940 1.21403 1.00770 0.91245 1.02802 1.74412 1.02082 1.23230 1.07653 1.43122 1.26779 1.09897 1.28618 0.70101 1.22865 1.02100 0.86182 1.03380 1.21358 1.00504 0.99421 1.01219 1.20439 1.00786 0.89503 0.97803 1.22455 0.97477 0.98696 0.95316 1.20776 0.97953 0.91795 0.95806 0.91919 0.94417 0.86261 0.87560 0.83803 0.82719 0.83870 0.87867 0.92922 0.90964 0.90184 0.86858 0.87835 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.43 10.77 21.68 0.23 -49.20 16 2 C 0.01 0.47 5.41 84.95 0.46 0.93 16 3 Si 0.98 41.80 29.56 68.60 2.03 43.83 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.30 -16.42 7.40 84.09 0.62 -15.80 16 8 H 0.08 4.65 6.75 -2.91 -0.02 4.63 16 9 N -0.43 -23.88 2.51 -643.13 -1.61 -25.49 16 10 C 0.14 7.25 5.22 85.63 0.45 7.70 16 11 C -0.10 -4.59 5.43 -19.86 -0.11 -4.70 16 12 C -0.11 -4.65 9.72 22.27 0.22 -4.43 16 13 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 14 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 15 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 16 C -0.13 -5.40 9.68 22.27 0.22 -5.19 16 17 C 0.53 29.92 7.63 86.72 0.66 30.58 16 18 O -0.62 -36.41 16.49 -4.04 -0.07 -36.48 16 19 C 0.00 -0.14 6.84 42.39 0.29 0.15 16 20 N -0.24 -10.77 9.40 -48.26 -0.45 -11.23 16 21 N -0.37 -12.25 6.84 -47.56 -0.33 -12.57 16 22 H 0.45 10.74 8.96 -219.99 -1.97 8.77 16 23 C -0.02 -0.55 8.12 41.46 0.34 -0.21 16 24 C -0.21 -8.53 6.83 -19.74 -0.13 -8.67 16 25 C -0.05 -1.47 6.78 30.44 0.21 -1.26 16 26 C -0.10 -1.92 7.13 31.62 0.23 -1.70 16 27 C -0.02 -0.44 6.78 30.52 0.21 -0.23 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.04 2.09 7.26 -2.39 -0.02 2.07 16 30 H 0.12 6.70 5.17 -2.39 -0.01 6.69 16 31 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.34 345.59 3.22 -72.12 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.90 Total: 33.56 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 4.32 Total: -14.55 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -2.16 Total: -98.49 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.07 Total: -36.48 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -75.34 3.22 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201236938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.770 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds