Wall clock time and date at job start Fri Apr 10 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38280 * 119.93479 * 2 1 4 4 C 1.38115 * 120.07212 * 179.97438 * 3 2 1 5 5 C 1.38863 * 119.92823 * 0.02562 * 4 3 2 6 6 N 1.39941 * 120.06824 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00231 * 246.18467 * 6 5 4 8 8 C 1.34777 * 119.99689 * 66.18329 * 6 5 4 9 9 O 1.21587 * 120.00203 * 5.21708 * 8 6 5 10 10 N 1.34778 * 119.99961 * 185.21129 * 8 6 5 11 11 C 1.39452 * 119.99990 * 184.49506 * 10 8 6 12 12 C 1.38643 * 119.64755 * 174.64630 * 11 10 8 13 13 C 1.40823 * 118.67293 * 180.02562 * 12 11 10 14 14 C 1.41544 * 120.99789 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00138 * 149.68523 * 14 13 12 16 16 C 1.40036 * 119.99713 * 329.67782 * 14 13 12 17 17 N 1.30740 * 119.99831 * 167.37813 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 347.38291 * 16 14 13 19 19 H 1.48498 * 109.47238 * 92.49643 * 18 16 14 20 20 H 1.48500 * 109.47197 * 212.49876 * 18 16 14 21 21 H 1.48503 * 109.47218 * 332.49708 * 18 16 14 22 22 C 1.41162 * 118.00371 * 359.97438 * 13 12 11 23 23 C 1.36584 * 119.13274 * 0.02562 * 22 13 12 24 24 N 1.32069 * 121.25799 * 359.72231 * 23 22 13 25 25 C 1.38870 * 119.86246 * 0.27024 * 5 4 3 26 26 C 1.38113 * 119.92595 * 359.45022 * 25 5 4 27 27 H 1.09011 * 109.46807 * 89.99609 * 1 2 3 28 28 H 1.08994 * 109.47227 * 209.99637 * 1 2 3 29 29 H 1.08999 * 109.47291 * 330.00382 * 1 2 3 30 30 H 1.08002 * 119.96245 * 359.95597 * 3 2 1 31 31 H 1.08000 * 120.03313 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.47293 * 270.00186 * 7 6 5 33 33 H 1.09003 * 109.47152 * 29.99993 * 7 6 5 34 34 H 1.09001 * 109.47124 * 150.00269 * 7 6 5 35 35 H 0.96993 * 119.99910 * 4.77706 * 10 8 6 36 36 H 1.08000 * 120.66403 * 0.02562 * 12 11 10 37 37 H 0.97005 * 120.00183 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.43545 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.37563 * 179.97438 * 23 22 13 40 40 H 1.08000 * 120.03263 * 179.70583 * 25 5 4 41 41 H 1.07996 * 119.96226 * 180.25504 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2016 0.0005 5 6 4.2738 -0.0002 0.0005 6 7 5.6732 -0.0002 0.0005 7 6 6.4057 -0.5125 -1.1601 8 6 6.3471 0.4711 1.0684 9 8 5.7429 0.8079 2.0683 10 7 7.6907 0.5690 1.0278 11 6 8.3954 0.9674 2.1634 12 6 9.7817 0.9587 2.1484 13 6 10.4725 1.3645 3.3065 14 6 11.8874 1.3742 3.3455 15 1 12.4056 2.0912 3.9649 16 6 12.6152 0.4539 2.5811 17 7 13.9028 0.6122 2.4189 18 14 11.7463 -0.9999 1.7930 19 1 11.3307 -0.6398 0.4136 20 1 12.6700 -2.1616 1.7443 21 1 10.5474 -1.3540 2.5946 22 6 9.7116 1.7612 4.4273 23 6 8.3483 1.7366 4.3479 24 7 7.7329 1.3548 3.2435 25 6 3.5780 -1.2019 -0.0057 26 6 2.1969 -1.1984 -0.0004 27 1 -0.3633 0.0001 -1.0278 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6553 2.1327 -0.0007 31 1 4.1164 2.1379 0.0001 32 1 6.5874 -1.5798 -1.0330 33 1 5.8167 -0.3492 -2.0626 34 1 7.3582 0.0101 -1.2483 35 1 8.1672 0.3664 0.2077 36 1 10.3210 0.6470 1.2661 37 1 14.4069 -0.0251 1.8891 38 1 10.2010 2.0793 5.3360 39 1 7.7622 2.0389 5.2032 40 1 4.1163 -2.1382 -0.0105 41 1 1.6552 -2.1327 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208111151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:11 Heat of formation + Delta-G solvation = 52.038873 kcal Electronic energy + Delta-G solvation = -24691.364746 eV Core-core repulsion = 21150.928788 eV Total energy + Delta-G solvation = -3540.435959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67275 -39.26346 -38.18067 -35.55312 -34.50943 -33.84140 -31.97205 -31.30112 -31.03992 -28.94818 -27.47990 -26.15341 -25.78758 -22.82110 -22.57263 -22.37656 -20.91282 -19.66267 -18.38026 -17.74250 -16.95866 -16.09187 -16.00291 -15.54106 -15.26750 -14.76260 -14.65085 -14.20084 -14.09447 -13.87612 -13.57574 -13.51299 -13.48066 -13.11865 -12.96307 -12.65909 -12.54037 -12.41622 -12.03204 -11.64651 -11.58643 -11.19439 -10.99477 -10.85303 -10.68691 -10.09024 -9.95100 -9.73792 -9.39754 -9.21291 -9.00263 -8.28310 -8.22534 -7.89442 -7.28618 -7.06450 -4.75695 1.17816 1.34089 2.37307 2.61143 2.64900 2.97995 3.10570 3.22921 3.53337 3.67339 3.86640 4.01868 4.57396 4.73497 4.75778 4.88771 4.92373 5.12036 5.24956 5.32361 5.38468 5.39956 5.44782 5.49456 5.59585 5.64179 5.75314 5.95481 6.13719 6.20336 6.31818 6.37796 6.42989 6.49186 6.54282 6.59722 6.81420 6.96371 7.10439 7.16927 7.25304 7.61707 7.86393 8.06945 8.19952 8.41815 8.63696 8.89788 9.45500 9.95047 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.003256 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.768593 B = 8597.439173 C = 9316.101980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.109 4.109 4 C -0.102 4.102 5 C 0.165 3.835 6 N -0.599 5.599 7 C 0.080 3.920 8 C 0.695 3.305 9 O -0.510 6.510 10 N -0.669 5.669 11 C 0.385 3.615 12 C -0.322 4.322 13 C 0.129 3.871 14 C -0.436 4.436 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.803 5.803 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.245 1.245 22 C -0.270 4.270 23 C 0.130 3.870 24 N -0.553 5.553 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.404 0.596 36 H 0.108 0.892 37 H 0.287 0.713 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 -4.283 -10.379 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.122 4.122 5 C 0.073 3.927 6 N -0.335 5.335 7 C -0.063 4.063 8 C 0.397 3.603 9 O -0.379 6.379 10 N -0.319 5.319 11 C 0.157 3.843 12 C -0.348 4.348 13 C 0.121 3.879 14 C -0.467 4.467 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.428 5.428 18 Si 0.745 3.255 19 H -0.198 1.198 20 H -0.219 1.219 21 H -0.168 1.168 22 C -0.293 4.293 23 C -0.022 4.022 24 N -0.273 5.273 25 C -0.138 4.138 26 C -0.130 4.130 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.241 0.759 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.750 -4.085 -9.702 21.503 hybrid contribution 1.300 -0.786 -0.922 1.777 sum -17.451 -4.871 -10.624 21.003 Atomic orbital electron populations 1.20767 0.91209 1.02787 1.02105 1.19918 0.96076 0.93146 1.00329 1.20883 0.93440 0.97659 1.00801 1.21254 0.94242 0.97588 0.99093 1.17271 0.81443 0.93111 1.00827 1.44668 1.03820 1.67383 1.17586 1.21808 0.96834 0.99445 0.88198 1.15970 0.81895 0.79429 0.83039 1.91056 1.66403 1.50895 1.29526 1.42788 1.05258 1.70065 1.13796 1.17757 0.87010 0.93469 0.86096 1.21185 0.91481 1.21493 1.00662 1.17694 0.93721 0.87165 0.89330 1.19506 0.89206 1.15452 1.22515 0.88603 1.26185 0.94845 0.99374 0.93165 1.69613 1.08258 1.34382 1.30516 0.86228 0.80027 0.79372 0.79880 1.19793 1.21883 1.16790 1.21690 0.94452 1.13929 0.99252 1.21630 0.91888 0.94631 0.94016 1.67318 1.39092 1.21180 0.99662 1.21191 0.94315 0.97248 1.01066 1.20840 0.93376 0.97596 1.01206 0.91324 0.91610 0.91558 0.85822 0.85940 0.92254 0.90517 0.91097 0.75912 0.87465 0.90201 0.87138 0.85320 0.85927 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.99 5.88 -104.59 -0.62 -1.60 16 3 C -0.11 -1.25 9.69 -39.61 -0.38 -1.64 16 4 C -0.10 -1.40 9.47 -39.40 -0.37 -1.78 16 5 C 0.16 2.35 4.78 -83.69 -0.40 1.95 16 6 N -0.60 -8.86 2.93 -126.23 -0.37 -9.23 16 7 C 0.08 0.81 10.24 59.84 0.61 1.43 16 8 C 0.70 13.51 8.08 -86.92 -0.70 12.81 16 9 O -0.51 -12.05 14.31 5.29 0.08 -11.98 16 10 N -0.67 -12.96 5.27 -15.86 -0.08 -13.05 16 11 C 0.39 9.01 7.42 -154.68 -1.15 7.86 16 12 C -0.32 -7.70 6.96 -38.46 -0.27 -7.97 16 13 C 0.13 3.26 5.17 -106.55 -0.55 2.71 16 14 C -0.44 -11.47 9.67 -37.65 -0.36 -11.83 16 15 H 0.10 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.08 2.14 5.48 -17.34 -0.10 2.04 16 17 N -0.80 -20.63 13.92 55.55 0.77 -19.85 16 18 Si 0.92 20.12 24.43 -169.99 -4.15 15.97 16 19 H -0.27 -5.53 6.66 56.52 0.38 -5.16 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.24 -5.67 6.67 56.52 0.38 -5.29 16 22 C -0.27 -6.32 9.85 -39.07 -0.38 -6.71 16 23 C 0.13 2.98 11.10 -18.05 -0.20 2.78 16 24 N -0.55 -13.71 7.86 -12.76 -0.10 -13.82 16 25 C -0.12 -1.45 9.83 -39.39 -0.39 -1.84 16 26 C -0.11 -1.19 9.69 -39.61 -0.38 -1.57 16 27 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 34 H 0.07 0.66 6.12 -51.93 -0.32 0.34 16 35 H 0.40 6.34 6.34 -40.82 -0.26 6.08 16 36 H 0.11 2.44 4.43 -52.49 -0.23 2.21 16 37 H 0.29 6.65 8.29 -40.82 -0.34 6.31 16 38 H 0.11 2.38 8.06 -52.48 -0.42 1.95 16 39 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -32.64 344.56 -9.00 -41.65 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.06 Total: 8.94 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -5.28 Total: -3.82 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.22 Total: -55.95 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.15 Total: 15.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.64 -9.00 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208111151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.684 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds